RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 MYO5CQ9NQX4 1742 aa18.86■□□□□ 0.61
DDX55-210ENST00000543016 CFDP1Q9UEE9 299 aaPredicted RBP18.85■□□□□ 0.61
DDX55-210ENST00000543016 FANCAO15360 1455 aa18.84■□□□□ 0.61
DDX55-210ENST00000543016 CFAP74Q9C0B2 1584 aa18.84■□□□□ 0.61
DDX55-210ENST00000543016 PPRC1Q5VV67 1664 aaKnown RBP18.83■□□□□ 0.61
DDX55-210ENST00000543016 TSPOAP1O95153 1857 aa18.83■□□□□ 0.6
DDX55-210ENST00000543016 ARHGAP5Q13017 1502 aa18.82■□□□□ 0.6
DDX55-210ENST00000543016 PREX2Q70Z35 1606 aa18.82■□□□□ 0.6
DDX55-210ENST00000543016 AKNAQ7Z591 1439 aa18.81■□□□□ 0.6
DDX55-210ENST00000543016 MIA2Q96PC5 1412 aa18.81■□□□□ 0.6
DDX55-210ENST00000543016 ITSN2Q9NZM3 1697 aa18.8■□□□□ 0.6
DDX55-210ENST00000543016 MYOM3Q5VTT5 1437 aa18.8■□□□□ 0.6
DDX55-210ENST00000543016 CDC42BPAQ5VT25 1732 aa18.79■□□□□ 0.6
DDX55-210ENST00000543016 PLEKHH2Q8IVE3 1493 aa18.78■□□□□ 0.6
DDX55-210ENST00000543016 CDC42BPBQ9Y5S2 1711 aa18.77■□□□□ 0.59
DDX55-210ENST00000543016 KIAA1107Q9UPP5 1409 aa18.76■□□□□ 0.59
DDX55-210ENST00000543016 RSPH4AQ5TD94 716 aa18.75■□□□□ 0.59
DDX55-210ENST00000543016 ADGRL1O94910 1474 aa18.75■□□□□ 0.59
DDX55-210ENST00000543016 ZNF777Q9ULD5 760 aaPredicted RBP18.74■□□□□ 0.59
DDX55-210ENST00000543016 DENND4BO75064 1496 aaPredicted RBP18.73■□□□□ 0.59
DDX55-210ENST00000543016 SCAPERQ9BY12 1400 aa18.73■□□□□ 0.59
DDX55-210ENST00000543016 FGD6Q6ZV73 1430 aa18.71■□□□□ 0.59
DDX55-210ENST00000543016 PPARGC1BQ86YN6 1023 aaKnown RBP18.7■□□□□ 0.58
DDX55-210ENST00000543016 KDM6BO15054 1643 aa18.7■□□□□ 0.58
DDX55-210ENST00000543016 ABCC1P33527 1531 aa18.69■□□□□ 0.58
DDX55-210ENST00000543016 SAMD9LQ8IVG5 1584 aa18.68■□□□□ 0.58
DDX55-210ENST00000543016 COL17A1Q9UMD9 1497 aaPredicted RBP18.68■□□□□ 0.58
DDX55-210ENST00000543016 POGZQ7Z3K3 1410 aa18.67■□□□□ 0.58
DDX55-210ENST00000543016 CAMSAP2Q08AD1 1489 aa18.67■□□□□ 0.58
DDX55-210ENST00000543016 ZNF518AQ6AHZ1 1483 aa18.67■□□□□ 0.58
DDX55-210ENST00000543016 ZNF644Q9H582 1327 aaPredicted RBP18.67■□□□□ 0.58
DDX55-210ENST00000543016 TCOF1Q13428 1488 aaKnown RBP18.66■□□□□ 0.58
DDX55-210ENST00000543016 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.66■□□□□ 0.58
DDX55-210ENST00000543016 RAPGEF3O95398 923 aa18.65■□□□□ 0.58
DDX55-210ENST00000543016 HNRNPMP52272 730 aaKnown RBP eCLIP18.65■□□□□ 0.58
DDX55-210ENST00000543016 MAGI2Q86UL8 1455 aa18.64■□□□□ 0.57
DDX55-210ENST00000543016 MBD5Q9P267 1494 aa18.64■□□□□ 0.57
DDX55-210ENST00000543016 ARHGEF12Q9NZN5 1544 aa18.64■□□□□ 0.57
DDX55-210ENST00000543016 PTPN23Q9H3S7 1636 aa18.63■□□□□ 0.57
DDX55-210ENST00000543016 SYCP2Q9BX26 1530 aa18.63■□□□□ 0.57
DDX55-210ENST00000543016 AFAP1Q8N556 730 aa18.62■□□□□ 0.57
DDX55-210ENST00000543016 RRBP1Q9P2E9 1410 aaKnown RBP18.62■□□□□ 0.57
DDX55-210ENST00000543016 ARHGEF5Q12774 1597 aa18.62■□□□□ 0.57
DDX55-210ENST00000543016 TRAPPC8Q9Y2L5 1435 aa18.61■□□□□ 0.57
DDX55-210ENST00000543016 TSPY4P0CV99 314 aa18.61■□□□□ 0.57
DDX55-210ENST00000543016 TSPY10P0CW01 314 aa18.61■□□□□ 0.57
DDX55-210ENST00000543016 ZMYM4Q5VZL5 1548 aa18.6■□□□□ 0.57
DDX55-210ENST00000543016 CCDC141Q6ZP82 1450 aa18.6■□□□□ 0.57
DDX55-210ENST00000543016 RICTORQ6R327 1708 aa18.6■□□□□ 0.57
DDX55-210ENST00000543016 KDM5CP41229 1560 aa18.59■□□□□ 0.57
DDX55-210ENST00000543016 MLH3Q9UHC1 1453 aa18.59■□□□□ 0.57
DDX55-210ENST00000543016 FAM50AQ14320 339 aaKnown RBP18.59■□□□□ 0.57
DDX55-210ENST00000543016 SPAG9O60271 1321 aaKnown RBP18.58■□□□□ 0.57
DDX55-210ENST00000543016 FRMPD1Q5SYB0 1578 aa18.58■□□□□ 0.56
DDX55-210ENST00000543016 RTEL1-TNFRSF6BF6WH68 1400 aa18.57■□□□□ 0.56
DDX55-210ENST00000543016 PPP6R1Q9UPN7 881 aa18.57■□□□□ 0.56
DDX55-210ENST00000543016 MYT1LQ9UL68 1186 aa18.54■□□□□ 0.56
DDX55-210ENST00000543016 ABCC5O15440 1437 aa18.54■□□□□ 0.56
DDX55-210ENST00000543016 SHANK2Q9UPX8 1470 aa18.53■□□□□ 0.56
DDX55-210ENST00000543016 DAPK1P53355 1430 aa18.53■□□□□ 0.56
DDX55-210ENST00000543016 HECW2Q9P2P5 1572 aa18.52■□□□□ 0.56
DDX55-210ENST00000543016 DNMT1P26358 1616 aaKnown RBP18.52■□□□□ 0.55
DDX55-210ENST00000543016 ZFYVE16Q7Z3T8 1539 aa18.51■□□□□ 0.55
DDX55-210ENST00000543016 C9orf84Q5VXU9 1444 aa18.5■□□□□ 0.55
DDX55-210ENST00000543016 MAST1Q9Y2H9 1570 aa18.5■□□□□ 0.55
DDX55-210ENST00000543016 ATP7AQ04656 1500 aa18.49■□□□□ 0.55
DDX55-210ENST00000543016 ATP10AO60312 1499 aa18.49■□□□□ 0.55
DDX55-210ENST00000543016 INO80Q9ULG1 1556 aaPredicted RBP18.48■□□□□ 0.55
DDX55-210ENST00000543016 ADRA2BP18089 450 aa18.48■□□□□ 0.55
DDX55-210ENST00000543016 ARHGEF40Q8TER5 1519 aa18.48■□□□□ 0.55
DDX55-210ENST00000543016 YEATS2Q9ULM3 1422 aa18.47■□□□□ 0.55
DDX55-210ENST00000543016 ANKRD30AQ9BXX3 1397 aa18.46■□□□□ 0.55
DDX55-210ENST00000543016 KIDINS220Q9ULH0 1771 aa18.46■□□□□ 0.55
DDX55-210ENST00000543016 ROCK1Q13464 1354 aa18.45■□□□□ 0.54
DDX55-210ENST00000543016 REREQ9P2R6 1566 aa18.44■□□□□ 0.54
DDX55-210ENST00000543016 ADGRL2O95490 1459 aa18.44■□□□□ 0.54
DDX55-210ENST00000543016 CROCC2H7BZ55 1655 aa18.44■□□□□ 0.54
DDX55-210ENST00000543016 DIP2CQ9Y2E4 1556 aa18.42■□□□□ 0.54
DDX55-210ENST00000543016 NCOA1Q15788 1441 aa18.42■□□□□ 0.54
DDX55-210ENST00000543016 PLXNC1O60486 1568 aa18.42■□□□□ 0.54
DDX55-210ENST00000543016 DHX29Q7Z478 1369 aaKnown RBP18.42■□□□□ 0.54
DDX55-210ENST00000543016 A2MP01023 1474 aa18.41■□□□□ 0.54
DDX55-210ENST00000543016 ITGAEP38570 1179 aa18.4■□□□□ 0.54
DDX55-210ENST00000543016 CHIC2Q9UKJ5 165 aa18.4■□□□□ 0.54
DDX55-210ENST00000543016 ABCA6Q8N139 1617 aa18.4■□□□□ 0.54
DDX55-210ENST00000543016 PTPRKQ15262 1439 aa18.4■□□□□ 0.54
DDX55-210ENST00000543016 ADGBQ8N7X0 1667 aa18.39■□□□□ 0.53
DDX55-210ENST00000543016 KIF15Q9NS87 1388 aa18.39■□□□□ 0.53
DDX55-210ENST00000543016 AGLP35573 1532 aa18.39■□□□□ 0.53
DDX55-210ENST00000543016 DUOX2Q9NRD8 1548 aa18.38■□□□□ 0.53
DDX55-210ENST00000543016 RRP7BPQ9NSQ0 103 aa18.37■□□□□ 0.53
DDX55-210ENST00000543016 ARID4BQ4LE39 1312 aaPredicted RBP18.36■□□□□ 0.53
DDX55-210ENST00000543016 ERBINQ96RT1 1412 aa18.35■□□□□ 0.53
DDX55-210ENST00000543016 TRIM26Q12899 539 aaPredicted RBP18.33■□□□□ 0.52
DDX55-210ENST00000543016 ACIN1Q9UKV3 1341 aaKnown RBP18.32■□□□□ 0.52
DDX55-210ENST00000543016 ANKRD50Q9ULJ7 1429 aa18.32■□□□□ 0.52
DDX55-210ENST00000543016 KIF3BO15066 747 aa18.3■□□□□ 0.52
DDX55-210ENST00000543016 HFM1A2PYH4 1435 aa18.3■□□□□ 0.52
DDX55-210ENST00000543016 EIF2AK4Q9P2K8 1649 aaKnown RBP18.29■□□□□ 0.52
DDX55-210ENST00000543016 BCORL1Q5H9F3 1711 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms