RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 PLCH2O75038 1416 aa21.23■□□□□ 0.99
CD44-224ENST00000526669 MYOM3Q5VTT5 1437 aa21.21■□□□□ 0.99
CD44-224ENST00000526669 ARAP3Q8WWN8 1544 aa21.21■□□□□ 0.99
CD44-224ENST00000526669 SAMD9LQ8IVG5 1584 aa21.21■□□□□ 0.99
CD44-224ENST00000526669 FANCAO15360 1455 aa21.2■□□□□ 0.98
CD44-224ENST00000526669 TEX14Q8IWB6 1497 aa21.2■□□□□ 0.98
CD44-224ENST00000526669 PTPN23Q9H3S7 1636 aa21.19■□□□□ 0.98
CD44-224ENST00000526669 ZNF777Q9ULD5 760 aaPredicted RBP21.17■□□□□ 0.98
CD44-224ENST00000526669 CFDP1Q9UEE9 299 aaPredicted RBP21.16■□□□□ 0.98
CD44-224ENST00000526669 CAMSAP2Q08AD1 1489 aa21.14■□□□□ 0.98
CD44-224ENST00000526669 FGD6Q6ZV73 1430 aa21.14■□□□□ 0.98
CD44-224ENST00000526669 ABCC1P33527 1531 aa21.14■□□□□ 0.97
CD44-224ENST00000526669 NEO1Q92859 1461 aa21.13■□□□□ 0.97
CD44-224ENST00000526669 AKNAQ7Z591 1439 aa21.13■□□□□ 0.97
CD44-224ENST00000526669 EFCAB2Q5VUJ9 269 aa21.13■□□□□ 0.97
CD44-224ENST00000526669 SYCP2Q9BX26 1530 aa21.13■□□□□ 0.97
CD44-224ENST00000526669 ZNF644Q9H582 1327 aaPredicted RBP21.12■□□□□ 0.97
CD44-224ENST00000526669 ADGRL1O94910 1474 aa21.12■□□□□ 0.97
CD44-224ENST00000526669 MIA2Q96PC5 1412 aa21.11■□□□□ 0.97
CD44-224ENST00000526669 RICTORQ6R327 1708 aa21.1■□□□□ 0.97
CD44-224ENST00000526669 KDM6BO15054 1643 aa21.09■□□□□ 0.97
CD44-224ENST00000526669 ARHGEF12Q9NZN5 1544 aa21.08■□□□□ 0.96
CD44-224ENST00000526669 TCOF1Q13428 1488 aaKnown RBP21.07■□□□□ 0.96
CD44-224ENST00000526669 CROCC2H7BZ55 1655 aa21.06■□□□□ 0.96
CD44-224ENST00000526669 SCAPERQ9BY12 1400 aa21.05■□□□□ 0.96
CD44-224ENST00000526669 FAM50AQ14320 339 aaKnown RBP21.05■□□□□ 0.96
CD44-224ENST00000526669 FRMPD1Q5SYB0 1578 aa21.05■□□□□ 0.96
CD44-224ENST00000526669 PLEKHH2Q8IVE3 1493 aa21.04■□□□□ 0.96
CD44-224ENST00000526669 RRBP1Q9P2E9 1410 aaKnown RBP21.04■□□□□ 0.96
CD44-224ENST00000526669 COL17A1Q9UMD9 1497 aaPredicted RBP21.03■□□□□ 0.96
CD44-224ENST00000526669 HNRNPMP52272 730 aaKnown RBP eCLIP21.03■□□□□ 0.96
CD44-224ENST00000526669 DNMT1P26358 1616 aaKnown RBP21.03■□□□□ 0.96
CD44-224ENST00000526669 ARHGEF5Q12774 1597 aa21.02■□□□□ 0.95
CD44-224ENST00000526669 DENND4BO75064 1496 aaPredicted RBP21.01■□□□□ 0.95
CD44-224ENST00000526669 TRAPPC8Q9Y2L5 1435 aa21.01■□□□□ 0.95
CD44-224ENST00000526669 POGZQ7Z3K3 1410 aa20.99■□□□□ 0.95
CD44-224ENST00000526669 MBD5Q9P267 1494 aa20.99■□□□□ 0.95
CD44-224ENST00000526669 KIAA1107Q9UPP5 1409 aa20.98■□□□□ 0.95
CD44-224ENST00000526669 RAPGEF3O95398 923 aa20.98■□□□□ 0.95
CD44-224ENST00000526669 CCDC141Q6ZP82 1450 aa20.97■□□□□ 0.95
CD44-224ENST00000526669 ADGBQ8N7X0 1667 aa20.96■□□□□ 0.95
CD44-224ENST00000526669 KDM5CP41229 1560 aa20.96■□□□□ 0.95
CD44-224ENST00000526669 ZNF518AQ6AHZ1 1483 aa20.95■□□□□ 0.94
CD44-224ENST00000526669 KIDINS220Q9ULH0 1771 aa20.95■□□□□ 0.94
CD44-224ENST00000526669 HECW2Q9P2P5 1572 aa20.95■□□□□ 0.94
CD44-224ENST00000526669 ITGAEP38570 1179 aa20.94■□□□□ 0.94
CD44-224ENST00000526669 AFAP1Q8N556 730 aa20.94■□□□□ 0.94
CD44-224ENST00000526669 DAPK1P53355 1430 aa20.94■□□□□ 0.94
CD44-224ENST00000526669 ZMYM4Q5VZL5 1548 aa20.93■□□□□ 0.94
CD44-224ENST00000526669 INO80Q9ULG1 1556 aaPredicted RBP20.93■□□□□ 0.94
CD44-224ENST00000526669 ABCC5O15440 1437 aa20.92■□□□□ 0.94
CD44-224ENST00000526669 ABCA6Q8N139 1617 aa20.9■□□□□ 0.94
CD44-224ENST00000526669 MAST1Q9Y2H9 1570 aa20.9■□□□□ 0.94
CD44-224ENST00000526669 ATP7AQ04656 1500 aa20.9■□□□□ 0.94
CD44-224ENST00000526669 ZFYVE16Q7Z3T8 1539 aa20.9■□□□□ 0.94
CD44-224ENST00000526669 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.9■□□□□ 0.94
CD44-224ENST00000526669 MYT1LQ9UL68 1186 aa20.9■□□□□ 0.94
CD44-224ENST00000526669 PTPRKQ15262 1439 aa20.87■□□□□ 0.93
CD44-224ENST00000526669 C9orf84Q5VXU9 1444 aa20.87■□□□□ 0.93
CD44-224ENST00000526669 CHIC2Q9UKJ5 165 aa20.87■□□□□ 0.93
CD44-224ENST00000526669 SHANK2Q9UPX8 1470 aa20.87■□□□□ 0.93
CD44-224ENST00000526669 SPAG9O60271 1321 aaKnown RBP20.86■□□□□ 0.93
CD44-224ENST00000526669 ARHGEF40Q8TER5 1519 aa20.86■□□□□ 0.93
CD44-224ENST00000526669 DIP2CQ9Y2E4 1556 aa20.85■□□□□ 0.93
CD44-224ENST00000526669 YEATS2Q9ULM3 1422 aa20.85■□□□□ 0.93
CD44-224ENST00000526669 TSPY4P0CV99 314 aa20.84■□□□□ 0.93
CD44-224ENST00000526669 TSPY10P0CW01 314 aa20.84■□□□□ 0.93
CD44-224ENST00000526669 RSPH4AQ5TD94 716 aa20.84■□□□□ 0.93
CD44-224ENST00000526669 MLH3Q9UHC1 1453 aa20.83■□□□□ 0.93
CD44-224ENST00000526669 PLXNC1O60486 1568 aa20.83■□□□□ 0.92
CD44-224ENST00000526669 SIGLEC1Q9BZZ2 1709 aa20.81■□□□□ 0.92
CD44-224ENST00000526669 MAGI2Q86UL8 1455 aa20.79■□□□□ 0.92
CD44-224ENST00000526669 GCC2Q8IWJ2 1684 aa20.79■□□□□ 0.92
CD44-224ENST00000526669 RTEL1-TNFRSF6BF6WH68 1400 aa20.78■□□□□ 0.92
CD44-224ENST00000526669 ADGRL2O95490 1459 aa20.78■□□□□ 0.92
CD44-224ENST00000526669 TRIM26Q12899 539 aaPredicted RBP20.77■□□□□ 0.92
CD44-224ENST00000526669 RRP7BPQ9NSQ0 103 aa20.75■□□□□ 0.91
CD44-224ENST00000526669 ANKRD30AQ9BXX3 1397 aa20.74■□□□□ 0.91
CD44-224ENST00000526669 NCOA1Q15788 1441 aa20.73■□□□□ 0.91
CD44-224ENST00000526669 ATP10AO60312 1499 aa20.73■□□□□ 0.91
CD44-224ENST00000526669 KIF15Q9NS87 1388 aa20.72■□□□□ 0.91
CD44-224ENST00000526669 A2MP01023 1474 aa20.71■□□□□ 0.91
CD44-224ENST00000526669 DUOX2Q9NRD8 1548 aa20.71■□□□□ 0.91
CD44-224ENST00000526669 REREQ9P2R6 1566 aa20.7■□□□□ 0.9
CD44-224ENST00000526669 ROCK1Q13464 1354 aa20.7■□□□□ 0.9
CD44-224ENST00000526669 EIF2AK4Q9P2K8 1649 aaKnown RBP20.67■□□□□ 0.9
CD44-224ENST00000526669 BCORL1Q5H9F3 1711 aa20.65■□□□□ 0.9
CD44-224ENST00000526669 NAIPQ13075 1403 aa20.65■□□□□ 0.9
CD44-224ENST00000526669 DHX29Q7Z478 1369 aaKnown RBP20.65■□□□□ 0.9
CD44-224ENST00000526669 HFM1A2PYH4 1435 aa20.63■□□□□ 0.89
CD44-224ENST00000526669 ERBINQ96RT1 1412 aa20.62■□□□□ 0.89
CD44-224ENST00000526669 ANKRD50Q9ULJ7 1429 aa20.62■□□□□ 0.89
CD44-224ENST00000526669 PCGF6Q9BYE7 350 aa20.62■□□□□ 0.89
CD44-224ENST00000526669 CEP152O94986 1710 aa20.61■□□□□ 0.89
CD44-224ENST00000526669 RNF17Q9BXT8 1623 aaKnown RBP20.61■□□□□ 0.89
CD44-224ENST00000526669 ARID4BQ4LE39 1312 aaPredicted RBP20.61■□□□□ 0.89
CD44-224ENST00000526669 AGLP35573 1532 aa20.61■□□□□ 0.89
CD44-224ENST00000526669 DEPDC5O75140 1603 aa20.6■□□□□ 0.89
CD44-224ENST00000526669 FER1L4A9Z1Z3 1794 aa20.59■□□□□ 0.89
CD44-224ENST00000526669 CFAP65Q6ZU64 1925 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms