RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	GLI2	P10070	1586 aa		12.87	□□□□□ -0.35
SNHG1-223	ENST00000545440	SPOCK2	Q92563	424 aa		12.87	□□□□□ -0.35
SNHG1-223	ENST00000545440	PLB1	Q6P1J6	1458 aa		12.86	□□□□□ -0.35
SNHG1-223	ENST00000545440	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.86	□□□□□ -0.35
SNHG1-223	ENST00000545440	PPRC1	Q5VV67	1664 aa	Known RBP	12.86	□□□□□ -0.35
SNHG1-223	ENST00000545440	MAP3K4	Q9Y6R4	1608 aa		12.84	□□□□□ -0.35
SNHG1-223	ENST00000545440	ASXL2	Q76L83	1435 aa		12.84	□□□□□ -0.35
SNHG1-223	ENST00000545440	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.84	□□□□□ -0.35
SNHG1-223	ENST00000545440	EFCAB5	A4FU69	1503 aa		12.82	□□□□□ -0.36
SNHG1-223	ENST00000545440	KDM6B	O15054	1643 aa		12.81	□□□□□ -0.36
SNHG1-223	ENST00000545440	RAPGEF6	Q8TEU7	1601 aa		12.81	□□□□□ -0.36
SNHG1-223	ENST00000545440	FAM69C	Q0P6D2	419 aa		12.81	□□□□□ -0.36
SNHG1-223	ENST00000545440	CFAP43	Q8NDM7	1665 aa		12.8	□□□□□ -0.36
SNHG1-223	ENST00000545440	WDR7	Q9Y4E6	1490 aa		12.79	□□□□□ -0.36
SNHG1-223	ENST00000545440	EPRS	P07814	1512 aa	Known RBP	12.79	□□□□□ -0.36
SNHG1-223	ENST00000545440	CLEC11A	Q9Y240	323 aa		12.77	□□□□□ -0.37
SNHG1-223	ENST00000545440	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.74	□□□□□ -0.37
SNHG1-223	ENST00000545440	TEX14	Q8IWB6	1497 aa		12.73	□□□□□ -0.37
SNHG1-223	ENST00000545440	SLC24A1	O60721	1099 aa		12.72	□□□□□ -0.37
SNHG1-223	ENST00000545440	PRR29	P0C7W0	189 aa		12.72	□□□□□ -0.37
SNHG1-223	ENST00000545440	FHOD3	Q2V2M9	1422 aa		12.71	□□□□□ -0.37
SNHG1-223	ENST00000545440	ABCA9	Q8IUA7	1624 aa		12.71	□□□□□ -0.37
SNHG1-223	ENST00000545440	REM2	Q8IYK8	340 aa	Predicted RBP	12.7	□□□□□ -0.38
SNHG1-223	ENST00000545440	ATP10B	O94823	1461 aa		12.7	□□□□□ -0.38
SNHG1-223	ENST00000545440	NUP153	P49790	1475 aa	Known RBP	12.7	□□□□□ -0.38
SNHG1-223	ENST00000545440	P3H3	Q8IVL6	736 aa		12.68	□□□□□ -0.38
SNHG1-223	ENST00000545440	MAGI3	Q5TCQ9	1506 aa		12.67	□□□□□ -0.38
SNHG1-223	ENST00000545440	HECW1	Q76N89	1606 aa		12.67	□□□□□ -0.38
SNHG1-223	ENST00000545440	ARHGAP35	Q9NRY4	1499 aa		12.65	□□□□□ -0.38
SNHG1-223	ENST00000545440	LRRIQ1	Q96JM4	1722 aa		12.65	□□□□□ -0.38
SNHG1-223	ENST00000545440	ECM2	O94769	699 aa	Predicted RBP	12.64	□□□□□ -0.39
SNHG1-223	ENST00000545440	CD109	Q6YHK3	1445 aa		12.63	□□□□□ -0.39
SNHG1-223	ENST00000545440	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.63	□□□□□ -0.39
SNHG1-223	ENST00000545440	FMN1	Q68DA7	1419 aa		12.62	□□□□□ -0.39
SNHG1-223	ENST00000545440	UBTF	P17480	764 aa	Known RBP	12.62	□□□□□ -0.39
SNHG1-223	ENST00000545440	CFAP74	Q9C0B2	1584 aa		12.61	□□□□□ -0.39
SNHG1-223	ENST00000545440	RANGAP1	P46060	587 aa	Predicted RBP	12.61	□□□□□ -0.39
SNHG1-223	ENST00000545440	COL17A1	Q9UMD9	1497 aa	Predicted RBP	12.6	□□□□□ -0.39
SNHG1-223	ENST00000545440	PKD2	Q13563	968 aa		12.6	□□□□□ -0.39
SNHG1-223	ENST00000545440	CDK13	Q14004	1512 aa	Known RBP	12.59	□□□□□ -0.39
SNHG1-223	ENST00000545440	ARID3C	A6NKF2	412 aa		12.59	□□□□□ -0.39
SNHG1-223	ENST00000545440	PCF11	O94913	1555 aa	Known RBP	12.59	□□□□□ -0.39
SNHG1-223	ENST00000545440	TTC37	Q6PGP7	1564 aa		12.59	□□□□□ -0.39
SNHG1-223	ENST00000545440	MYO5C	Q9NQX4	1742 aa		12.59	□□□□□ -0.39
SNHG1-223	ENST00000545440	ARAP3	Q8WWN8	1544 aa		12.57	□□□□□ -0.4
SNHG1-223	ENST00000545440	KCNH8	Q96L42	1107 aa		12.57	□□□□□ -0.4
SNHG1-223	ENST00000545440	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	12.57	□□□□□ -0.4
SNHG1-223	ENST00000545440	GSE1	Q14687	1217 aa		12.56	□□□□□ -0.4
SNHG1-223	ENST00000545440	NEO1	Q92859	1461 aa		12.56	□□□□□ -0.4
SNHG1-223	ENST00000545440	RICTOR	Q6R327	1708 aa		12.55	□□□□□ -0.4
SNHG1-223	ENST00000545440	KIF14	Q15058	1648 aa		12.55	□□□□□ -0.4
SNHG1-223	ENST00000545440	PHLDB1	Q86UU1	1377 aa		12.55	□□□□□ -0.4
SNHG1-223	ENST00000545440	FRMPD1	Q5SYB0	1578 aa		12.54	□□□□□ -0.4
SNHG1-223	ENST00000545440	CCDC18	Q5T9S5	1454 aa		12.53	□□□□□ -0.4
SNHG1-223	ENST00000545440	FYCO1	Q9BQS8	1478 aa		12.52	□□□□□ -0.41
SNHG1-223	ENST00000545440	PLEKHD1	A6NEE1	506 aa		12.51	□□□□□ -0.41
SNHG1-223	ENST00000545440	PITPNM1	O00562	1244 aa		12.51	□□□□□ -0.41
SNHG1-223	ENST00000545440	CASKIN1	Q8WXD9	1431 aa		12.51	□□□□□ -0.41
SNHG1-223	ENST00000545440	CLIP1	P30622	1438 aa		12.5	□□□□□ -0.41
SNHG1-223	ENST00000545440	FANCA	O15360	1455 aa		12.49	□□□□□ -0.41
SNHG1-223	ENST00000545440	ADGRL1	O94910	1474 aa		12.49	□□□□□ -0.41
SNHG1-223	ENST00000545440	DCAF8	Q5TAQ9	597 aa		12.49	□□□□□ -0.41
SNHG1-223	ENST00000545440	FAM212A	Q96EL1	285 aa		12.49	□□□□□ -0.41
SNHG1-223	ENST00000545440	CDC42BPB	Q9Y5S2	1711 aa		12.48	□□□□□ -0.41
SNHG1-223	ENST00000545440	PREX2	Q70Z35	1606 aa		12.48	□□□□□ -0.41
SNHG1-223	ENST00000545440	CDC42BPA	Q5VT25	1732 aa		12.48	□□□□□ -0.41
SNHG1-223	ENST00000545440	ZMYM4	Q5VZL5	1548 aa		12.47	□□□□□ -0.41
SNHG1-223	ENST00000545440	ARHGEF40	Q8TER5	1519 aa		12.47	□□□□□ -0.41
SNHG1-223	ENST00000545440	TRO	Q12816	1431 aa	Predicted RBP	12.47	□□□□□ -0.41
SNHG1-223	ENST00000545440	CREBZF	Q9NS37	354 aa		12.47	□□□□□ -0.41
SNHG1-223	ENST00000545440	TAOK2	Q9UL54	1235 aa		12.46	□□□□□ -0.41
SNHG1-223	ENST00000545440	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.45	□□□□□ -0.42
SNHG1-223	ENST00000545440	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.44	□□□□□ -0.42
SNHG1-223	ENST00000545440	PLCH2	O75038	1416 aa		12.44	□□□□□ -0.42
SNHG1-223	ENST00000545440	AKNA	Q7Z591	1439 aa		12.44	□□□□□ -0.42
SNHG1-223	ENST00000545440	DENND4B	O75064	1496 aa	Predicted RBP	12.43	□□□□□ -0.42
SNHG1-223	ENST00000545440	KDM4F	A0A1W2PPD8	638 aa		12.43	□□□□□ -0.42
SNHG1-223	ENST00000545440	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.42	□□□□□ -0.42
SNHG1-223	ENST00000545440	BCORL1	Q5H9F3	1711 aa		12.42	□□□□□ -0.42
SNHG1-223	ENST00000545440	ADAMTSL3	P82987	1691 aa		12.42	□□□□□ -0.42
SNHG1-223	ENST00000545440	ITSN2	Q9NZM3	1697 aa		12.42	□□□□□ -0.42
SNHG1-223	ENST00000545440	CEP162	Q5TB80	1403 aa		12.41	□□□□□ -0.42
SNHG1-223	ENST00000545440	ARHGAP5	Q13017	1502 aa		12.41	□□□□□ -0.42
SNHG1-223	ENST00000545440	POGZ	Q7Z3K3	1410 aa		12.4	□□□□□ -0.42
SNHG1-223	ENST00000545440	KDM5C	P41229	1560 aa		12.39	□□□□□ -0.43
SNHG1-223	ENST00000545440	ZFYVE16	Q7Z3T8	1539 aa		12.39	□□□□□ -0.43
SNHG1-223	ENST00000545440	NUBP1	P53384	320 aa		12.39	□□□□□ -0.43
SNHG1-223	ENST00000545440	SIGLEC1	Q9BZZ2	1709 aa		12.39	□□□□□ -0.43
SNHG1-223	ENST00000545440	MAGI2	Q86UL8	1455 aa		12.39	□□□□□ -0.43
SNHG1-223	ENST00000545440	ABCC1	P33527	1531 aa		12.38	□□□□□ -0.43
SNHG1-223	ENST00000545440	HECW2	Q9P2P5	1572 aa		12.38	□□□□□ -0.43
SNHG1-223	ENST00000545440	RAPGEF3	O95398	923 aa		12.37	□□□□□ -0.43
SNHG1-223	ENST00000545440	PLCB2	Q00722	1185 aa		12.37	□□□□□ -0.43
SNHG1-223	ENST00000545440	EHBP1L1	Q8N3D4	1523 aa		12.37	□□□□□ -0.43
SNHG1-223	ENST00000545440	ZNF518A	Q6AHZ1	1483 aa		12.36	□□□□□ -0.43
SNHG1-223	ENST00000545440	RGL2	O15211	777 aa		12.36	□□□□□ -0.43
SNHG1-223	ENST00000545440	MADD	Q8WXG6	1647 aa		12.36	□□□□□ -0.43
SNHG1-223	ENST00000545440	FER1L4	A9Z1Z3	1794 aa		12.35	□□□□□ -0.43
SNHG1-223	ENST00000545440	BBX	Q8WY36	941 aa	Predicted RBP	12.35	□□□□□ -0.43
SNHG1-223	ENST00000545440	SCAPER	Q9BY12	1400 aa		12.35	□□□□□ -0.43

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