RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 RAPGEF3O95398 923 aa35.32■■■■□ 3.24
BRF1-216ENST00000550208 CCNB3Q8WWL7 1395 aa35.32■■■■□ 3.24
BRF1-216ENST00000550208 CDC42BPBQ9Y5S2 1711 aa35.31■■■■□ 3.24
BRF1-216ENST00000550208 CFAP74Q9C0B2 1584 aa35.3■■■■□ 3.24
BRF1-216ENST00000550208 CDC42BPAQ5VT25 1732 aa35.29■■■■□ 3.24
BRF1-216ENST00000550208 PREX2Q70Z35 1606 aa35.27■■■■□ 3.24
BRF1-216ENST00000550208 NCOA2Q15596 1464 aa35.27■■■■□ 3.24
BRF1-216ENST00000550208 CFDP1Q9UEE9 299 aaPredicted RBP35.25■■■■□ 3.23
BRF1-216ENST00000550208 ZNF777Q9ULD5 760 aaPredicted RBP35.25■■■■□ 3.23
BRF1-216ENST00000550208 SUPT6HQ7KZ85 1726 aaKnown RBP35.25■■■■□ 3.23
BRF1-216ENST00000550208 SCAPERQ9BY12 1400 aa35.24■■■■□ 3.23
BRF1-216ENST00000550208 DENND4BO75064 1496 aaPredicted RBP35.23■■■■□ 3.23
BRF1-216ENST00000550208 ADGRL1O94910 1474 aa35.22■■■■□ 3.23
BRF1-216ENST00000550208 FRMPD1Q5SYB0 1578 aa35.13■■■■□ 3.21
BRF1-216ENST00000550208 ZNF644Q9H582 1327 aaPredicted RBP35.11■■■■□ 3.21
BRF1-216ENST00000550208 ARHGEF12Q9NZN5 1544 aa35.11■■■■□ 3.21
BRF1-216ENST00000550208 RICTORQ6R327 1708 aa35.1■■■■□ 3.21
BRF1-216ENST00000550208 AFAP1Q8N556 730 aa35.1■■■■□ 3.21
BRF1-216ENST00000550208 HNRNPMP52272 730 aaKnown RBP eCLIP35.09■■■■□ 3.211e-19■■■■■ 34.3
BRF1-216ENST00000550208 SAMD9LQ8IVG5 1584 aa35.08■■■■□ 3.21
BRF1-216ENST00000550208 POGZQ7Z3K3 1410 aa35.08■■■■□ 3.21
BRF1-216ENST00000550208 ITSN2Q9NZM3 1697 aa35.08■■■■□ 3.21
BRF1-216ENST00000550208 ABCC1P33527 1531 aa35.06■■■■□ 3.2
BRF1-216ENST00000550208 PPARGC1BQ86YN6 1023 aaKnown RBP35.04■■■■□ 3.2
BRF1-216ENST00000550208 TRAPPC8Q9Y2L5 1435 aa35.04■■■■□ 3.2
BRF1-216ENST00000550208 KIAA1107Q9UPP5 1409 aa35■■■■□ 3.19
BRF1-216ENST00000550208 MYOM3Q5VTT5 1437 aa34.99■■■■□ 3.19
BRF1-216ENST00000550208 PLEKHH2Q8IVE3 1493 aa34.99■■■■□ 3.19
BRF1-216ENST00000550208 ZNF518AQ6AHZ1 1483 aa34.98■■■■□ 3.19
BRF1-216ENST00000550208 SYCP2Q9BX26 1530 aa34.97■■■■□ 3.19
BRF1-216ENST00000550208 ZMYM4Q5VZL5 1548 aa34.96■■■■□ 3.19
BRF1-216ENST00000550208 MYT1LQ9UL68 1186 aa34.94■■■■□ 3.18
BRF1-216ENST00000550208 MAGI2Q86UL8 1455 aa34.92■■■■□ 3.18
BRF1-216ENST00000550208 MIA2Q96PC5 1412 aa34.92■■■■□ 3.18
BRF1-216ENST00000550208 YEATS2Q9ULM3 1422 aa34.92■■■■□ 3.18
BRF1-216ENST00000550208 CAMSAP2Q08AD1 1489 aa34.91■■■■□ 3.18
BRF1-216ENST00000550208 KDM5CP41229 1560 aa34.91■■■■□ 3.18
BRF1-216ENST00000550208 MBD5Q9P267 1494 aa34.9■■■■□ 3.18
BRF1-216ENST00000550208 ZFYVE16Q7Z3T8 1539 aa34.88■■■■□ 3.17
BRF1-216ENST00000550208 SPAG9O60271 1321 aaKnown RBP34.85■■■■□ 3.17
BRF1-216ENST00000550208 MLH3Q9UHC1 1453 aa34.85■■■■□ 3.17
BRF1-216ENST00000550208 ARHGEF40Q8TER5 1519 aa34.83■■■■□ 3.17
BRF1-216ENST00000550208 FGD6Q6ZV73 1430 aa34.82■■■■□ 3.17
BRF1-216ENST00000550208 RSPH4AQ5TD94 716 aa34.82■■■■□ 3.16
BRF1-216ENST00000550208 HECW2Q9P2P5 1572 aa34.8■■■■□ 3.16
BRF1-216ENST00000550208 ATP10AO60312 1499 aa34.78■■■■□ 3.16
BRF1-216ENST00000550208 KDM4FA0A1W2PPD8 638 aa34.77■■■■□ 3.16
BRF1-216ENST00000550208 ARID4BQ4LE39 1312 aaPredicted RBP34.77■■■■□ 3.16
BRF1-216ENST00000550208 PTPN23Q9H3S7 1636 aa34.77■■■■□ 3.16
BRF1-216ENST00000550208 KIDINS220Q9ULH0 1771 aa34.75■■■■□ 3.15
BRF1-216ENST00000550208 CCDC141Q6ZP82 1450 aa34.74■■■■□ 3.15
BRF1-216ENST00000550208 ARHGEF5Q12774 1597 aa34.72■■■■□ 3.15
BRF1-216ENST00000550208 TSPY4P0CV99 314 aa34.72■■■■□ 3.15
BRF1-216ENST00000550208 TSPY10P0CW01 314 aa34.72■■■■□ 3.15
BRF1-216ENST00000550208 TCOF1Q13428 1488 aaKnown RBP34.71■■■■□ 3.15
BRF1-216ENST00000550208 DIP2CQ9Y2E4 1556 aa34.7■■■■□ 3.15
BRF1-216ENST00000550208 C9orf84Q5VXU9 1444 aa34.7■■■■□ 3.15
BRF1-216ENST00000550208 ABCA6Q8N139 1617 aa34.7■■■■□ 3.14
BRF1-216ENST00000550208 FAM50AQ14320 339 aaKnown RBP34.69■■■■□ 3.14
BRF1-216ENST00000550208 ATP7AQ04656 1500 aa34.69■■■■□ 3.14
BRF1-216ENST00000550208 SIGLEC1Q9BZZ2 1709 aa34.67■■■■□ 3.14
BRF1-216ENST00000550208 INO80Q9ULG1 1556 aaPredicted RBP34.66■■■■□ 3.14
BRF1-216ENST00000550208 RTEL1-TNFRSF6BF6WH68 1400 aa34.66■■■■□ 3.14
BRF1-216ENST00000550208 ABCC5O15440 1437 aa34.63■■■■□ 3.13
BRF1-216ENST00000550208 MLECQ14165 292 aa34.61■■■■□ 3.13
BRF1-216ENST00000550208 DAPK1P53355 1430 aa34.56■■■■□ 3.12
BRF1-216ENST00000550208 REREQ9P2R6 1566 aa34.56■■■■□ 3.12
BRF1-216ENST00000550208 A2MP01023 1474 aa34.54■■■■□ 3.12
BRF1-216ENST00000550208 BCORL1Q5H9F3 1711 aa34.54■■■■□ 3.12
BRF1-216ENST00000550208 DNMT1P26358 1616 aaKnown RBP34.53■■■■□ 3.12
BRF1-216ENST00000550208 MAST1Q9Y2H9 1570 aa34.53■■■■□ 3.12
BRF1-216ENST00000550208 CHIC2Q9UKJ5 165 aa34.52■■■■□ 3.12
BRF1-216ENST00000550208 AEBP2Q6ZN18 517 aaPredicted RBP34.51■■■■□ 3.12
BRF1-216ENST00000550208 AGLP35573 1532 aa34.5■■■■□ 3.11
BRF1-216ENST00000550208 DHX29Q7Z478 1369 aaKnown RBP34.49■■■■□ 3.11
BRF1-216ENST00000550208 ADAMTSL3P82987 1691 aa34.49■■■■□ 3.11
BRF1-216ENST00000550208 ADGBQ8N7X0 1667 aa34.48■■■■□ 3.11
BRF1-216ENST00000550208 SHANK2Q9UPX8 1470 aa34.46■■■■□ 3.11
BRF1-216ENST00000550208 CROCC2H7BZ55 1655 aa34.45■■■■□ 3.11
BRF1-216ENST00000550208 RRP7BPQ9NSQ0 103 aa34.44■■■■□ 3.1
BRF1-216ENST00000550208 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.44■■■■□ 3.15e-7■■■■■ 29.7
BRF1-216ENST00000550208 RRBP1Q9P2E9 1410 aaKnown RBP34.44■■■■□ 3.1
BRF1-216ENST00000550208 PLXNC1O60486 1568 aa34.43■■■■□ 3.1
BRF1-216ENST00000550208 ITGAEP38570 1179 aa34.42■■■■□ 3.1
BRF1-216ENST00000550208 PTPRKQ15262 1439 aa34.4■■■■□ 3.1
BRF1-216ENST00000550208 MADDQ8WXG6 1647 aa34.39■■■■□ 3.1
BRF1-216ENST00000550208 KIF3BO15066 747 aa34.38■■■■□ 3.09
BRF1-216ENST00000550208 GGT6Q6P531 493 aa34.38■■■■□ 3.09
BRF1-216ENST00000550208 ANKRD30AQ9BXX3 1397 aa34.36■■■■□ 3.09
BRF1-216ENST00000550208 KIF15Q9NS87 1388 aa34.36■■■■□ 3.09
BRF1-216ENST00000550208 NCOA1Q15788 1441 aa34.35■■■■□ 3.09
BRF1-216ENST00000550208 PTPRMP28827 1452 aa34.31■■■■□ 3.08
BRF1-216ENST00000550208 RIMS1Q86UR5 1692 aaKnown RBP34.31■■■■□ 3.08
BRF1-216ENST00000550208 DUOX2Q9NRD8 1548 aa34.3■■■■□ 3.08
BRF1-216ENST00000550208 ADGRL2O95490 1459 aa34.3■■■■□ 3.08
BRF1-216ENST00000550208 ESF1Q9H501 851 aaKnown RBP34.29■■■■□ 3.08
BRF1-216ENST00000550208 FER1L4A9Z1Z3 1794 aa34.28■■■■□ 3.08
BRF1-216ENST00000550208 PLPPR3Q6T4P5 718 aa34.28■■■■□ 3.08
BRF1-216ENST00000550208 PPP6R1Q9UPN7 881 aa34.23■■■■□ 3.07
BRF1-216ENST00000550208 CEBPAP49715 358 aaPredicted RBP34.22■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms