RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 NEO1Q92859 1461 aa33.26■■■□□ 2.92
NEK3-202ENST00000550841 GPATCH8Q9UKJ3 1502 aaKnown RBP33.25■■■□□ 2.91
NEK3-202ENST00000550841 FANCAO15360 1455 aa33.25■■■□□ 2.91
NEK3-202ENST00000550841 CFDP1Q9UEE9 299 aaPredicted RBP33.23■■■□□ 2.91
NEK3-202ENST00000550841 ARHGAP5Q13017 1502 aa33.22■■■□□ 2.91
NEK3-202ENST00000550841 CFAP74Q9C0B2 1584 aa33.21■■■□□ 2.91
NEK3-202ENST00000550841 CDC42BPAQ5VT25 1732 aa33.2■■■□□ 2.91
NEK3-202ENST00000550841 PREX2Q70Z35 1606 aa33.2■■■□□ 2.9
NEK3-202ENST00000550841 AKNAQ7Z591 1439 aa33.19■■■□□ 2.9
NEK3-202ENST00000550841 CDC42BPBQ9Y5S2 1711 aa33.17■■■□□ 2.9
NEK3-202ENST00000550841 ITSN2Q9NZM3 1697 aa33.15■■■□□ 2.9
NEK3-202ENST00000550841 ZNF777Q9ULD5 760 aaPredicted RBP33.14■■■□□ 2.9
NEK3-202ENST00000550841 ADGRL1O94910 1474 aa33.12■■■□□ 2.89
NEK3-202ENST00000550841 PPARGC1BQ86YN6 1023 aaKnown RBP33.11■■■□□ 2.89
NEK3-202ENST00000550841 MYOM3Q5VTT5 1437 aa33.1■■■□□ 2.89
NEK3-202ENST00000550841 MIA2Q96PC5 1412 aa33.07■■■□□ 2.88
NEK3-202ENST00000550841 SCAPERQ9BY12 1400 aa33.05■■■□□ 2.88
NEK3-202ENST00000550841 PLEKHH2Q8IVE3 1493 aa33.05■■■□□ 2.88
NEK3-202ENST00000550841 DENND4BO75064 1496 aaPredicted RBP33.04■■■□□ 2.88
NEK3-202ENST00000550841 KIAA1107Q9UPP5 1409 aa33■■■□□ 2.87
NEK3-202ENST00000550841 RAPGEF3O95398 923 aa32.99■■■□□ 2.87
NEK3-202ENST00000550841 ZNF644Q9H582 1327 aaPredicted RBP32.98■■■□□ 2.87
NEK3-202ENST00000550841 SAMD9LQ8IVG5 1584 aa32.97■■■□□ 2.87
NEK3-202ENST00000550841 RSPH4AQ5TD94 716 aa32.96■■■□□ 2.87
NEK3-202ENST00000550841 ABCC1P33527 1531 aa32.96■■■□□ 2.87
NEK3-202ENST00000550841 HNRNPMP52272 730 aaKnown RBP eCLIP32.95■■■□□ 2.87
NEK3-202ENST00000550841 FGD6Q6ZV73 1430 aa32.94■■■□□ 2.86
NEK3-202ENST00000550841 POGZQ7Z3K3 1410 aa32.92■■■□□ 2.86
NEK3-202ENST00000550841 CAMSAP2Q08AD1 1489 aa32.92■■■□□ 2.86
NEK3-202ENST00000550841 AFAP1Q8N556 730 aa32.9■■■□□ 2.86
NEK3-202ENST00000550841 ZNF518AQ6AHZ1 1483 aa32.9■■■□□ 2.86
NEK3-202ENST00000550841 ARHGEF12Q9NZN5 1544 aa32.89■■■□□ 2.86
NEK3-202ENST00000550841 SYCP2Q9BX26 1530 aa32.87■■■□□ 2.85
NEK3-202ENST00000550841 RICTORQ6R327 1708 aa32.87■■■□□ 2.85
NEK3-202ENST00000550841 TRAPPC8Q9Y2L5 1435 aa32.86■■■□□ 2.85
NEK3-202ENST00000550841 PTPN23Q9H3S7 1636 aa32.86■■■□□ 2.85
NEK3-202ENST00000550841 MBD5Q9P267 1494 aa32.84■■■□□ 2.85
NEK3-202ENST00000550841 TCOF1Q13428 1488 aaKnown RBP32.83■■■□□ 2.85
NEK3-202ENST00000550841 MYT1LQ9UL68 1186 aa32.83■■■□□ 2.85
NEK3-202ENST00000550841 FAM50AQ14320 339 aaKnown RBP32.82■■■□□ 2.84
NEK3-202ENST00000550841 FRMPD1Q5SYB0 1578 aa32.82■■■□□ 2.84
NEK3-202ENST00000550841 MAGI2Q86UL8 1455 aa32.81■■■□□ 2.84
NEK3-202ENST00000550841 TSPY4P0CV99 314 aa32.8■■■□□ 2.84
NEK3-202ENST00000550841 TSPY10P0CW01 314 aa32.8■■■□□ 2.84
NEK3-202ENST00000550841 SPAG9O60271 1321 aaKnown RBP32.78■■■□□ 2.84
NEK3-202ENST00000550841 ZMYM4Q5VZL5 1548 aa32.78■■■□□ 2.84
NEK3-202ENST00000550841 ARHGEF5Q12774 1597 aa32.78■■■□□ 2.84
NEK3-202ENST00000550841 CCDC141Q6ZP82 1450 aa32.77■■■□□ 2.84
NEK3-202ENST00000550841 KDM5CP41229 1560 aa32.77■■■□□ 2.84
NEK3-202ENST00000550841 MLH3Q9UHC1 1453 aa32.75■■■□□ 2.83
NEK3-202ENST00000550841 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.74■■■□□ 2.83
NEK3-202ENST00000550841 RRBP1Q9P2E9 1410 aaKnown RBP32.71■■■□□ 2.83
NEK3-202ENST00000550841 RTEL1-TNFRSF6BF6WH68 1400 aa32.69■■■□□ 2.82
NEK3-202ENST00000550841 HECW2Q9P2P5 1572 aa32.69■■■□□ 2.82
NEK3-202ENST00000550841 ZFYVE16Q7Z3T8 1539 aa32.68■■■□□ 2.82
NEK3-202ENST00000550841 ABCC5O15440 1437 aa32.66■■■□□ 2.82
NEK3-202ENST00000550841 DAPK1P53355 1430 aa32.65■■■□□ 2.82
NEK3-202ENST00000550841 DNMT1P26358 1616 aaKnown RBP32.63■■■□□ 2.81
NEK3-202ENST00000550841 YEATS2Q9ULM3 1422 aa32.63■■■□□ 2.81
NEK3-202ENST00000550841 ATP7AQ04656 1500 aa32.61■■■□□ 2.81
NEK3-202ENST00000550841 ATP10AO60312 1499 aa32.61■■■□□ 2.81
NEK3-202ENST00000550841 ARHGEF40Q8TER5 1519 aa32.61■■■□□ 2.81
NEK3-202ENST00000550841 KIDINS220Q9ULH0 1771 aa32.6■■■□□ 2.81
NEK3-202ENST00000550841 C9orf84Q5VXU9 1444 aa32.6■■■□□ 2.81
NEK3-202ENST00000550841 ARID4BQ4LE39 1312 aaPredicted RBP32.59■■■□□ 2.81
NEK3-202ENST00000550841 SHANK2Q9UPX8 1470 aa32.59■■■□□ 2.81
NEK3-202ENST00000550841 INO80Q9ULG1 1556 aaPredicted RBP32.58■■■□□ 2.81
NEK3-202ENST00000550841 MAST1Q9Y2H9 1570 aa32.58■■■□□ 2.81
NEK3-202ENST00000550841 ILDR1Q86SU0 546 aaPredicted RBP32.57■■■□□ 2.8
NEK3-202ENST00000550841 ITGAEP38570 1179 aa32.53■■■□□ 2.8
NEK3-202ENST00000550841 CHIC2Q9UKJ5 165 aa32.53■■■□□ 2.8
NEK3-202ENST00000550841 DIP2CQ9Y2E4 1556 aa32.53■■■□□ 2.8
NEK3-202ENST00000550841 CROCC2H7BZ55 1655 aa32.53■■■□□ 2.8
NEK3-202ENST00000550841 ANKRD30AQ9BXX3 1397 aa32.51■■■□□ 2.79
NEK3-202ENST00000550841 ABCA6Q8N139 1617 aa32.51■■■□□ 2.79
NEK3-202ENST00000550841 REREQ9P2R6 1566 aa32.47■■■□□ 2.79
NEK3-202ENST00000550841 A2MP01023 1474 aa32.47■■■□□ 2.79
NEK3-202ENST00000550841 ADGBQ8N7X0 1667 aa32.46■■■□□ 2.79
NEK3-202ENST00000550841 DHX29Q7Z478 1369 aaKnown RBP32.46■■■□□ 2.79
NEK3-202ENST00000550841 PTPRMP28827 1452 aa32.46■■■□□ 2.79
NEK3-202ENST00000550841 RRP7BPQ9NSQ0 103 aa32.45■■■□□ 2.79
NEK3-202ENST00000550841 ADAMTSL3P82987 1691 aa32.44■■■□□ 2.78
NEK3-202ENST00000550841 PLXNC1O60486 1568 aa32.44■■■□□ 2.78
NEK3-202ENST00000550841 PTPRKQ15262 1439 aa32.43■■■□□ 2.78
NEK3-202ENST00000550841 NCOA1Q15788 1441 aa32.43■■■□□ 2.78
NEK3-202ENST00000550841 ROCK1Q13464 1354 aa32.43■■■□□ 2.78
NEK3-202ENST00000550841 ADGRL2O95490 1459 aa32.42■■■□□ 2.78
NEK3-202ENST00000550841 KIF15Q9NS87 1388 aa32.41■■■□□ 2.78
NEK3-202ENST00000550841 AGLP35573 1532 aa32.39■■■□□ 2.78
NEK3-202ENST00000550841 DUOX2Q9NRD8 1548 aa32.37■■■□□ 2.77
NEK3-202ENST00000550841 BCORL1Q5H9F3 1711 aa32.37■■■□□ 2.77
NEK3-202ENST00000550841 KIF3BO15066 747 aa32.32■■■□□ 2.76
NEK3-202ENST00000550841 MLECQ14165 292 aa32.3■■■□□ 2.76
NEK3-202ENST00000550841 MADDQ8WXG6 1647 aa32.29■■■□□ 2.76
NEK3-202ENST00000550841 ERBINQ96RT1 1412 aa32.29■■■□□ 2.76
NEK3-202ENST00000550841 SIGLEC1Q9BZZ2 1709 aa32.28■■■□□ 2.76
NEK3-202ENST00000550841 PPP6R1Q9UPN7 881 aa32.27■■■□□ 2.76
NEK3-202ENST00000550841 GGT6Q6P531 493 aa32.25■■■□□ 2.75
NEK3-202ENST00000550841 ANKRD50Q9ULJ7 1429 aa32.25■■■□□ 2.75
NEK3-202ENST00000550841 PLPPR3Q6T4P5 718 aa32.24■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms