RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 ARAP3Q8WWN8 1544 aa25.06■■□□□ 1.6
LSM1-204ENST00000522515 CFDP1Q9UEE9 299 aaPredicted RBP25.05■■□□□ 1.6
LSM1-204ENST00000522515 PPRC1Q5VV67 1664 aaKnown RBP25.05■■□□□ 1.6
LSM1-204ENST00000522515 FGD6Q6ZV73 1430 aa25.02■■□□□ 1.6
LSM1-204ENST00000522515 FANCAO15360 1455 aa25.02■■□□□ 1.6
LSM1-204ENST00000522515 EFCAB2Q5VUJ9 269 aa25.01■■□□□ 1.59
LSM1-204ENST00000522515 MIA2Q96PC5 1412 aa25.01■■□□□ 1.59
LSM1-204ENST00000522515 ZNF777Q9ULD5 760 aaPredicted RBP25.01■■□□□ 1.59
LSM1-204ENST00000522515 ZNF644Q9H582 1327 aaPredicted RBP24.98■■□□□ 1.59
LSM1-204ENST00000522515 TEX14Q8IWB6 1497 aa24.97■■□□□ 1.59
LSM1-204ENST00000522515 SAMD9LQ8IVG5 1584 aa24.97■■□□□ 1.59
LSM1-204ENST00000522515 PTPN23Q9H3S7 1636 aa24.96■■□□□ 1.59
LSM1-204ENST00000522515 NEO1Q92859 1461 aa24.95■■□□□ 1.59
LSM1-204ENST00000522515 CFAP74Q9C0B2 1584 aa24.95■■□□□ 1.58
LSM1-204ENST00000522515 RRBP1Q9P2E9 1410 aaKnown RBP24.95■■□□□ 1.58
LSM1-204ENST00000522515 CAMSAP2Q08AD1 1489 aa24.94■■□□□ 1.58
LSM1-204ENST00000522515 AKNAQ7Z591 1439 aa24.94■■□□□ 1.58
LSM1-204ENST00000522515 TCOF1Q13428 1488 aaKnown RBP24.92■■□□□ 1.58
LSM1-204ENST00000522515 FAM50AQ14320 339 aaKnown RBP24.9■■□□□ 1.58
LSM1-204ENST00000522515 ADGRL1O94910 1474 aa24.9■■□□□ 1.58
LSM1-204ENST00000522515 ABCC1P33527 1531 aa24.89■■□□□ 1.58
LSM1-204ENST00000522515 ARHGEF12Q9NZN5 1544 aa24.88■■□□□ 1.57
LSM1-204ENST00000522515 SYCP2Q9BX26 1530 aa24.87■■□□□ 1.57
LSM1-204ENST00000522515 PLEKHH2Q8IVE3 1493 aa24.87■■□□□ 1.57
LSM1-204ENST00000522515 HNRNPMP52272 730 aaKnown RBP eCLIP24.87■■□□□ 1.57
LSM1-204ENST00000522515 SCAPERQ9BY12 1400 aa24.87■■□□□ 1.57
LSM1-204ENST00000522515 KIAA1107Q9UPP5 1409 aa24.86■■□□□ 1.57
LSM1-204ENST00000522515 MBD5Q9P267 1494 aa24.84■■□□□ 1.57
LSM1-204ENST00000522515 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.84■■□□□ 1.57
LSM1-204ENST00000522515 TRAPPC8Q9Y2L5 1435 aa24.81■■□□□ 1.56
LSM1-204ENST00000522515 COL17A1Q9UMD9 1497 aaPredicted RBP24.81■■□□□ 1.56
LSM1-204ENST00000522515 DENND4BO75064 1496 aaPredicted RBP24.79■■□□□ 1.56
LSM1-204ENST00000522515 ARHGEF5Q12774 1597 aa24.79■■□□□ 1.56
LSM1-204ENST00000522515 RAPGEF3O95398 923 aa24.78■■□□□ 1.56
LSM1-204ENST00000522515 DNMT1P26358 1616 aaKnown RBP24.77■■□□□ 1.56
LSM1-204ENST00000522515 POGZQ7Z3K3 1410 aa24.77■■□□□ 1.56
LSM1-204ENST00000522515 AFAP1Q8N556 730 aa24.77■■□□□ 1.56
LSM1-204ENST00000522515 CCDC141Q6ZP82 1450 aa24.76■■□□□ 1.55
LSM1-204ENST00000522515 ABCC5O15440 1437 aa24.76■■□□□ 1.55
LSM1-204ENST00000522515 DAPK1P53355 1430 aa24.76■■□□□ 1.55
LSM1-204ENST00000522515 RSPH4AQ5TD94 716 aa24.76■■□□□ 1.55
LSM1-204ENST00000522515 RICTORQ6R327 1708 aa24.75■■□□□ 1.55
LSM1-204ENST00000522515 ITGAEP38570 1179 aa24.75■■□□□ 1.55
LSM1-204ENST00000522515 ZNF518AQ6AHZ1 1483 aa24.74■■□□□ 1.55
LSM1-204ENST00000522515 FRMPD1Q5SYB0 1578 aa24.74■■□□□ 1.55
LSM1-204ENST00000522515 KDM6BO15054 1643 aa24.73■■□□□ 1.55
LSM1-204ENST00000522515 TRIM26Q12899 539 aaPredicted RBP24.72■■□□□ 1.55
LSM1-204ENST00000522515 PTPRKQ15262 1439 aa24.71■■□□□ 1.55
LSM1-204ENST00000522515 CROCC2H7BZ55 1655 aa24.71■■□□□ 1.55
LSM1-204ENST00000522515 KDM5CP41229 1560 aa24.71■■□□□ 1.55
LSM1-204ENST00000522515 TSPY4P0CV99 314 aa24.68■■□□□ 1.54
LSM1-204ENST00000522515 TSPY10P0CW01 314 aa24.68■■□□□ 1.54
LSM1-204ENST00000522515 SHANK2Q9UPX8 1470 aa24.67■■□□□ 1.54
LSM1-204ENST00000522515 CHIC2Q9UKJ5 165 aa24.67■■□□□ 1.54
LSM1-204ENST00000522515 C9orf84Q5VXU9 1444 aa24.66■■□□□ 1.54
LSM1-204ENST00000522515 SPAG9O60271 1321 aaKnown RBP24.66■■□□□ 1.54
LSM1-204ENST00000522515 ZMYM4Q5VZL5 1548 aa24.64■■□□□ 1.54
LSM1-204ENST00000522515 MAST1Q9Y2H9 1570 aa24.64■■□□□ 1.54
LSM1-204ENST00000522515 INO80Q9ULG1 1556 aaPredicted RBP24.63■■□□□ 1.53
LSM1-204ENST00000522515 MLH3Q9UHC1 1453 aa24.63■■□□□ 1.53
LSM1-204ENST00000522515 ZFYVE16Q7Z3T8 1539 aa24.63■■□□□ 1.53
LSM1-204ENST00000522515 HECW2Q9P2P5 1572 aa24.63■■□□□ 1.53
LSM1-204ENST00000522515 ATP7AQ04656 1500 aa24.62■■□□□ 1.53
LSM1-204ENST00000522515 KIDINS220Q9ULH0 1771 aa24.61■■□□□ 1.53
LSM1-204ENST00000522515 RTEL1-TNFRSF6BF6WH68 1400 aa24.61■■□□□ 1.53
LSM1-204ENST00000522515 MYT1LQ9UL68 1186 aa24.61■■□□□ 1.53
LSM1-204ENST00000522515 ADGBQ8N7X0 1667 aa24.58■■□□□ 1.53
LSM1-204ENST00000522515 ADGRL2O95490 1459 aa24.58■■□□□ 1.52
LSM1-204ENST00000522515 MAGI2Q86UL8 1455 aa24.58■■□□□ 1.52
LSM1-204ENST00000522515 NCOA1Q15788 1441 aa24.57■■□□□ 1.52
LSM1-204ENST00000522515 YEATS2Q9ULM3 1422 aa24.57■■□□□ 1.52
LSM1-204ENST00000522515 ROCK1Q13464 1354 aa24.55■■□□□ 1.52
LSM1-204ENST00000522515 ANKRD30AQ9BXX3 1397 aa24.55■■□□□ 1.52
LSM1-204ENST00000522515 RRP7BPQ9NSQ0 103 aa24.54■■□□□ 1.52
LSM1-204ENST00000522515 ABCA6Q8N139 1617 aa24.54■■□□□ 1.52
LSM1-204ENST00000522515 PLXNC1O60486 1568 aa24.54■■□□□ 1.52
LSM1-204ENST00000522515 DIP2CQ9Y2E4 1556 aa24.52■■□□□ 1.52
LSM1-204ENST00000522515 PCGF6Q9BYE7 350 aa24.51■■□□□ 1.51
LSM1-204ENST00000522515 KIF15Q9NS87 1388 aa24.51■■□□□ 1.51
LSM1-204ENST00000522515 ARHGEF40Q8TER5 1519 aa24.5■■□□□ 1.51
LSM1-204ENST00000522515 HFM1A2PYH4 1435 aa24.47■■□□□ 1.51
LSM1-204ENST00000522515 NAIPQ13075 1403 aa24.47■■□□□ 1.51
LSM1-204ENST00000522515 ATP10AO60312 1499 aa24.46■■□□□ 1.51
LSM1-204ENST00000522515 DUOX2Q9NRD8 1548 aa24.45■■□□□ 1.51
LSM1-204ENST00000522515 A2MP01023 1474 aa24.44■■□□□ 1.5
LSM1-204ENST00000522515 DHX29Q7Z478 1369 aaKnown RBP24.44■■□□□ 1.5
LSM1-204ENST00000522515 GCC2Q8IWJ2 1684 aa24.44■■□□□ 1.5
LSM1-204ENST00000522515 ANKRD50Q9ULJ7 1429 aa24.41■■□□□ 1.5
LSM1-204ENST00000522515 REREQ9P2R6 1566 aa24.4■■□□□ 1.5
LSM1-204ENST00000522515 ERBINQ96RT1 1412 aa24.39■■□□□ 1.49
LSM1-204ENST00000522515 SETD5Q9C0A6 1442 aa24.39■■□□□ 1.49
LSM1-204ENST00000522515 SIGLEC1Q9BZZ2 1709 aa24.38■■□□□ 1.49
LSM1-204ENST00000522515 RAB3GAP2Q9H2M9 1393 aa24.34■■□□□ 1.49
LSM1-204ENST00000522515 EIF2AK4Q9P2K8 1649 aaKnown RBP24.33■■□□□ 1.49
LSM1-204ENST00000522515 KIF3BO15066 747 aa24.33■■□□□ 1.48
LSM1-204ENST00000522515 AGLP35573 1532 aa24.32■■□□□ 1.48
LSM1-204ENST00000522515 BCORL1Q5H9F3 1711 aa24.3■■□□□ 1.48
LSM1-204ENST00000522515 ARID4BQ4LE39 1312 aaPredicted RBP24.29■■□□□ 1.48
LSM1-204ENST00000522515 DEPDC5O75140 1603 aa24.25■■□□□ 1.47
LSM1-204ENST00000522515 RNF17Q9BXT8 1623 aaKnown RBP24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms