RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 WDR7Q9Y4E6 1490 aa16.32■□□□□ 0.2
LEMD3-202ENST00000539442 MYOM3Q5VTT5 1437 aa16.31■□□□□ 0.2
LEMD3-202ENST00000539442 ASXL2Q76L83 1435 aa16.29■□□□□ 0.2
LEMD3-202ENST00000539442 ABCC10Q5T3U5 1492 aa16.29■□□□□ 0.2
LEMD3-202ENST00000539442 CCNB3Q8WWL7 1395 aa16.28■□□□□ 0.2
LEMD3-202ENST00000539442 MAPKBP1O60336 1514 aa16.28■□□□□ 0.2
LEMD3-202ENST00000539442 FGD6Q6ZV73 1430 aa16.27■□□□□ 0.19
LEMD3-202ENST00000539442 MIA2Q96PC5 1412 aa16.27■□□□□ 0.19
LEMD3-202ENST00000539442 DNAJC5Q9H3Z4 198 aa16.26■□□□□ 0.19
LEMD3-202ENST00000539442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.25■□□□□ 0.19
LEMD3-202ENST00000539442 ITSN2Q9NZM3 1697 aa16.24■□□□□ 0.19
LEMD3-202ENST00000539442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.24■□□□□ 0.19
LEMD3-202ENST00000539442 GPATCH8Q9UKJ3 1502 aaKnown RBP16.24■□□□□ 0.19
LEMD3-202ENST00000539442 PCGF6Q9BYE7 350 aa16.22■□□□□ 0.19
LEMD3-202ENST00000539442 TCOF1Q13428 1488 aaKnown RBP16.22■□□□□ 0.19
LEMD3-202ENST00000539442 KCNH8Q96L42 1107 aa16.21■□□□□ 0.19
LEMD3-202ENST00000539442 TTC37Q6PGP7 1564 aa16.21■□□□□ 0.18
LEMD3-202ENST00000539442 PREX2Q70Z35 1606 aa16.19■□□□□ 0.18
LEMD3-202ENST00000539442 ABCA9Q8IUA7 1624 aa16.19■□□□□ 0.18
LEMD3-202ENST00000539442 PTPN23Q9H3S7 1636 aa16.19■□□□□ 0.18
LEMD3-202ENST00000539442 SPINK5Q9NQ38 1064 aaPredicted RBP16.18■□□□□ 0.18
LEMD3-202ENST00000539442 CFDP1Q9UEE9 299 aaPredicted RBP16.18■□□□□ 0.18
LEMD3-202ENST00000539442 CDC42BPAQ5VT25 1732 aa16.18■□□□□ 0.18
LEMD3-202ENST00000539442 ARAP3Q8WWN8 1544 aa16.18■□□□□ 0.18
LEMD3-202ENST00000539442 PLCH2O75038 1416 aa16.17■□□□□ 0.18
LEMD3-202ENST00000539442 MYO5CQ9NQX4 1742 aa16.16■□□□□ 0.18
LEMD3-202ENST00000539442 FAM50AQ14320 339 aaKnown RBP16.15■□□□□ 0.18
LEMD3-202ENST00000539442 GLI2P10070 1586 aa16.14■□□□□ 0.17
LEMD3-202ENST00000539442 CAMSAP2Q08AD1 1489 aa16.14■□□□□ 0.17
LEMD3-202ENST00000539442 ARHGAP5Q13017 1502 aa16.13■□□□□ 0.17
LEMD3-202ENST00000539442 CDC42BPBQ9Y5S2 1711 aa16.12■□□□□ 0.17
LEMD3-202ENST00000539442 PLEKHH2Q8IVE3 1493 aa16.1■□□□□ 0.17
LEMD3-202ENST00000539442 DIP2BQ9P265 1576 aa16.1■□□□□ 0.17
LEMD3-202ENST00000539442 CD109Q6YHK3 1445 aa16.1■□□□□ 0.17
LEMD3-202ENST00000539442 EFCAB2Q5VUJ9 269 aa16.09■□□□□ 0.17
LEMD3-202ENST00000539442 ZNF777Q9ULD5 760 aaPredicted RBP16.08■□□□□ 0.16
LEMD3-202ENST00000539442 ZNF644Q9H582 1327 aaPredicted RBP16.08■□□□□ 0.16
LEMD3-202ENST00000539442 KIAA1107Q9UPP5 1409 aa16.08■□□□□ 0.16
LEMD3-202ENST00000539442 SAMD9LQ8IVG5 1584 aa16.08■□□□□ 0.16
LEMD3-202ENST00000539442 MAP3K4Q9Y6R4 1608 aa16.07■□□□□ 0.16
LEMD3-202ENST00000539442 DNMT1P26358 1616 aaKnown RBP16.06■□□□□ 0.16
LEMD3-202ENST00000539442 FANCAO15360 1455 aa16.06■□□□□ 0.16
LEMD3-202ENST00000539442 SP7Q8TDD2 431 aaPredicted RBP16.06■□□□□ 0.16
LEMD3-202ENST00000539442 ARHGEF5Q12774 1597 aa16.05■□□□□ 0.16
LEMD3-202ENST00000539442 CFAP74Q9C0B2 1584 aa16.05■□□□□ 0.16
LEMD3-202ENST00000539442 DAPK1P53355 1430 aa16.05■□□□□ 0.16
LEMD3-202ENST00000539442 RSPH4AQ5TD94 716 aa16.05■□□□□ 0.16
LEMD3-202ENST00000539442 U3KPZ7 1027 aaPredicted RBP16.05■□□□□ 0.16
LEMD3-202ENST00000539442 FAM69CQ0P6D2 419 aa16.04■□□□□ 0.16
LEMD3-202ENST00000539442 ABCC1P33527 1531 aa16.04■□□□□ 0.16
LEMD3-202ENST00000539442 MBD5Q9P267 1494 aa16.03■□□□□ 0.16
LEMD3-202ENST00000539442 ABCC5O15440 1437 aa16.03■□□□□ 0.16
LEMD3-202ENST00000539442 ITGAEP38570 1179 aa16.03■□□□□ 0.16
LEMD3-202ENST00000539442 NEO1Q92859 1461 aa16.03■□□□□ 0.16
LEMD3-202ENST00000539442 SHANK2Q9UPX8 1470 aa16.03■□□□□ 0.16
LEMD3-202ENST00000539442 SYCP2Q9BX26 1530 aa16.02■□□□□ 0.15
LEMD3-202ENST00000539442 CCDC141Q6ZP82 1450 aa16.02■□□□□ 0.15
LEMD3-202ENST00000539442 PTPRKQ15262 1439 aa16.02■□□□□ 0.15
LEMD3-202ENST00000539442 AKNAQ7Z591 1439 aa16.02■□□□□ 0.15
LEMD3-202ENST00000539442 ROCK1Q13464 1354 aa16■□□□□ 0.15
LEMD3-202ENST00000539442 CROCC2H7BZ55 1655 aa15.99■□□□□ 0.15
LEMD3-202ENST00000539442 ADGRL1O94910 1474 aa15.99■□□□□ 0.15
LEMD3-202ENST00000539442 TEX14Q8IWB6 1497 aa15.98■□□□□ 0.15
LEMD3-202ENST00000539442 HNRNPMP52272 730 aaKnown RBP eCLIP15.98■□□□□ 0.15
LEMD3-202ENST00000539442 KIF13AQ9H1H9 1805 aa15.98■□□□□ 0.15
LEMD3-202ENST00000539442 ARHGEF12Q9NZN5 1544 aa15.98■□□□□ 0.15
LEMD3-202ENST00000539442 ADGRL2O95490 1459 aa15.97■□□□□ 0.15
LEMD3-202ENST00000539442 HFM1A2PYH4 1435 aa15.97■□□□□ 0.15
LEMD3-202ENST00000539442 C9orf84Q5VXU9 1444 aa15.96■□□□□ 0.15
LEMD3-202ENST00000539442 TSPY4P0CV99 314 aa15.96■□□□□ 0.15
LEMD3-202ENST00000539442 TSPY10P0CW01 314 aa15.96■□□□□ 0.15
LEMD3-202ENST00000539442 CHRDL2Q6WN34 429 aa15.96■□□□□ 0.15
LEMD3-202ENST00000539442 MAST1Q9Y2H9 1570 aa15.96■□□□□ 0.14
LEMD3-202ENST00000539442 SCAPERQ9BY12 1400 aa15.95■□□□□ 0.14
LEMD3-202ENST00000539442 SETD5Q9C0A6 1442 aa15.94■□□□□ 0.14
LEMD3-202ENST00000539442 TRAPPC8Q9Y2L5 1435 aa15.94■□□□□ 0.14
LEMD3-202ENST00000539442 PPRC1Q5VV67 1664 aaKnown RBP15.93■□□□□ 0.14
LEMD3-202ENST00000539442 ADGBQ8N7X0 1667 aa15.93■□□□□ 0.14
LEMD3-202ENST00000539442 ANKRD30AQ9BXX3 1397 aa15.93■□□□□ 0.14
LEMD3-202ENST00000539442 NAIPQ13075 1403 aa15.93■□□□□ 0.14
LEMD3-202ENST00000539442 ZNF518AQ6AHZ1 1483 aa15.92■□□□□ 0.14
LEMD3-202ENST00000539442 NCBP3Q53F19 620 aaKnown RBP15.92■□□□□ 0.14
LEMD3-202ENST00000539442 RBM42Q9BTD8 480 aaKnown RBP15.92■□□□□ 0.14
LEMD3-202ENST00000539442 CHIC2Q9UKJ5 165 aa15.92■□□□□ 0.14
LEMD3-202ENST00000539442 NCOA1Q15788 1441 aa15.92■□□□□ 0.14
LEMD3-202ENST00000539442 POGZQ7Z3K3 1410 aa15.92■□□□□ 0.14
LEMD3-202ENST00000539442 HRCP23327 699 aa15.91■□□□□ 0.14
LEMD3-202ENST00000539442 GCC2Q8IWJ2 1684 aa15.91■□□□□ 0.14
LEMD3-202ENST00000539442 RTEL1-TNFRSF6BF6WH68 1400 aa15.91■□□□□ 0.14
LEMD3-202ENST00000539442 DENND4BO75064 1496 aaPredicted RBP15.91■□□□□ 0.14
LEMD3-202ENST00000539442 RAB3GAP2Q9H2M9 1393 aa15.89■□□□□ 0.13
LEMD3-202ENST00000539442 PLXNC1O60486 1568 aa15.89■□□□□ 0.13
LEMD3-202ENST00000539442 KDM5CP41229 1560 aa15.88■□□□□ 0.13
LEMD3-202ENST00000539442 RRP7BPQ9NSQ0 103 aa15.88■□□□□ 0.13
LEMD3-202ENST00000539442 SPAG9O60271 1321 aaKnown RBP15.88■□□□□ 0.13
LEMD3-202ENST00000539442 ACIN1Q9UKV3 1341 aaKnown RBP15.88■□□□□ 0.13
LEMD3-202ENST00000539442 AFAP1Q8N556 730 aa15.87■□□□□ 0.13
LEMD3-202ENST00000539442 ZFYVE16Q7Z3T8 1539 aa15.87■□□□□ 0.13
LEMD3-202ENST00000539442 INO80Q9ULG1 1556 aaPredicted RBP15.87■□□□□ 0.13
LEMD3-202ENST00000539442 TSPOAP1O95153 1857 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms