RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 CDK13Q14004 1512 aaKnown RBP15.5■□□□□ 0.07
SRP54-210ENST00000556380 ATP1B4Q9UN42 357 aaPredicted RBP15.5■□□□□ 0.07
SRP54-210ENST00000556380 HECW1Q76N89 1606 aa15.48■□□□□ 0.07
SRP54-210ENST00000556380 MAP3K4Q9Y6R4 1608 aa15.46■□□□□ 0.07
SRP54-210ENST00000556380 CD109Q6YHK3 1445 aa15.46■□□□□ 0.07
SRP54-210ENST00000556380 FYCO1Q9BQS8 1478 aa15.46■□□□□ 0.06
SRP54-210ENST00000556380 PCF11O94913 1555 aaKnown RBP15.45■□□□□ 0.06
SRP54-210ENST00000556380 PPRC1Q5VV67 1664 aaKnown RBP15.44■□□□□ 0.06
SRP54-210ENST00000556380 CDK11AQ9UQ88 783 aaPredicted RBP15.44■□□□□ 0.06
SRP54-210ENST00000556380 MAGI3Q5TCQ9 1506 aa15.43■□□□□ 0.06
SRP54-210ENST00000556380 LRRIQ1Q96JM4 1722 aa15.42■□□□□ 0.06
SRP54-210ENST00000556380 TSPOAP1O95153 1857 aa15.42■□□□□ 0.06
SRP54-210ENST00000556380 CCDC18Q5T9S5 1454 aa15.41■□□□□ 0.06
SRP54-210ENST00000556380 ABCA9Q8IUA7 1624 aa15.41■□□□□ 0.06
SRP54-210ENST00000556380 TROQ12816 1431 aaPredicted RBP15.41■□□□□ 0.06
SRP54-210ENST00000556380 CFAP43Q8NDM7 1665 aa15.41■□□□□ 0.06
SRP54-210ENST00000556380 TEX14Q8IWB6 1497 aa15.4■□□□□ 0.06
SRP54-210ENST00000556380 COL17A1Q9UMD9 1497 aaPredicted RBP15.39■□□□□ 0.05
SRP54-210ENST00000556380 VPS8Q8N3P4 1428 aa15.38■□□□□ 0.05
SRP54-210ENST00000556380 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.38■□□□□ 0.051e-7■■□□□ 13.5
SRP54-210ENST00000556380 TTC37Q6PGP7 1564 aa15.33■□□□□ 0.05
SRP54-210ENST00000556380 PHLDB1Q86UU1 1377 aa15.33■□□□□ 0.04
SRP54-210ENST00000556380 PLCH2O75038 1416 aa15.33■□□□□ 0.04
SRP54-210ENST00000556380 KDM6BO15054 1643 aa15.32■□□□□ 0.04
SRP54-210ENST00000556380 KIF14Q15058 1648 aa15.32■□□□□ 0.04
SRP54-210ENST00000556380 NEO1Q92859 1461 aa15.32■□□□□ 0.04
SRP54-210ENST00000556380 ATXN8OSP0DMR3 200 aa15.31■□□□□ 0.04
SRP54-210ENST00000556380 ARAP3Q8WWN8 1544 aa15.31■□□□□ 0.04
SRP54-210ENST00000556380 FANCAO15360 1455 aa15.27■□□□□ 0.04
SRP54-210ENST00000556380 AKNAQ7Z591 1439 aa15.27■□□□□ 0.04
SRP54-210ENST00000556380 MTUS2Q5JR59 1369 aa15.27■□□□□ 0.04
SRP54-210ENST00000556380 RBM42Q9BTD8 480 aaKnown RBP15.27■□□□□ 0.04
SRP54-210ENST00000556380 EFCAB2Q5VUJ9 269 aa15.26■□□□□ 0.03
SRP54-210ENST00000556380 MAP3K1Q13233 1512 aa15.26■□□□□ 0.03
SRP54-210ENST00000556380 RAPGEF3O95398 923 aa15.25■□□□□ 0.03
SRP54-210ENST00000556380 TIAM1Q13009 1591 aa15.24■□□□□ 0.03
SRP54-210ENST00000556380 KANK4Q5T7N3 995 aaPredicted RBP15.24■□□□□ 0.03
SRP54-210ENST00000556380 GPATCH8Q9UKJ3 1502 aaKnown RBP15.23■□□□□ 0.03
SRP54-210ENST00000556380 EHBP1L1Q8N3D4 1523 aa15.22■□□□□ 0.03
SRP54-210ENST00000556380 LRRC9Q6ZRR7 1453 aa15.21■□□□□ 0.03
SRP54-210ENST00000556380 ZBTB12Q9Y330 459 aaPredicted RBP15.2■□□□□ 0.02
SRP54-210ENST00000556380 MYO5CQ9NQX4 1742 aa15.2■□□□□ 0.02
SRP54-210ENST00000556380 DENND4BO75064 1496 aaPredicted RBP15.2■□□□□ 0.02
SRP54-210ENST00000556380 SCAPERQ9BY12 1400 aa15.19■□□□□ 0.02
SRP54-210ENST00000556380 CCNB3Q8WWL7 1395 aa15.19■□□□□ 0.02
SRP54-210ENST00000556380 CFAP74Q9C0B2 1584 aa15.19■□□□□ 0.02
SRP54-210ENST00000556380 ARHGAP5Q13017 1502 aa15.18■□□□□ 0.02
SRP54-210ENST00000556380 CDC42BPBQ9Y5S2 1711 aa15.18■□□□□ 0.02
SRP54-210ENST00000556380 ADGRL1O94910 1474 aa15.18■□□□□ 0.02
SRP54-210ENST00000556380 NCOA2Q15596 1464 aa15.18■□□□□ 0.02
SRP54-210ENST00000556380 FRMPD1Q5SYB0 1578 aa15.18■□□□□ 0.02
SRP54-210ENST00000556380 PREX2Q70Z35 1606 aa15.17■□□□□ 0.02
SRP54-210ENST00000556380 CFDP1Q9UEE9 299 aaPredicted RBP15.16■□□□□ 0.02
SRP54-210ENST00000556380 CDC42BPAQ5VT25 1732 aa15.16■□□□□ 0.02
SRP54-210ENST00000556380 ARHGEF12Q9NZN5 1544 aa15.16■□□□□ 0.02
SRP54-210ENST00000556380 POGZQ7Z3K3 1410 aa15.16■□□□□ 0.02
SRP54-210ENST00000556380 AFAP1Q8N556 730 aa15.14■□□□□ 0.01
SRP54-210ENST00000556380 RICTORQ6R327 1708 aa15.13■□□□□ 0.01
SRP54-210ENST00000556380 POTEHQ6S545 545 aa15.13■□□□□ 0.01
SRP54-210ENST00000556380 ZNF644Q9H582 1327 aaPredicted RBP15.13■□□□□ 0.01
SRP54-210ENST00000556380 KIAA1107Q9UPP5 1409 aa15.12■□□□□ 0.01
SRP54-210ENST00000556380 ZNF777Q9ULD5 760 aaPredicted RBP15.12■□□□□ 0.01
SRP54-210ENST00000556380 ABCC1P33527 1531 aa15.12■□□□□ 0.01
SRP54-210ENST00000556380 SUPT6HQ7KZ85 1726 aaKnown RBP15.12■□□□□ 0.01
SRP54-210ENST00000556380 TRAPPC8Q9Y2L5 1435 aa15.11■□□□□ 0.01
SRP54-210ENST00000556380 ZMYM4Q5VZL5 1548 aa15.11■□□□□ 0.01
SRP54-210ENST00000556380 SAMD9LQ8IVG5 1584 aa15.11■□□□□ 0.01
SRP54-210ENST00000556380 MAGI2Q86UL8 1455 aa15.1■□□□□ 0.01
SRP54-210ENST00000556380 HNRNPMP52272 730 aaKnown RBP eCLIP15.1■□□□□ 0.01
SRP54-210ENST00000556380 ZNF518AQ6AHZ1 1483 aa15.09■□□□□ 0.01
SRP54-210ENST00000556380 PLEKHH2Q8IVE3 1493 aa15.08■□□□□ 0.01
SRP54-210ENST00000556380 KDM4FA0A1W2PPD8 638 aa15.08■□□□□ 0
SRP54-210ENST00000556380 YEATS2Q9ULM3 1422 aa15.08■□□□□ 0
SRP54-210ENST00000556380 MBD5Q9P267 1494 aa15.08■□□□□ 0
SRP54-210ENST00000556380 KDM5CP41229 1560 aa15.07■□□□□ 0
SRP54-210ENST00000556380 MLH3Q9UHC1 1453 aa15.06■□□□□ 0
SRP54-210ENST00000556380 MYOM3Q5VTT5 1437 aa15.05■□□□□ -0
SRP54-210ENST00000556380 MIA2Q96PC5 1412 aa15.05■□□□□ -0
SRP54-210ENST00000556380 SYCP2Q9BX26 1530 aa15.05■□□□□ -0
SRP54-210ENST00000556380 ITSN2Q9NZM3 1697 aa15.04■□□□□ -0
SRP54-210ENST00000556380 ARHGEF40Q8TER5 1519 aa15.04■□□□□ -0
SRP54-210ENST00000556380 ZFYVE16Q7Z3T8 1539 aa15.03■□□□□ -0
SRP54-210ENST00000556380 ATP10AO60312 1499 aa15.01□□□□□ -0.01
SRP54-210ENST00000556380 CAMSAP2Q08AD1 1489 aa15.01□□□□□ -0.01
SRP54-210ENST00000556380 SPAG9O60271 1321 aaKnown RBP15.01□□□□□ -0.01
SRP54-210ENST00000556380 RSPH4AQ5TD94 716 aa15.01□□□□□ -0.01
SRP54-210ENST00000556380 HECW2Q9P2P5 1572 aa14.98□□□□□ -0.01
SRP54-210ENST00000556380 FGD6Q6ZV73 1430 aa14.98□□□□□ -0.01
SRP54-210ENST00000556380 AKT1S1Q96B36 256 aa14.97□□□□□ -0.01
SRP54-210ENST00000556380 KIDINS220Q9ULH0 1771 aa14.97□□□□□ -0.01
SRP54-210ENST00000556380 C9orf84Q5VXU9 1444 aa14.97□□□□□ -0.01
SRP54-210ENST00000556380 DIP2CQ9Y2E4 1556 aa14.97□□□□□ -0.01
SRP54-210ENST00000556380 CCDC141Q6ZP82 1450 aa14.96□□□□□ -0.01
SRP54-210ENST00000556380 RTEL1-TNFRSF6BF6WH68 1400 aa14.96□□□□□ -0.01
SRP54-210ENST00000556380 ARHGEF5Q12774 1597 aa14.96□□□□□ -0.01
SRP54-210ENST00000556380 PPARGC1BQ86YN6 1023 aaKnown RBP14.96□□□□□ -0.01
SRP54-210ENST00000556380 SIGLEC1Q9BZZ2 1709 aa14.96□□□□□ -0.01
SRP54-210ENST00000556380 MYT1LQ9UL68 1186 aa14.96□□□□□ -0.01
SRP54-210ENST00000556380 ARID4BQ4LE39 1312 aaPredicted RBP14.95□□□□□ -0.02
SRP54-210ENST00000556380 ABCA6Q8N139 1617 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms