RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 NISCHQ9Y2I1 1504 aa50.96■■■■■ 5.75
NEK3-202ENST00000550841 CCDC180Q9P1Z9 1646 aa45.06■■■■■ 4.8
NEK3-202ENST00000550841 ABCC9O60706 1549 aa44.19■■■■■ 4.66
NEK3-202ENST00000550841 DCAF8L2P0C7V8 631 aa42.52■■■■■ 4.4
NEK3-202ENST00000550841 ZCCHC6Q5VYS8 1495 aaKnown RBP42.51■■■■■ 4.4
NEK3-202ENST00000550841 NACADO15069 1562 aa42.32■■■■■ 4.37
NEK3-202ENST00000550841 RB1CC1Q8TDY2 1594 aa42.24■■■■■ 4.35
NEK3-202ENST00000550841 MYO15BQ96JP2 1530 aa42.23■■■■■ 4.35
NEK3-202ENST00000550841 DCAF1Q9Y4B6 1507 aa42.21■■■■■ 4.35
NEK3-202ENST00000550841 DNAJC5BQ9UF47 199 aa41.52■■■■■ 4.24
NEK3-202ENST00000550841 PABPN1Q86U42 306 aaKnown RBP eCLIP41.22■■■■■ 4.19
NEK3-202ENST00000550841 UNC13AQ9UPW8 1703 aa41.15■■■■■ 4.18
NEK3-202ENST00000550841 SCRIBQ14160 1630 aa41.12■■■■■ 4.17
NEK3-202ENST00000550841 BICRAQ9NZM4 1560 aa40.84■■■■■ 4.13
NEK3-202ENST00000550841 SHROOM4Q9ULL8 1493 aa40.57■■■■■ 4.08
NEK3-202ENST00000550841 CC2D2AQ9P2K1 1620 aa39.86■■■■□ 3.97
NEK3-202ENST00000550841 CECR2Q9BXF3 1484 aa39.81■■■■□ 3.96
NEK3-202ENST00000550841 EIF4G1Q04637 1599 aaKnown RBP39.77■■■■□ 3.96
NEK3-202ENST00000550841 BAZ1AQ9NRL2 1556 aaPredicted RBP39.48■■■■□ 3.91
NEK3-202ENST00000550841 SMARCA4P51532 1647 aa39.4■■■■□ 3.9
NEK3-202ENST00000550841 MROH2BQ7Z745 1585 aa39.24■■■■□ 3.87
NEK3-202ENST00000550841 SMARCA2P51531 1590 aa39.12■■■■□ 3.85
NEK3-202ENST00000550841 ATAD2BQ9ULI0 1458 aa39.11■■■■□ 3.85
NEK3-202ENST00000550841 NCAPD3P42695 1498 aa39.05■■■■□ 3.84
NEK3-202ENST00000550841 PEG3Q9GZU2 1588 aa39.03■■■■□ 3.84
NEK3-202ENST00000550841 RSF1Q96T23 1441 aaPredicted RBP39.01■■■■□ 3.84
NEK3-202ENST00000550841 HMGXB3Q12766 1538 aa38.85■■■■□ 3.81
NEK3-202ENST00000550841 BAZ1BQ9UIG0 1483 aaKnown RBP38.83■■■■□ 3.81
NEK3-202ENST00000550841 WIZO95785 1651 aa38.83■■■■□ 3.81
NEK3-202ENST00000550841 TOP2AP11388 1531 aaKnown RBP38.48■■■■□ 3.75
NEK3-202ENST00000550841 SUPT5HO00267 1087 aaKnown RBP38.47■■■■□ 3.75
NEK3-202ENST00000550841 DNAJC5Q9H3Z4 198 aa38.21■■■■□ 3.71
NEK3-202ENST00000550841 ERCC6Q03468 1493 aa38.21■■■■□ 3.71
NEK3-202ENST00000550841 CUX2O14529 1486 aa38.09■■■■□ 3.69
NEK3-202ENST00000550841 CCDC88BA6NC98 1476 aa38.05■■■■□ 3.68
NEK3-202ENST00000550841 CADPSQ9ULU8 1353 aa37.96■■■■□ 3.67
NEK3-202ENST00000550841 LAMC3Q9Y6N6 1575 aa37.92■■■■□ 3.66
NEK3-202ENST00000550841 NESP48681 1621 aa37.9■■■■□ 3.66
NEK3-202ENST00000550841 CFTRP13569 1480 aa37.79■■■■□ 3.64
NEK3-202ENST00000550841 PDS5BQ9NTI5 1447 aa37.72■■■■□ 3.63
NEK3-202ENST00000550841 PRDM2Q13029 1718 aa37.48■■■■□ 3.59
NEK3-202ENST00000550841 FANCD2Q9BXW9 1451 aa37.48■■■■□ 3.59
NEK3-202ENST00000550841 THOC2Q8NI27 1593 aaKnown RBP37.45■■■■□ 3.59
NEK3-202ENST00000550841 KIF21AQ7Z4S6 1674 aa37.41■■■■□ 3.58
NEK3-202ENST00000550841 CEP164Q9UPV0 1460 aa37.39■■■■□ 3.58
NEK3-202ENST00000550841 MRC2Q9UBG0 1479 aa37.23■■■■□ 3.55
NEK3-202ENST00000550841 ABCC8Q09428 1581 aa37.05■■■■□ 3.52
NEK3-202ENST00000550841 WDR62O43379 1518 aa37.05■■■■□ 3.52
NEK3-202ENST00000550841 URB2Q14146 1524 aaKnown RBP37.02■■■■□ 3.52
NEK3-202ENST00000550841 TOPBP1Q92547 1522 aa36.92■■■■□ 3.5
NEK3-202ENST00000550841 DNMBPQ6XZF7 1577 aa36.91■■■■□ 3.5
NEK3-202ENST00000550841 WRNQ14191 1432 aaPredicted RBP eCLIP36.8■■■■□ 3.48
NEK3-202ENST00000550841 CUX1P39880 1505 aa36.78■■■■□ 3.48
NEK3-202ENST00000550841 POLA1P09884 1462 aaPredicted RBP36.62■■■■□ 3.45
NEK3-202ENST00000550841 TOP2BQ02880 1626 aa36.62■■■■□ 3.45
NEK3-202ENST00000550841 IFT140Q96RY7 1462 aa36.62■■■■□ 3.45
NEK3-202ENST00000550841 FGD5Q6ZNL6 1462 aa36.61■■■■□ 3.45
NEK3-202ENST00000550841 BIVM-ERCC5R4GMW8 1640 aa36.59■■■■□ 3.45
NEK3-202ENST00000550841 SYNJ1O43426 1573 aa36.58■■■■□ 3.45
NEK3-202ENST00000550841 TRIM41Q8WV44 630 aa36.58■■■■□ 3.45
NEK3-202ENST00000550841 SOGA1O94964 1423 aa36.57■■■■□ 3.44
NEK3-202ENST00000550841 OSCARQ8IYS5 282 aa36.49■■■■□ 3.43
NEK3-202ENST00000550841 RAD54L2Q9Y4B4 1467 aa36.46■■■■□ 3.43
NEK3-202ENST00000550841 TARBP1Q13395 1621 aaKnown RBP36.44■■■■□ 3.42
NEK3-202ENST00000550841 ZNF608Q9ULD9 1512 aaPredicted RBP36.32■■■■□ 3.4
NEK3-202ENST00000550841 ABCA10Q8WWZ4 1543 aa36.31■■■■□ 3.4
NEK3-202ENST00000550841 TDRD9Q8NDG6 1382 aaKnown RBP36.27■■■■□ 3.4
NEK3-202ENST00000550841 WDR97A6NE52 1622 aa36.26■■■■□ 3.39
NEK3-202ENST00000550841 AQRO60306 1485 aaKnown RBP eCLIP36.23■■■■□ 3.395e-7■■■■■ 27.6
NEK3-202ENST00000550841 CHIC1Q5VXU3 224 aa36.18■■■■□ 3.38
NEK3-202ENST00000550841 EIF4G3O43432 1585 aaKnown RBP36.18■■■■□ 3.38
NEK3-202ENST00000550841 GAPVD1Q14C86 1478 aa36.12■■■■□ 3.37
NEK3-202ENST00000550841 GRIN2BQ13224 1484 aa36.06■■■■□ 3.36
NEK3-202ENST00000550841 ABCA5Q8WWZ7 1642 aa36.05■■■■□ 3.36
NEK3-202ENST00000550841 KIF27Q86VH2 1401 aa36.03■■■■□ 3.36
NEK3-202ENST00000550841 PBRM1Q86U86 1689 aa35.92■■■■□ 3.34
NEK3-202ENST00000550841 MAGI1Q96QZ7 1491 aaPredicted RBP35.91■■■■□ 3.34
NEK3-202ENST00000550841 ERICH3Q5RHP9 1530 aa35.89■■■■□ 3.34
NEK3-202ENST00000550841 SNAPC4Q5SXM2 1469 aa35.88■■■■□ 3.33
NEK3-202ENST00000550841 RIMBP3CA6NJZ7 1639 aa35.83■■■■□ 3.33
NEK3-202ENST00000550841 RIMBP3BA6NNM3 1639 aa35.83■■■■□ 3.33
NEK3-202ENST00000550841 RIMBP3Q9UFD9 1639 aa35.83■■■■□ 3.33
NEK3-202ENST00000550841 IGF1RP08069 1367 aa35.81■■■■□ 3.32
NEK3-202ENST00000550841 FBLN2P98095 1184 aa35.8■■■■□ 3.32
NEK3-202ENST00000550841 CHMP7Q8WUX9 453 aaPredicted RBP35.8■■■■□ 3.32
NEK3-202ENST00000550841 SYNJ2O15056 1496 aa35.75■■■■□ 3.31
NEK3-202ENST00000550841 FHAD1B1AJZ9 1412 aa35.74■■■■□ 3.31
NEK3-202ENST00000550841 ARHGEF11O15085 1522 aa35.74■■■■□ 3.31
NEK3-202ENST00000550841 RUSC2Q8N2Y8 1516 aa35.73■■■■□ 3.31
NEK3-202ENST00000550841 EEA1Q15075 1411 aa35.7■■■■□ 3.31
NEK3-202ENST00000550841 ADAMTS12P58397 1594 aa35.67■■■■□ 3.3
NEK3-202ENST00000550841 CYB5RLQ6IPT4 315 aa35.64■■■■□ 3.3
NEK3-202ENST00000550841 CUL7Q14999 1698 aa35.64■■■■□ 3.3
NEK3-202ENST00000550841 CARMIL1Q5VZK9 1371 aa35.64■■■■□ 3.3
NEK3-202ENST00000550841 CHD1O14646 1710 aa35.63■■■■□ 3.29
NEK3-202ENST00000550841 CSRNP3Q8WYN3 585 aa35.6■■■■□ 3.29
NEK3-202ENST00000550841 GRIN2AQ12879 1464 aa35.55■■■■□ 3.28
NEK3-202ENST00000550841 FAM9AQ8IZU1 332 aaPredicted RBP35.53■■■■□ 3.28
NEK3-202ENST00000550841 RAPGEF2Q9Y4G8 1499 aa35.45■■■■□ 3.27
NEK3-202ENST00000550841 PRXQ9BXM0 1461 aa35.41■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms