RNA–Protein interactions for RNA: ENST00000519321.5

SKP1-206, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 692 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-206ENST00000519321 COL17A1Q9UMD9 1497 aaPredicted RBP35.41■■■■□ 3.26
SKP1-206ENST00000519321 CCNB3Q8WWL7 1395 aa35.38■■■■□ 3.26
SKP1-206ENST00000519321 CDC42BPAQ5VT25 1732 aa35.37■■■■□ 3.25
SKP1-206ENST00000519321 CDC42BPBQ9Y5S2 1711 aa35.37■■■■□ 3.25
SKP1-206ENST00000519321 KANK4Q5T7N3 995 aaPredicted RBP35.35■■■■□ 3.25
SKP1-206ENST00000519321 GPATCH8Q9UKJ3 1502 aaKnown RBP35.35■■■■□ 3.25
SKP1-206ENST00000519321 NCOA2Q15596 1464 aa35.34■■■■□ 3.25
SKP1-206ENST00000519321 ADGRL1O94910 1474 aa35.31■■■■□ 3.24
SKP1-206ENST00000519321 ITSN2Q9NZM3 1697 aa35.3■■■■□ 3.24
SKP1-206ENST00000519321 DENND4BO75064 1496 aaPredicted RBP35.29■■■■□ 3.24
SKP1-206ENST00000519321 CFDP1Q9UEE9 299 aaPredicted RBP35.27■■■■□ 3.24
SKP1-206ENST00000519321 SCAPERQ9BY12 1400 aa35.25■■■■□ 3.23
SKP1-206ENST00000519321 RAPGEF3O95398 923 aa35.22■■■■□ 3.23
SKP1-206ENST00000519321 ZNF777Q9ULD5 760 aaPredicted RBP35.19■■■■□ 3.22
SKP1-206ENST00000519321 RICTORQ6R327 1708 aa35.18■■■■□ 3.22
SKP1-206ENST00000519321 FRMPD1Q5SYB0 1578 aa35.17■■■■□ 3.22
SKP1-206ENST00000519321 ABCC1P33527 1531 aa35.16■■■■□ 3.22
SKP1-206ENST00000519321 PLEKHH2Q8IVE3 1493 aa35.16■■■■□ 3.22
SKP1-206ENST00000519321 POGZQ7Z3K3 1410 aa35.16■■■■□ 3.22
SKP1-206ENST00000519321 SAMD9LQ8IVG5 1584 aa35.15■■■■□ 3.22
SKP1-206ENST00000519321 ZNF518AQ6AHZ1 1483 aa35.12■■■■□ 3.21
SKP1-206ENST00000519321 KIAA1107Q9UPP5 1409 aa35.11■■■■□ 3.21
SKP1-206ENST00000519321 ZMYM4Q5VZL5 1548 aa35.1■■■■□ 3.21
SKP1-206ENST00000519321 MYOM3Q5VTT5 1437 aa35.09■■■■□ 3.21
SKP1-206ENST00000519321 MIA2Q96PC5 1412 aa35.06■■■■□ 3.2
SKP1-206ENST00000519321 ARHGEF12Q9NZN5 1544 aa35.06■■■■□ 3.2
SKP1-206ENST00000519321 MAGI2Q86UL8 1455 aa35.06■■■■□ 3.2
SKP1-206ENST00000519321 SYCP2Q9BX26 1530 aa35.04■■■■□ 3.2
SKP1-206ENST00000519321 KDM5CP41229 1560 aa35.03■■■■□ 3.2
SKP1-206ENST00000519321 AFAP1Q8N556 730 aa35.02■■■■□ 3.2
SKP1-206ENST00000519321 TRAPPC8Q9Y2L5 1435 aa35.01■■■■□ 3.2
SKP1-206ENST00000519321 HNRNPMP52272 730 aaKnown RBP eCLIP35■■■■□ 3.191e-11■■■■□ 25
SKP1-206ENST00000519321 ZNF644Q9H582 1327 aaPredicted RBP35■■■■□ 3.19
SKP1-206ENST00000519321 CAMSAP2Q08AD1 1489 aa34.99■■■■□ 3.19
SKP1-206ENST00000519321 ZFYVE16Q7Z3T8 1539 aa34.96■■■■□ 3.19
SKP1-206ENST00000519321 ARHGEF40Q8TER5 1519 aa34.96■■■■□ 3.19
SKP1-206ENST00000519321 RSPH4AQ5TD94 716 aa34.95■■■■□ 3.19
SKP1-206ENST00000519321 MLH3Q9UHC1 1453 aa34.94■■■■□ 3.18
SKP1-206ENST00000519321 HECW2Q9P2P5 1572 aa34.94■■■■□ 3.18
SKP1-206ENST00000519321 MBD5Q9P267 1494 aa34.93■■■■□ 3.18
SKP1-206ENST00000519321 MYT1LQ9UL68 1186 aa34.92■■■■□ 3.18
SKP1-206ENST00000519321 FGD6Q6ZV73 1430 aa34.91■■■■□ 3.18
SKP1-206ENST00000519321 YEATS2Q9ULM3 1422 aa34.89■■■■□ 3.18
SKP1-206ENST00000519321 SPAG9O60271 1321 aaKnown RBP34.87■■■■□ 3.17
SKP1-206ENST00000519321 CCDC141Q6ZP82 1450 aa34.87■■■■□ 3.17
SKP1-206ENST00000519321 PTPN23Q9H3S7 1636 aa34.87■■■■□ 3.17
SKP1-206ENST00000519321 ARHGEF5Q12774 1597 aa34.87■■■■□ 3.17
SKP1-206ENST00000519321 PPARGC1BQ86YN6 1023 aaKnown RBP34.84■■■■□ 3.17
SKP1-206ENST00000519321 ATP10AO60312 1499 aa34.84■■■■□ 3.17
SKP1-206ENST00000519321 TCOF1Q13428 1488 aaKnown RBP34.83■■■■□ 3.17
SKP1-206ENST00000519321 KIDINS220Q9ULH0 1771 aa34.81■■■■□ 3.16
SKP1-206ENST00000519321 ATP7AQ04656 1500 aa34.79■■■■□ 3.16
SKP1-206ENST00000519321 RTEL1-TNFRSF6BF6WH68 1400 aa34.79■■■■□ 3.16
SKP1-206ENST00000519321 C9orf84Q5VXU9 1444 aa34.79■■■■□ 3.16
SKP1-206ENST00000519321 INO80Q9ULG1 1556 aaPredicted RBP34.79■■■■□ 3.16
SKP1-206ENST00000519321 TSPY4P0CV99 314 aa34.78■■■■□ 3.16
SKP1-206ENST00000519321 TSPY10P0CW01 314 aa34.78■■■■□ 3.16
SKP1-206ENST00000519321 DIP2CQ9Y2E4 1556 aa34.78■■■■□ 3.16
SKP1-206ENST00000519321 ABCA6Q8N139 1617 aa34.75■■■■□ 3.15
SKP1-206ENST00000519321 REREQ9P2R6 1566 aa34.73■■■■□ 3.15
SKP1-206ENST00000519321 ARID4BQ4LE39 1312 aaPredicted RBP34.73■■■■□ 3.15
SKP1-206ENST00000519321 FAM50AQ14320 339 aaKnown RBP34.68■■■■□ 3.14
SKP1-206ENST00000519321 MAST1Q9Y2H9 1570 aa34.68■■■■□ 3.14
SKP1-206ENST00000519321 DNMT1P26358 1616 aaKnown RBP34.66■■■■□ 3.14
SKP1-206ENST00000519321 ABCC5O15440 1437 aa34.64■■■■□ 3.14
SKP1-206ENST00000519321 DAPK1P53355 1430 aa34.64■■■■□ 3.14
SKP1-206ENST00000519321 SHANK2Q9UPX8 1470 aa34.64■■■■□ 3.14
SKP1-206ENST00000519321 ADGBQ8N7X0 1667 aa34.63■■■■□ 3.13
SKP1-206ENST00000519321 CROCC2H7BZ55 1655 aa34.61■■■■□ 3.13
SKP1-206ENST00000519321 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.61■■■■□ 3.131e-8■■■□□ 18.6
SKP1-206ENST00000519321 AGLP35573 1532 aa34.6■■■■□ 3.13
SKP1-206ENST00000519321 A2MP01023 1474 aa34.6■■■■□ 3.13
SKP1-206ENST00000519321 KDM4FA0A1W2PPD8 638 aa34.6■■■■□ 3.13
SKP1-206ENST00000519321 BCORL1Q5H9F3 1711 aa34.6■■■■□ 3.13
SKP1-206ENST00000519321 SIGLEC1Q9BZZ2 1709 aa34.6■■■■□ 3.13
SKP1-206ENST00000519321 RRBP1Q9P2E9 1410 aaKnown RBP34.55■■■■□ 3.12
SKP1-206ENST00000519321 PLXNC1O60486 1568 aa34.55■■■■□ 3.12
SKP1-206ENST00000519321 DHX29Q7Z478 1369 aaKnown RBP34.53■■■■□ 3.12
SKP1-206ENST00000519321 ADAMTSL3P82987 1691 aa34.53■■■■□ 3.12
SKP1-206ENST00000519321 MLECQ14165 292 aa34.49■■■■□ 3.11
SKP1-206ENST00000519321 ANKRD30AQ9BXX3 1397 aa34.47■■■■□ 3.11
SKP1-206ENST00000519321 CHIC2Q9UKJ5 165 aa34.44■■■■□ 3.1
SKP1-206ENST00000519321 AEBP2Q6ZN18 517 aaPredicted RBP34.43■■■■□ 3.1
SKP1-206ENST00000519321 ADGRL2O95490 1459 aa34.43■■■■□ 3.1
SKP1-206ENST00000519321 DUOX2Q9NRD8 1548 aa34.43■■■■□ 3.1
SKP1-206ENST00000519321 MADDQ8WXG6 1647 aa34.42■■■■□ 3.1
SKP1-206ENST00000519321 KIF15Q9NS87 1388 aa34.42■■■■□ 3.1
SKP1-206ENST00000519321 NCOA1Q15788 1441 aa34.4■■■■□ 3.1
SKP1-206ENST00000519321 RRP7BPQ9NSQ0 103 aa34.39■■■■□ 3.1
SKP1-206ENST00000519321 FER1L4A9Z1Z3 1794 aa34.38■■■■□ 3.09
SKP1-206ENST00000519321 KIF3BO15066 747 aa34.36■■■■□ 3.09
SKP1-206ENST00000519321 ESF1Q9H501 851 aaKnown RBP34.36■■■■□ 3.09
SKP1-206ENST00000519321 EIF2AK4Q9P2K8 1649 aaKnown RBP34.36■■■■□ 3.09
SKP1-206ENST00000519321 PPP6R1Q9UPN7 881 aa34.35■■■■□ 3.09
SKP1-206ENST00000519321 PTPRKQ15262 1439 aa34.35■■■■□ 3.09
SKP1-206ENST00000519321 ITGAEP38570 1179 aa34.34■■■■□ 3.09
SKP1-206ENST00000519321 ERBINQ96RT1 1412 aa34.34■■■■□ 3.09
SKP1-206ENST00000519321 ROCK1Q13464 1354 aa34.34■■■■□ 3.09
SKP1-206ENST00000519321 RIMS1Q86UR5 1692 aaKnown RBP34.33■■■■□ 3.09
SKP1-206ENST00000519321 GGT6Q6P531 493 aa34.32■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms