RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 NISCHQ9Y2I1 1504 aa54.22■■■■■ 6.27
BRF1-216ENST00000550208 CCDC180Q9P1Z9 1646 aa47.97■■■■■ 5.27
BRF1-216ENST00000550208 ABCC9O60706 1549 aa46.9■■■■■ 5.1
BRF1-216ENST00000550208 DCAF8L2P0C7V8 631 aa45.41■■■■■ 4.86
BRF1-216ENST00000550208 ZCCHC6Q5VYS8 1495 aaKnown RBP45.17■■■■■ 4.82
BRF1-216ENST00000550208 NACADO15069 1562 aa45.11■■■■■ 4.81
BRF1-216ENST00000550208 RB1CC1Q8TDY2 1594 aa45.11■■■■■ 4.81
BRF1-216ENST00000550208 MYO15BQ96JP2 1530 aa44.88■■■■■ 4.78
BRF1-216ENST00000550208 DCAF1Q9Y4B6 1507 aa44.79■■■■■ 4.76
BRF1-216ENST00000550208 UNC13AQ9UPW8 1703 aa44.09■■■■■ 4.65
BRF1-216ENST00000550208 PABPN1Q86U42 306 aaKnown RBP eCLIP43.97■■■■■ 4.63
BRF1-216ENST00000550208 SCRIBQ14160 1630 aa43.9■■■■■ 4.62
BRF1-216ENST00000550208 BICRAQ9NZM4 1560 aa43.79■■■■■ 4.6
BRF1-216ENST00000550208 SHROOM4Q9ULL8 1493 aa43.19■■■■■ 4.51
BRF1-216ENST00000550208 DNAJC5BQ9UF47 199 aa42.98■■■■■ 4.47
BRF1-216ENST00000550208 EIF4G1Q04637 1599 aaKnown RBP42.59■■■■■ 4.41
BRF1-216ENST00000550208 CC2D2AQ9P2K1 1620 aa42.38■■■■■ 4.37
BRF1-216ENST00000550208 CECR2Q9BXF3 1484 aa42.29■■■■■ 4.36
BRF1-216ENST00000550208 SMARCA4P51532 1647 aa41.98■■■■■ 4.31
BRF1-216ENST00000550208 BAZ1AQ9NRL2 1556 aaPredicted RBP41.95■■■■■ 4.31
BRF1-216ENST00000550208 MROH2BQ7Z745 1585 aa41.82■■■■■ 4.29
BRF1-216ENST00000550208 ATAD2BQ9ULI0 1458 aa41.75■■■■■ 4.27
BRF1-216ENST00000550208 NCAPD3P42695 1498 aa41.68■■■■■ 4.26
BRF1-216ENST00000550208 SMARCA2P51531 1590 aa41.64■■■■■ 4.26
BRF1-216ENST00000550208 PEG3Q9GZU2 1588 aa41.53■■■■■ 4.24
BRF1-216ENST00000550208 RSF1Q96T23 1441 aaPredicted RBP41.44■■■■■ 4.23
BRF1-216ENST00000550208 HMGXB3Q12766 1538 aa41.41■■■■■ 4.22
BRF1-216ENST00000550208 BAZ1BQ9UIG0 1483 aaKnown RBP41.39■■■■■ 4.22
BRF1-216ENST00000550208 WIZO95785 1651 aa41.37■■■■■ 4.21
BRF1-216ENST00000550208 TOP2AP11388 1531 aaKnown RBP40.88■■■■■ 4.14
BRF1-216ENST00000550208 SUPT5HO00267 1087 aaKnown RBP40.69■■■■■ 4.1
BRF1-216ENST00000550208 NESP48681 1621 aa40.67■■■■■ 4.1
BRF1-216ENST00000550208 CADPSQ9ULU8 1353 aa40.51■■■■■ 4.08
BRF1-216ENST00000550208 CCDC88BA6NC98 1476 aa40.5■■■■■ 4.07
BRF1-216ENST00000550208 LAMC3Q9Y6N6 1575 aa40.48■■■■■ 4.07
BRF1-216ENST00000550208 ERCC6Q03468 1493 aa40.35■■■■■ 4.05
BRF1-216ENST00000550208 CFTRP13569 1480 aa40.28■■■■■ 4.04
BRF1-216ENST00000550208 PDS5BQ9NTI5 1447 aa40.26■■■■■ 4.04
BRF1-216ENST00000550208 KIF21AQ7Z4S6 1674 aa40.09■■■■■ 4.01
BRF1-216ENST00000550208 FANCD2Q9BXW9 1451 aa40.01■■■■■ 4
BRF1-216ENST00000550208 CEP164Q9UPV0 1460 aa39.91■■■■□ 3.98
BRF1-216ENST00000550208 THOC2Q8NI27 1593 aaKnown RBP39.88■■■■□ 3.97
BRF1-216ENST00000550208 PRDM2Q13029 1718 aa39.87■■■■□ 3.97
BRF1-216ENST00000550208 MRC2Q9UBG0 1479 aa39.81■■■■□ 3.96
BRF1-216ENST00000550208 CUX2O14529 1486 aa39.8■■■■□ 3.96
BRF1-216ENST00000550208 WDR62O43379 1518 aa39.64■■■■□ 3.94
BRF1-216ENST00000550208 URB2Q14146 1524 aaKnown RBP39.61■■■■□ 3.93
BRF1-216ENST00000550208 TOPBP1Q92547 1522 aa39.4■■■■□ 3.9
BRF1-216ENST00000550208 ABCC8Q09428 1581 aa39.38■■■■□ 3.89
BRF1-216ENST00000550208 DNMBPQ6XZF7 1577 aa39.33■■■■□ 3.89
BRF1-216ENST00000550208 CUX1P39880 1505 aa39.2■■■■□ 3.87
BRF1-216ENST00000550208 POLA1P09884 1462 aaPredicted RBP39.08■■■■□ 3.85
BRF1-216ENST00000550208 IFT140Q96RY7 1462 aa39.08■■■■□ 3.85
BRF1-216ENST00000550208 WRNQ14191 1432 aaPredicted RBP eCLIP39.04■■■■□ 3.84
BRF1-216ENST00000550208 FGD5Q6ZNL6 1462 aa39.03■■■■□ 3.84
BRF1-216ENST00000550208 SOGA1O94964 1423 aa38.98■■■■□ 3.83
BRF1-216ENST00000550208 RAD54L2Q9Y4B4 1467 aa38.98■■■■□ 3.83
BRF1-216ENST00000550208 ZNF608Q9ULD9 1512 aaPredicted RBP38.94■■■■□ 3.82
BRF1-216ENST00000550208 TARBP1Q13395 1621 aaKnown RBP38.92■■■■□ 3.82
BRF1-216ENST00000550208 SYNJ1O43426 1573 aa38.91■■■■□ 3.82
BRF1-216ENST00000550208 TOP2BQ02880 1626 aa38.88■■■■□ 3.81
BRF1-216ENST00000550208 BIVM-ERCC5R4GMW8 1640 aa38.85■■■■□ 3.81
BRF1-216ENST00000550208 AQRO60306 1485 aaKnown RBP eCLIP38.79■■■■□ 3.8
BRF1-216ENST00000550208 TDRD9Q8NDG6 1382 aaKnown RBP38.77■■■■□ 3.8
BRF1-216ENST00000550208 EIF4G3O43432 1585 aaKnown RBP38.7■■■■□ 3.79
BRF1-216ENST00000550208 ABCA10Q8WWZ4 1543 aa38.63■■■■□ 3.78
BRF1-216ENST00000550208 WDR97A6NE52 1622 aa38.6■■■■□ 3.77
BRF1-216ENST00000550208 GAPVD1Q14C86 1478 aa38.49■■■■□ 3.75
BRF1-216ENST00000550208 DNAJC5Q9H3Z4 198 aa38.46■■■■□ 3.75
BRF1-216ENST00000550208 GRIN2BQ13224 1484 aa38.44■■■■□ 3.74
BRF1-216ENST00000550208 ABCA5Q8WWZ7 1642 aa38.42■■■■□ 3.74
BRF1-216ENST00000550208 TRIM41Q8WV44 630 aa38.38■■■■□ 3.73
BRF1-216ENST00000550208 SNAPC4Q5SXM2 1469 aa38.36■■■■□ 3.73
BRF1-216ENST00000550208 OSCARQ8IYS5 282 aa38.34■■■■□ 3.73
BRF1-216ENST00000550208 FBLN2P98095 1184 aa38.33■■■■□ 3.73
BRF1-216ENST00000550208 PBRM1Q86U86 1689 aa38.32■■■■□ 3.72
BRF1-216ENST00000550208 MAGI1Q96QZ7 1491 aaPredicted RBP38.28■■■■□ 3.72
BRF1-216ENST00000550208 CHMP7Q8WUX9 453 aaPredicted RBP38.23■■■■□ 3.71
BRF1-216ENST00000550208 KIF27Q86VH2 1401 aa38.21■■■■□ 3.71
BRF1-216ENST00000550208 CHD1O14646 1710 aa38.18■■■■□ 3.7
BRF1-216ENST00000550208 ERICH3Q5RHP9 1530 aa38.15■■■■□ 3.7
BRF1-216ENST00000550208 SYNJ2O15056 1496 aa38.15■■■■□ 3.7
BRF1-216ENST00000550208 CHIC1Q5VXU3 224 aa38.1■■■■□ 3.69
BRF1-216ENST00000550208 IGF1RP08069 1367 aa38.09■■■■□ 3.69
BRF1-216ENST00000550208 FHAD1B1AJZ9 1412 aa38.05■■■■□ 3.68
BRF1-216ENST00000550208 ADAMTS12P58397 1594 aa38.04■■■■□ 3.68
BRF1-216ENST00000550208 RUSC2Q8N2Y8 1516 aa38.02■■■■□ 3.68
BRF1-216ENST00000550208 GRIN2AQ12879 1464 aa37.94■■■■□ 3.66
BRF1-216ENST00000550208 CARMIL1Q5VZK9 1371 aa37.86■■■■□ 3.65
BRF1-216ENST00000550208 CUL7Q14999 1698 aa37.81■■■■□ 3.64
BRF1-216ENST00000550208 CLASP1Q7Z460 1538 aa37.77■■■■□ 3.64
BRF1-216ENST00000550208 NUP160Q12769 1436 aa37.76■■■■□ 3.63
BRF1-216ENST00000550208 CEP170Q5SW79 1584 aa37.73■■■■□ 3.63
BRF1-216ENST00000550208 CSRNP3Q8WYN3 585 aa37.65■■■■□ 3.62
BRF1-216ENST00000550208 FAM9AQ8IZU1 332 aaPredicted RBP37.64■■■■□ 3.62
BRF1-216ENST00000550208 ARHGEF11O15085 1522 aa37.61■■■■□ 3.61
BRF1-216ENST00000550208 RAPGEF2Q9Y4G8 1499 aa37.6■■■■□ 3.61
BRF1-216ENST00000550208 RIMBP3CA6NJZ7 1639 aa37.59■■■■□ 3.61
BRF1-216ENST00000550208 RIMBP3BA6NNM3 1639 aa37.59■■■■□ 3.61
BRF1-216ENST00000550208 RIMBP3Q9UFD9 1639 aa37.59■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms