RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 CCNB3Q8WWL7 1395 aa33.34■■■□□ 2.93
CAPN1-220ENST00000530567 ARHGAP5Q13017 1502 aa33.34■■■□□ 2.93
CAPN1-220ENST00000530567 COL17A1Q9UMD9 1497 aaPredicted RBP33.32■■■□□ 2.92
CAPN1-220ENST00000530567 KDM6BO15054 1643 aa33.3■■■□□ 2.92
CAPN1-220ENST00000530567 ITSN2Q9NZM3 1697 aa33.3■■■□□ 2.92
CAPN1-220ENST00000530567 PHLDB1Q86UU1 1377 aa33.29■■■□□ 2.92
CAPN1-220ENST00000530567 AKNAQ7Z591 1439 aa33.29■■■□□ 2.92
CAPN1-220ENST00000530567 EFCAB2Q5VUJ9 269 aa33.27■■■□□ 2.92
CAPN1-220ENST00000530567 SAMD9LQ8IVG5 1584 aa33.22■■■□□ 2.91
CAPN1-220ENST00000530567 ADGRL1O94910 1474 aa33.21■■■□□ 2.91
CAPN1-220ENST00000530567 CFDP1Q9UEE9 299 aaPredicted RBP33.2■■■□□ 2.91
CAPN1-220ENST00000530567 ABCC1P33527 1531 aa33.19■■■□□ 2.9
CAPN1-220ENST00000530567 MYOM3Q5VTT5 1437 aa33.19■■■□□ 2.9
CAPN1-220ENST00000530567 FRMPD1Q5SYB0 1578 aa33.17■■■□□ 2.9
CAPN1-220ENST00000530567 PPARGC1BQ86YN6 1023 aaKnown RBP33.16■■■□□ 2.9
CAPN1-220ENST00000530567 SCAPERQ9BY12 1400 aa33.15■■■□□ 2.9
CAPN1-220ENST00000530567 ARHGEF12Q9NZN5 1544 aa33.14■■■□□ 2.9
CAPN1-220ENST00000530567 DENND4BO75064 1496 aaPredicted RBP33.13■■■□□ 2.89
CAPN1-220ENST00000530567 RICTORQ6R327 1708 aa33.13■■■□□ 2.89
CAPN1-220ENST00000530567 ZNF777Q9ULD5 760 aaPredicted RBP33.11■■■□□ 2.89
CAPN1-220ENST00000530567 MIA2Q96PC5 1412 aa33.11■■■□□ 2.89
CAPN1-220ENST00000530567 ZNF644Q9H582 1327 aaPredicted RBP33.1■■■□□ 2.89
CAPN1-220ENST00000530567 POGZQ7Z3K3 1410 aa33.1■■■□□ 2.89
CAPN1-220ENST00000530567 RAPGEF3O95398 923 aa33.1■■■□□ 2.89
CAPN1-220ENST00000530567 SYCP2Q9BX26 1530 aa33.09■■■□□ 2.89
CAPN1-220ENST00000530567 CAMSAP2Q08AD1 1489 aa33.09■■■□□ 2.89
CAPN1-220ENST00000530567 PLEKHH2Q8IVE3 1493 aa33.08■■■□□ 2.89
CAPN1-220ENST00000530567 KIAA1107Q9UPP5 1409 aa33.08■■■□□ 2.89
CAPN1-220ENST00000530567 FGD6Q6ZV73 1430 aa33.05■■■□□ 2.88
CAPN1-220ENST00000530567 TRAPPC8Q9Y2L5 1435 aa33.05■■■□□ 2.88
CAPN1-220ENST00000530567 ZMYM4Q5VZL5 1548 aa33.02■■■□□ 2.88
CAPN1-220ENST00000530567 MBD5Q9P267 1494 aa33.02■■■□□ 2.88
CAPN1-220ENST00000530567 KDM5CP41229 1560 aa33.01■■■□□ 2.88
CAPN1-220ENST00000530567 ZNF518AQ6AHZ1 1483 aa33.01■■■□□ 2.87
CAPN1-220ENST00000530567 PTPN23Q9H3S7 1636 aa33.01■■■□□ 2.87
CAPN1-220ENST00000530567 TCOF1Q13428 1488 aaKnown RBP32.99■■■□□ 2.87
CAPN1-220ENST00000530567 HNRNPMP52272 730 aaKnown RBP eCLIP32.98■■■□□ 2.87
CAPN1-220ENST00000530567 AFAP1Q8N556 730 aa32.96■■■□□ 2.87
CAPN1-220ENST00000530567 ARHGEF5Q12774 1597 aa32.93■■■□□ 2.86
CAPN1-220ENST00000530567 HECW2Q9P2P5 1572 aa32.89■■■□□ 2.86
CAPN1-220ENST00000530567 CCDC141Q6ZP82 1450 aa32.89■■■□□ 2.86
CAPN1-220ENST00000530567 MAGI2Q86UL8 1455 aa32.89■■■□□ 2.86
CAPN1-220ENST00000530567 ARHGEF40Q8TER5 1519 aa32.88■■■□□ 2.85
CAPN1-220ENST00000530567 MLH3Q9UHC1 1453 aa32.87■■■□□ 2.85
CAPN1-220ENST00000530567 YEATS2Q9ULM3 1422 aa32.86■■■□□ 2.85
CAPN1-220ENST00000530567 ZFYVE16Q7Z3T8 1539 aa32.85■■■□□ 2.85
CAPN1-220ENST00000530567 INO80Q9ULG1 1556 aaPredicted RBP32.84■■■□□ 2.85
CAPN1-220ENST00000530567 KIDINS220Q9ULH0 1771 aa32.84■■■□□ 2.85
CAPN1-220ENST00000530567 RRBP1Q9P2E9 1410 aaKnown RBP32.81■■■□□ 2.84
CAPN1-220ENST00000530567 DNMT1P26358 1616 aaKnown RBP32.81■■■□□ 2.84
CAPN1-220ENST00000530567 RSPH4AQ5TD94 716 aa32.81■■■□□ 2.84
CAPN1-220ENST00000530567 ATP7AQ04656 1500 aa32.79■■■□□ 2.84
CAPN1-220ENST00000530567 SPAG9O60271 1321 aaKnown RBP32.79■■■□□ 2.84
CAPN1-220ENST00000530567 ABCC5O15440 1437 aa32.79■■■□□ 2.84
CAPN1-220ENST00000530567 ABCA6Q8N139 1617 aa32.78■■■□□ 2.84
CAPN1-220ENST00000530567 CROCC2H7BZ55 1655 aa32.78■■■□□ 2.84
CAPN1-220ENST00000530567 DIP2CQ9Y2E4 1556 aa32.78■■■□□ 2.84
CAPN1-220ENST00000530567 FAM50AQ14320 339 aaKnown RBP32.77■■■□□ 2.84
CAPN1-220ENST00000530567 DAPK1P53355 1430 aa32.76■■■□□ 2.83
CAPN1-220ENST00000530567 MAST1Q9Y2H9 1570 aa32.75■■■□□ 2.83
CAPN1-220ENST00000530567 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.75■■■□□ 2.83
CAPN1-220ENST00000530567 RTEL1-TNFRSF6BF6WH68 1400 aa32.74■■■□□ 2.83
CAPN1-220ENST00000530567 SHANK2Q9UPX8 1470 aa32.72■■■□□ 2.83
CAPN1-220ENST00000530567 C9orf84Q5VXU9 1444 aa32.71■■■□□ 2.83
CAPN1-220ENST00000530567 ATP10AO60312 1499 aa32.7■■■□□ 2.83
CAPN1-220ENST00000530567 SIGLEC1Q9BZZ2 1709 aa32.7■■■□□ 2.82
CAPN1-220ENST00000530567 MYT1LQ9UL68 1186 aa32.68■■■□□ 2.82
CAPN1-220ENST00000530567 TSPY4P0CV99 314 aa32.67■■■□□ 2.82
CAPN1-220ENST00000530567 TSPY10P0CW01 314 aa32.67■■■□□ 2.82
CAPN1-220ENST00000530567 REREQ9P2R6 1566 aa32.67■■■□□ 2.82
CAPN1-220ENST00000530567 PTPRKQ15262 1439 aa32.64■■■□□ 2.82
CAPN1-220ENST00000530567 ADGBQ8N7X0 1667 aa32.64■■■□□ 2.82
CAPN1-220ENST00000530567 PLXNC1O60486 1568 aa32.62■■■□□ 2.81
CAPN1-220ENST00000530567 ADGRL2O95490 1459 aa32.58■■■□□ 2.81
CAPN1-220ENST00000530567 A2MP01023 1474 aa32.58■■■□□ 2.81
CAPN1-220ENST00000530567 AGLP35573 1532 aa32.54■■■□□ 2.8
CAPN1-220ENST00000530567 CHIC2Q9UKJ5 165 aa32.53■■■□□ 2.8
CAPN1-220ENST00000530567 NCOA1Q15788 1441 aa32.52■■■□□ 2.8
CAPN1-220ENST00000530567 DHX29Q7Z478 1369 aaKnown RBP32.5■■■□□ 2.79
CAPN1-220ENST00000530567 KIF15Q9NS87 1388 aa32.5■■■□□ 2.79
CAPN1-220ENST00000530567 ITGAEP38570 1179 aa32.5■■■□□ 2.79
CAPN1-220ENST00000530567 ANKRD30AQ9BXX3 1397 aa32.49■■■□□ 2.79
CAPN1-220ENST00000530567 BCORL1Q5H9F3 1711 aa32.48■■■□□ 2.79
CAPN1-220ENST00000530567 ARID4BQ4LE39 1312 aaPredicted RBP32.47■■■□□ 2.79
CAPN1-220ENST00000530567 DUOX2Q9NRD8 1548 aa32.47■■■□□ 2.79
CAPN1-220ENST00000530567 ROCK1Q13464 1354 aa32.46■■■□□ 2.79
CAPN1-220ENST00000530567 RRP7BPQ9NSQ0 103 aa32.45■■■□□ 2.79
CAPN1-220ENST00000530567 ADAMTSL3P82987 1691 aa32.41■■■□□ 2.78
CAPN1-220ENST00000530567 EIF2AK4Q9P2K8 1649 aaKnown RBP32.38■■■□□ 2.77
CAPN1-220ENST00000530567 ERBINQ96RT1 1412 aa32.38■■■□□ 2.77
CAPN1-220ENST00000530567 KDM4FA0A1W2PPD8 638 aa32.36■■■□□ 2.77
CAPN1-220ENST00000530567 MLECQ14165 292 aa32.34■■■□□ 2.77
CAPN1-220ENST00000530567 MADDQ8WXG6 1647 aa32.33■■■□□ 2.77
CAPN1-220ENST00000530567 RNF17Q9BXT8 1623 aaKnown RBP32.33■■■□□ 2.77
CAPN1-220ENST00000530567 KIF3BO15066 747 aa32.32■■■□□ 2.76
CAPN1-220ENST00000530567 ANKRD50Q9ULJ7 1429 aa32.31■■■□□ 2.76
CAPN1-220ENST00000530567 MROH1Q8NDA8 1641 aa32.29■■■□□ 2.76
CAPN1-220ENST00000530567 FER1L4A9Z1Z3 1794 aa32.28■■■□□ 2.76
CAPN1-220ENST00000530567 GCC2Q8IWJ2 1684 aa32.28■■■□□ 2.76
CAPN1-220ENST00000530567 NAIPQ13075 1403 aa32.27■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms