RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ARAP3Q8WWN8 1544 aa32.84■■■□□ 2.85
VPS29-206ENST00000549578 ITSN2Q9NZM3 1697 aa32.83■■■□□ 2.85
VPS29-206ENST00000549578 FANCAO15360 1455 aa32.83■■■□□ 2.85
VPS29-206ENST00000549578 CFDP1Q9UEE9 299 aaPredicted RBP32.79■■■□□ 2.84
VPS29-206ENST00000549578 MYOM3Q5VTT5 1437 aa32.79■■■□□ 2.84
VPS29-206ENST00000549578 EFCAB2Q5VUJ9 269 aa32.77■■■□□ 2.84
VPS29-206ENST00000549578 CFAP74Q9C0B2 1584 aa32.76■■■□□ 2.83
VPS29-206ENST00000549578 NEO1Q92859 1461 aa32.75■■■□□ 2.83
VPS29-206ENST00000549578 ZNF777Q9ULD5 760 aaPredicted RBP32.74■■■□□ 2.83
VPS29-206ENST00000549578 AKNAQ7Z591 1439 aa32.72■■■□□ 2.83
VPS29-206ENST00000549578 SAMD9LQ8IVG5 1584 aa32.7■■■□□ 2.82
VPS29-206ENST00000549578 ZNF644Q9H582 1327 aaPredicted RBP32.68■■■□□ 2.82
VPS29-206ENST00000549578 FGD6Q6ZV73 1430 aa32.68■■■□□ 2.82
VPS29-206ENST00000549578 MIA2Q96PC5 1412 aa32.68■■■□□ 2.82
VPS29-206ENST00000549578 ADGRL1O94910 1474 aa32.66■■■□□ 2.82
VPS29-206ENST00000549578 CAMSAP2Q08AD1 1489 aa32.63■■■□□ 2.81
VPS29-206ENST00000549578 ABCC1P33527 1531 aa32.63■■■□□ 2.81
VPS29-206ENST00000549578 COL17A1Q9UMD9 1497 aaPredicted RBP32.62■■■□□ 2.81
VPS29-206ENST00000549578 PTPN23Q9H3S7 1636 aa32.61■■■□□ 2.81
VPS29-206ENST00000549578 SCAPERQ9BY12 1400 aa32.61■■■□□ 2.81
VPS29-206ENST00000549578 ARHGEF12Q9NZN5 1544 aa32.59■■■□□ 2.81
VPS29-206ENST00000549578 KDM6BO15054 1643 aa32.59■■■□□ 2.81
VPS29-206ENST00000549578 SYCP2Q9BX26 1530 aa32.59■■■□□ 2.81
VPS29-206ENST00000549578 PLEKHH2Q8IVE3 1493 aa32.57■■■□□ 2.8
VPS29-206ENST00000549578 DENND4BO75064 1496 aaPredicted RBP32.56■■■□□ 2.8
VPS29-206ENST00000549578 HNRNPMP52272 730 aaKnown RBP eCLIP32.55■■■□□ 2.8
VPS29-206ENST00000549578 KIAA1107Q9UPP5 1409 aa32.55■■■□□ 2.8
VPS29-206ENST00000549578 TCOF1Q13428 1488 aaKnown RBP32.54■■■□□ 2.8
VPS29-206ENST00000549578 RAPGEF3O95398 923 aa32.53■■■□□ 2.8
VPS29-206ENST00000549578 POGZQ7Z3K3 1410 aa32.51■■■□□ 2.79
VPS29-206ENST00000549578 TRAPPC8Q9Y2L5 1435 aa32.51■■■□□ 2.79
VPS29-206ENST00000549578 FAM50AQ14320 339 aaKnown RBP32.51■■■□□ 2.79
VPS29-206ENST00000549578 FRMPD1Q5SYB0 1578 aa32.5■■■□□ 2.79
VPS29-206ENST00000549578 MBD5Q9P267 1494 aa32.5■■■□□ 2.79
VPS29-206ENST00000549578 RICTORQ6R327 1708 aa32.5■■■□□ 2.79
VPS29-206ENST00000549578 RRBP1Q9P2E9 1410 aaKnown RBP32.49■■■□□ 2.79
VPS29-206ENST00000549578 AFAP1Q8N556 730 aa32.47■■■□□ 2.79
VPS29-206ENST00000549578 ZNF518AQ6AHZ1 1483 aa32.46■■■□□ 2.79
VPS29-206ENST00000549578 ARHGEF5Q12774 1597 aa32.43■■■□□ 2.78
VPS29-206ENST00000549578 CCDC141Q6ZP82 1450 aa32.41■■■□□ 2.78
VPS29-206ENST00000549578 KDM5CP41229 1560 aa32.41■■■□□ 2.78
VPS29-206ENST00000549578 DNMT1P26358 1616 aaKnown RBP32.37■■■□□ 2.77
VPS29-206ENST00000549578 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.37■■■□□ 2.77
VPS29-206ENST00000549578 RSPH4AQ5TD94 716 aa32.36■■■□□ 2.77
VPS29-206ENST00000549578 ZMYM4Q5VZL5 1548 aa32.36■■■□□ 2.77
VPS29-206ENST00000549578 ABCC5O15440 1437 aa32.35■■■□□ 2.77
VPS29-206ENST00000549578 DAPK1P53355 1430 aa32.35■■■□□ 2.77
VPS29-206ENST00000549578 SPAG9O60271 1321 aaKnown RBP32.33■■■□□ 2.77
VPS29-206ENST00000549578 HECW2Q9P2P5 1572 aa32.32■■■□□ 2.77
VPS29-206ENST00000549578 CROCC2H7BZ55 1655 aa32.32■■■□□ 2.76
VPS29-206ENST00000549578 MYT1LQ9UL68 1186 aa32.31■■■□□ 2.76
VPS29-206ENST00000549578 MLH3Q9UHC1 1453 aa32.29■■■□□ 2.76
VPS29-206ENST00000549578 TSPY4P0CV99 314 aa32.29■■■□□ 2.76
VPS29-206ENST00000549578 TSPY10P0CW01 314 aa32.29■■■□□ 2.76
VPS29-206ENST00000549578 ITGAEP38570 1179 aa32.29■■■□□ 2.76
VPS29-206ENST00000549578 INO80Q9ULG1 1556 aaPredicted RBP32.28■■■□□ 2.76
VPS29-206ENST00000549578 ZFYVE16Q7Z3T8 1539 aa32.27■■■□□ 2.76
VPS29-206ENST00000549578 C9orf84Q5VXU9 1444 aa32.27■■■□□ 2.76
VPS29-206ENST00000549578 KIDINS220Q9ULH0 1771 aa32.27■■■□□ 2.76
VPS29-206ENST00000549578 ATP7AQ04656 1500 aa32.27■■■□□ 2.76
VPS29-206ENST00000549578 YEATS2Q9ULM3 1422 aa32.26■■■□□ 2.76
VPS29-206ENST00000549578 MAGI2Q86UL8 1455 aa32.26■■■□□ 2.76
VPS29-206ENST00000549578 SHANK2Q9UPX8 1470 aa32.25■■■□□ 2.75
VPS29-206ENST00000549578 PTPRKQ15262 1439 aa32.25■■■□□ 2.75
VPS29-206ENST00000549578 MAST1Q9Y2H9 1570 aa32.24■■■□□ 2.75
VPS29-206ENST00000549578 CHIC2Q9UKJ5 165 aa32.22■■■□□ 2.75
VPS29-206ENST00000549578 RTEL1-TNFRSF6BF6WH68 1400 aa32.22■■■□□ 2.75
VPS29-206ENST00000549578 ARHGEF40Q8TER5 1519 aa32.22■■■□□ 2.75
VPS29-206ENST00000549578 ABCA6Q8N139 1617 aa32.21■■■□□ 2.75
VPS29-206ENST00000549578 DIP2CQ9Y2E4 1556 aa32.18■■■□□ 2.74
VPS29-206ENST00000549578 ADGBQ8N7X0 1667 aa32.14■■■□□ 2.74
VPS29-206ENST00000549578 PLXNC1O60486 1568 aa32.12■■■□□ 2.73
VPS29-206ENST00000549578 ADGRL2O95490 1459 aa32.12■■■□□ 2.73
VPS29-206ENST00000549578 ATP10AO60312 1499 aa32.11■■■□□ 2.73
VPS29-206ENST00000549578 ANKRD30AQ9BXX3 1397 aa32.1■■■□□ 2.73
VPS29-206ENST00000549578 NCOA1Q15788 1441 aa32.09■■■□□ 2.73
VPS29-206ENST00000549578 RRP7BPQ9NSQ0 103 aa32.09■■■□□ 2.73
VPS29-206ENST00000549578 KIF15Q9NS87 1388 aa32.07■■■□□ 2.72
VPS29-206ENST00000549578 ROCK1Q13464 1354 aa32.06■■■□□ 2.72
VPS29-206ENST00000549578 A2MP01023 1474 aa32.05■■■□□ 2.72
VPS29-206ENST00000549578 SIGLEC1Q9BZZ2 1709 aa32.04■■■□□ 2.72
VPS29-206ENST00000549578 REREQ9P2R6 1566 aa32.02■■■□□ 2.72
VPS29-206ENST00000549578 TRIM26Q12899 539 aaPredicted RBP32.01■■■□□ 2.72
VPS29-206ENST00000549578 DHX29Q7Z478 1369 aaKnown RBP32■■■□□ 2.71
VPS29-206ENST00000549578 DUOX2Q9NRD8 1548 aa31.99■■■□□ 2.71
VPS29-206ENST00000549578 ARID4BQ4LE39 1312 aaPredicted RBP31.94■■■□□ 2.7
VPS29-206ENST00000549578 AGLP35573 1532 aa31.92■■■□□ 2.7
VPS29-206ENST00000549578 HFM1A2PYH4 1435 aa31.91■■■□□ 2.7
VPS29-206ENST00000549578 NAIPQ13075 1403 aa31.91■■■□□ 2.7
VPS29-206ENST00000549578 ERBINQ96RT1 1412 aa31.9■■■□□ 2.7
VPS29-206ENST00000549578 ANKRD50Q9ULJ7 1429 aa31.9■■■□□ 2.7
VPS29-206ENST00000549578 GCC2Q8IWJ2 1684 aa31.9■■■□□ 2.7
VPS29-206ENST00000549578 KIF3BO15066 747 aa31.87■■■□□ 2.69
VPS29-206ENST00000549578 EIF2AK4Q9P2K8 1649 aaKnown RBP31.87■■■□□ 2.69
VPS29-206ENST00000549578 MLECQ14165 292 aa31.85■■■□□ 2.69
VPS29-206ENST00000549578 BCORL1Q5H9F3 1711 aa31.84■■■□□ 2.69
VPS29-206ENST00000549578 GGT6Q6P531 493 aa31.8■■■□□ 2.68
VPS29-206ENST00000549578 RNF17Q9BXT8 1623 aaKnown RBP31.78■■■□□ 2.68
VPS29-206ENST00000549578 SETD5Q9C0A6 1442 aa31.76■■■□□ 2.68
VPS29-206ENST00000549578 MROH1Q8NDA8 1641 aa31.74■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms