RNA–Protein interactions for RNA: ENST00000551320.1

PRPF40B-214, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-214ENST00000551320 SAMD9Q5K651 1589 aa11.5□□□□□ -0.57
PRPF40B-214ENST00000551320 ZNF219Q9P2Y4 722 aaPredicted RBP11.49□□□□□ -0.57
PRPF40B-214ENST00000551320 ARAP3Q8WWN8 1544 aa11.48□□□□□ -0.57
PRPF40B-214ENST00000551320 ABCA9Q8IUA7 1624 aa11.48□□□□□ -0.57
PRPF40B-214ENST00000551320 FRMPD1Q5SYB0 1578 aa11.47□□□□□ -0.57
PRPF40B-214ENST00000551320 CAPN15O75808 1086 aa11.47□□□□□ -0.57
PRPF40B-214ENST00000551320 CDK13Q14004 1512 aaKnown RBP11.46□□□□□ -0.57
PRPF40B-214ENST00000551320 MLECQ14165 292 aa11.46□□□□□ -0.57
PRPF40B-214ENST00000551320 HSPA2P54652 639 aa11.45□□□□□ -0.58
PRPF40B-214ENST00000551320 PTPRMP28827 1452 aa11.44□□□□□ -0.58
PRPF40B-214ENST00000551320 PLEKHD1A6NEE1 506 aa11.44□□□□□ -0.58
PRPF40B-214ENST00000551320 UBTFP17480 764 aaKnown RBP11.44□□□□□ -0.58
PRPF40B-214ENST00000551320 YEATS2Q9ULM3 1422 aa11.43□□□□□ -0.58
PRPF40B-214ENST00000551320 MADDQ8WXG6 1647 aa11.42□□□□□ -0.58
PRPF40B-214ENST00000551320 TTC37Q6PGP7 1564 aa11.42□□□□□ -0.58
PRPF40B-214ENST00000551320 SIGLEC1Q9BZZ2 1709 aa11.42□□□□□ -0.58
PRPF40B-214ENST00000551320 ADAMTSL3P82987 1691 aa11.42□□□□□ -0.58
PRPF40B-214ENST00000551320 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.41□□□□□ -0.58
PRPF40B-214ENST00000551320 AKNAQ7Z591 1439 aa11.41□□□□□ -0.58
PRPF40B-214ENST00000551320 NEO1Q92859 1461 aa11.4□□□□□ -0.58
PRPF40B-214ENST00000551320 FANCAO15360 1455 aa11.39□□□□□ -0.59
PRPF40B-214ENST00000551320 RIMS1Q86UR5 1692 aaKnown RBP11.39□□□□□ -0.59
PRPF40B-214ENST00000551320 DENND4BO75064 1496 aaPredicted RBP11.38□□□□□ -0.59
PRPF40B-214ENST00000551320 BCORL1Q5H9F3 1711 aa11.38□□□□□ -0.59
PRPF40B-214ENST00000551320 CEBPAP49715 358 aaPredicted RBP11.37□□□□□ -0.59
PRPF40B-214ENST00000551320 RICTORQ6R327 1708 aa11.37□□□□□ -0.59
PRPF40B-214ENST00000551320 EEA1Q15075 1411 aa11.35□□□□□ -0.59
PRPF40B-214ENST00000551320 SCAPERQ9BY12 1400 aa11.35□□□□□ -0.59
PRPF40B-214ENST00000551320 LMTK3Q96Q04 1460 aa11.35□□□□□ -0.59
PRPF40B-214ENST00000551320 ARHGEF40Q8TER5 1519 aa11.35□□□□□ -0.59
PRPF40B-214ENST00000551320 ARHGAP35Q9NRY4 1499 aa11.34□□□□□ -0.59
PRPF40B-214ENST00000551320 PHLDB1Q86UU1 1377 aa11.34□□□□□ -0.59
PRPF40B-214ENST00000551320 KIF14Q15058 1648 aa11.34□□□□□ -0.59
PRPF40B-214ENST00000551320 HECW1Q76N89 1606 aa11.34□□□□□ -0.59
PRPF40B-214ENST00000551320 AFAP1Q8N556 730 aa11.33□□□□□ -0.6
PRPF40B-214ENST00000551320 ZFYVE16Q7Z3T8 1539 aa11.32□□□□□ -0.6
PRPF40B-214ENST00000551320 POLA2Q14181 598 aa11.32□□□□□ -0.6
PRPF40B-214ENST00000551320 MYT1LQ9UL68 1186 aa11.32□□□□□ -0.6
PRPF40B-214ENST00000551320 PCF11O94913 1555 aaKnown RBP11.32□□□□□ -0.6
PRPF40B-214ENST00000551320 EFCAB5A4FU69 1503 aa11.31□□□□□ -0.6
PRPF40B-214ENST00000551320 FBXO41Q8TF61 875 aa11.31□□□□□ -0.6
PRPF40B-214ENST00000551320 PLCH2O75038 1416 aa11.31□□□□□ -0.6
PRPF40B-214ENST00000551320 LRRIQ1Q96JM4 1722 aa11.3□□□□□ -0.6
PRPF40B-214ENST00000551320 POGZQ7Z3K3 1410 aa11.29□□□□□ -0.6
PRPF40B-214ENST00000551320 ABCB7O75027 752 aa11.28□□□□□ -0.6
PRPF40B-214ENST00000551320 EFCAB2Q5VUJ9 269 aa11.28□□□□□ -0.6
PRPF40B-214ENST00000551320 ZMYM4Q5VZL5 1548 aa11.27□□□□□ -0.61
PRPF40B-214ENST00000551320 FKBP8Q14318 412 aa11.27□□□□□ -0.61
PRPF40B-214ENST00000551320 ARHGAP5Q13017 1502 aa11.26□□□□□ -0.61
PRPF40B-214ENST00000551320 CFAP74Q9C0B2 1584 aa11.26□□□□□ -0.61
PRPF40B-214ENST00000551320 CACNB1Q02641 598 aaPredicted RBP11.26□□□□□ -0.61
PRPF40B-214ENST00000551320 ZNF777Q9ULD5 760 aaPredicted RBP11.25□□□□□ -0.61
PRPF40B-214ENST00000551320 FMN1Q68DA7 1419 aa11.25□□□□□ -0.61
PRPF40B-214ENST00000551320 ATP10AO60312 1499 aa11.25□□□□□ -0.61
PRPF40B-214ENST00000551320 ARHGEF12Q9NZN5 1544 aa11.25□□□□□ -0.61
PRPF40B-214ENST00000551320 MYO5CQ9NQX4 1742 aa11.24□□□□□ -0.61
PRPF40B-214ENST00000551320 FER1L4A9Z1Z3 1794 aa11.24□□□□□ -0.61
PRPF40B-214ENST00000551320 TROQ12816 1431 aaPredicted RBP11.24□□□□□ -0.61
PRPF40B-214ENST00000551320 TRAPPC8Q9Y2L5 1435 aa11.24□□□□□ -0.61
PRPF40B-214ENST00000551320 DSG3P32926 999 aa11.22□□□□□ -0.61
PRPF40B-214ENST00000551320 C9orf84Q5VXU9 1444 aa11.22□□□□□ -0.61
PRPF40B-214ENST00000551320 CDK11AQ9UQ88 783 aaPredicted RBP11.22□□□□□ -0.61
PRPF40B-214ENST00000551320 MKRN4PQ13434 485 aaPredicted RBP11.21□□□□□ -0.61
PRPF40B-214ENST00000551320 CERKQ8TCT0 537 aa11.21□□□□□ -0.61
PRPF40B-214ENST00000551320 CDC42BPBQ9Y5S2 1711 aa11.21□□□□□ -0.62
PRPF40B-214ENST00000551320 MAGI2Q86UL8 1455 aa11.2□□□□□ -0.62
PRPF40B-214ENST00000551320 HNRNPMP52272 730 aaKnown RBP eCLIP11.2□□□□□ -0.62
PRPF40B-214ENST00000551320 ABCA6Q8N139 1617 aa11.2□□□□□ -0.62
PRPF40B-214ENST00000551320 DIP2CQ9Y2E4 1556 aa11.2□□□□□ -0.62
PRPF40B-214ENST00000551320 ZNF518AQ6AHZ1 1483 aa11.18□□□□□ -0.62
PRPF40B-214ENST00000551320 CLIP1P30622 1438 aa11.18□□□□□ -0.62
PRPF40B-214ENST00000551320 CASKIN1Q8WXD9 1431 aa11.17□□□□□ -0.62
PRPF40B-214ENST00000551320 ZNF644Q9H582 1327 aaPredicted RBP11.16□□□□□ -0.62
PRPF40B-214ENST00000551320 KDM5CP41229 1560 aa11.16□□□□□ -0.62
PRPF40B-214ENST00000551320 STRCQ7RTU9 1775 aa11.15□□□□□ -0.62
PRPF40B-214ENST00000551320 ABCC1P33527 1531 aa11.14□□□□□ -0.63
PRPF40B-214ENST00000551320 PREX2Q70Z35 1606 aa11.14□□□□□ -0.63
PRPF40B-214ENST00000551320 CDC42BPAQ5VT25 1732 aa11.14□□□□□ -0.63
PRPF40B-214ENST00000551320 ESF1Q9H501 851 aaKnown RBP11.13□□□□□ -0.63
PRPF40B-214ENST00000551320 C3P01024 1663 aa11.13□□□□□ -0.63
PRPF40B-214ENST00000551320 PREX1Q8TCU6 1659 aa11.13□□□□□ -0.63
PRPF40B-214ENST00000551320 ITSN2Q9NZM3 1697 aa11.13□□□□□ -0.63
PRPF40B-214ENST00000551320 SYCP2Q9BX26 1530 aa11.13□□□□□ -0.63
PRPF40B-214ENST00000551320 KIDINS220Q9ULH0 1771 aa11.13□□□□□ -0.63
PRPF40B-214ENST00000551320 SAMD9LQ8IVG5 1584 aa11.12□□□□□ -0.63
PRPF40B-214ENST00000551320 ZBTB12Q9Y330 459 aaPredicted RBP11.12□□□□□ -0.63
PRPF40B-214ENST00000551320 SPAG9O60271 1321 aaKnown RBP11.11□□□□□ -0.63
PRPF40B-214ENST00000551320 NCKAP5LQ9HCH0 1330 aa11.11□□□□□ -0.63
PRPF40B-214ENST00000551320 UHRF1BP1Q6BDS2 1440 aa11.11□□□□□ -0.63
PRPF40B-214ENST00000551320 GPATCH8Q9UKJ3 1502 aaKnown RBP11.11□□□□□ -0.63
PRPF40B-214ENST00000551320 ILDR2Q71H61 639 aa11.11□□□□□ -0.63
PRPF40B-214ENST00000551320 MLH3Q9UHC1 1453 aa11.11□□□□□ -0.63
PRPF40B-214ENST00000551320 SUPT6HQ7KZ85 1726 aaKnown RBP11.1□□□□□ -0.63
PRPF40B-214ENST00000551320 GGT6Q6P531 493 aa11.1□□□□□ -0.63
PRPF40B-214ENST00000551320 CFDP1Q9UEE9 299 aaPredicted RBP11.1□□□□□ -0.63
PRPF40B-214ENST00000551320 CCDC18Q5T9S5 1454 aa11.09□□□□□ -0.63
PRPF40B-214ENST00000551320 FYCO1Q9BQS8 1478 aa11.08□□□□□ -0.64
PRPF40B-214ENST00000551320 LOC105371045A0A1W2PR82 267 aa11.07□□□□□ -0.64
PRPF40B-214ENST00000551320 ZMYM3Q14202 1370 aa11.06□□□□□ -0.64
PRPF40B-214ENST00000551320 CCNB3Q8WWL7 1395 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms