RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 RAPGEF2Q9Y4G8 1499 aa16.93■□□□□ 0.3
CLCN3-208ENST00000512813 HSPA1LP34931 641 aa16.91■□□□□ 0.3
CLCN3-208ENST00000512813 PHF23Q9BUL5 403 aaPredicted RBP16.91■□□□□ 0.3
CLCN3-208ENST00000512813 CTTNBP2Q8WZ74 1663 aa16.9■□□□□ 0.3
CLCN3-208ENST00000512813 HECW1Q76N89 1606 aa16.89■□□□□ 0.29
CLCN3-208ENST00000512813 ARID3CA6NKF2 412 aa16.87■□□□□ 0.29
CLCN3-208ENST00000512813 ZNF335Q9H4Z2 1342 aaPredicted RBP16.86■□□□□ 0.29
CLCN3-208ENST00000512813 C9orf84Q5VXU9 1444 aa16.86■□□□□ 0.29
CLCN3-208ENST00000512813 ATP10AO60312 1499 aa16.84■□□□□ 0.29
CLCN3-208ENST00000512813 C3P01024 1663 aa16.83■□□□□ 0.28
CLCN3-208ENST00000512813 CAMSAP1Q5T5Y3 1602 aa16.8■□□□□ 0.28
CLCN3-208ENST00000512813 TRAPPC8Q9Y2L5 1435 aa16.79■□□□□ 0.28
CLCN3-208ENST00000512813 SCAF1Q9H7N4 1312 aaKnown RBP16.76■□□□□ 0.27
CLCN3-208ENST00000512813 RAPGEF6Q8TEU7 1601 aa16.74■□□□□ 0.27
CLCN3-208ENST00000512813 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.74■□□□□ 0.27
CLCN3-208ENST00000512813 PIP4K2BP78356 416 aa16.73■□□□□ 0.27
CLCN3-208ENST00000512813 FAM9AQ8IZU1 332 aaPredicted RBP16.73■□□□□ 0.27
CLCN3-208ENST00000512813 SCAPERQ9BY12 1400 aa16.71■□□□□ 0.27
CLCN3-208ENST00000512813 TOM1O60784 492 aa16.71■□□□□ 0.27
CLCN3-208ENST00000512813 PLA2R1Q13018 1463 aa16.7■□□□□ 0.26
CLCN3-208ENST00000512813 SUPT5HO00267 1087 aaKnown RBP16.7■□□□□ 0.26
CLCN3-208ENST00000512813 REREQ9P2R6 1566 aa16.69■□□□□ 0.26
CLCN3-208ENST00000512813 NCKAP5LQ9HCH0 1330 aa16.69■□□□□ 0.26
CLCN3-208ENST00000512813 NUP153P49790 1475 aaKnown RBP16.68■□□□□ 0.26
CLCN3-208ENST00000512813 TCOF1Q13428 1488 aaKnown RBP16.68■□□□□ 0.26
CLCN3-208ENST00000512813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.68■□□□□ 0.26
CLCN3-208ENST00000512813 HNRNPUL2Q1KMD3 747 aaKnown RBP16.68■□□□□ 0.26
CLCN3-208ENST00000512813 RGS17Q9UGC6 210 aaPredicted RBP16.68■□□□□ 0.26
CLCN3-208ENST00000512813 CPS1P31327 1500 aa16.66■□□□□ 0.26
CLCN3-208ENST00000512813 AGLP35573 1532 aa16.66■□□□□ 0.26
CLCN3-208ENST00000512813 PKD2Q13563 968 aa16.66■□□□□ 0.26
CLCN3-208ENST00000512813 NPATQ14207 1427 aa16.66■□□□□ 0.26
CLCN3-208ENST00000512813 ZNF142P52746 1687 aaPredicted RBP16.65■□□□□ 0.26
CLCN3-208ENST00000512813 ALKQ9UM73 1620 aa16.65■□□□□ 0.26
CLCN3-208ENST00000512813 DIP2CQ9Y2E4 1556 aa16.64■□□□□ 0.25
CLCN3-208ENST00000512813 CNTLNQ9NXG0 1405 aa16.63■□□□□ 0.25
CLCN3-208ENST00000512813 KDM5CP41229 1560 aa16.63■□□□□ 0.25
CLCN3-208ENST00000512813 PTPRKQ15262 1439 aa16.62■□□□□ 0.25
CLCN3-208ENST00000512813 ZNF518AQ6AHZ1 1483 aa16.61■□□□□ 0.25
CLCN3-208ENST00000512813 SAMD9Q5K651 1589 aa16.61■□□□□ 0.25
CLCN3-208ENST00000512813 MROH2AA6NES4 1674 aa16.6■□□□□ 0.25
CLCN3-208ENST00000512813 ESF1Q9H501 851 aaKnown RBP16.6■□□□□ 0.25
CLCN3-208ENST00000512813 PPP6R1Q9UPN7 881 aa16.6■□□□□ 0.25
CLCN3-208ENST00000512813 PLCH2O75038 1416 aa16.6■□□□□ 0.25
CLCN3-208ENST00000512813 MYO3AQ8NEV4 1616 aa16.59■□□□□ 0.25
CLCN3-208ENST00000512813 PLEKHD1A6NEE1 506 aa16.59■□□□□ 0.25
CLCN3-208ENST00000512813 P3H3Q8IVL6 736 aa16.59■□□□□ 0.25
CLCN3-208ENST00000512813 SUPT6HQ7KZ85 1726 aaKnown RBP16.59■□□□□ 0.25
CLCN3-208ENST00000512813 CEP170BQ9Y4F5 1589 aaPredicted RBP16.58■□□□□ 0.24
CLCN3-208ENST00000512813 ABCA6Q8N139 1617 aa16.57■□□□□ 0.24
CLCN3-208ENST00000512813 SETD1AO15047 1707 aaKnown RBP16.56■□□□□ 0.24
CLCN3-208ENST00000512813 SHANK2Q9UPX8 1470 aa16.55■□□□□ 0.24
CLCN3-208ENST00000512813 SRCAPQ6ZRS2 3230 aa16.53■□□□□ 0.24
CLCN3-208ENST00000512813 POTEAQ6S8J7 498 aa16.53■□□□□ 0.24
CLCN3-208ENST00000512813 MYO5CQ9NQX4 1742 aa16.5■□□□□ 0.23
CLCN3-208ENST00000512813 PRXQ9BXM0 1461 aa16.5■□□□□ 0.23
CLCN3-208ENST00000512813 MLH3Q9UHC1 1453 aa16.5■□□□□ 0.23
CLCN3-208ENST00000512813 POLR1AO95602 1720 aaPredicted RBP16.48■□□□□ 0.23
CLCN3-208ENST00000512813 NEURL4Q96JN8 1562 aa16.48■□□□□ 0.23
CLCN3-208ENST00000512813 EFCAB2Q5VUJ9 269 aa16.48■□□□□ 0.23
CLCN3-208ENST00000512813 VWDEQ8N2E2 1590 aa16.47■□□□□ 0.23
CLCN3-208ENST00000512813 AFAP1Q8N556 730 aa16.47■□□□□ 0.23
CLCN3-208ENST00000512813 ZMYM3Q14202 1370 aa16.47■□□□□ 0.23
CLCN3-208ENST00000512813 RNF17Q9BXT8 1623 aaKnown RBP16.46■□□□□ 0.23
CLCN3-208ENST00000512813 SENP3Q9H4L4 574 aaPredicted RBP16.45■□□□□ 0.22
CLCN3-208ENST00000512813 MYT1LQ9UL68 1186 aa16.43■□□□□ 0.22
CLCN3-208ENST00000512813 DNMT1P26358 1616 aaKnown RBP16.42■□□□□ 0.22
CLCN3-208ENST00000512813 A2ML1A8K2U0 1454 aa16.42■□□□□ 0.22
CLCN3-208ENST00000512813 UPF1Q92900 1129 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLCN3-208ENST00000512813 CLTCQ00610 1675 aaKnown RBP16.4■□□□□ 0.22
CLCN3-208ENST00000512813 ARHGAP5Q13017 1502 aa16.39■□□□□ 0.21
CLCN3-208ENST00000512813 CDK13Q14004 1512 aaKnown RBP16.39■□□□□ 0.21
CLCN3-208ENST00000512813 SYNMO15061 1565 aa16.38■□□□□ 0.21
CLCN3-208ENST00000512813 KIDINS220Q9ULH0 1771 aa16.38■□□□□ 0.21
CLCN3-208ENST00000512813 LRRC7Q96NW7 1537 aa16.36■□□□□ 0.21
CLCN3-208ENST00000512813 ABCC1P33527 1531 aa16.33■□□□□ 0.2
CLCN3-208ENST00000512813 KIF14Q15058 1648 aa16.33■□□□□ 0.2
CLCN3-208ENST00000512813 STRCP1A6NGW2 1772 aa16.33■□□□□ 0.2
CLCN3-208ENST00000512813 ITSN2Q9NZM3 1697 aa16.32■□□□□ 0.2
CLCN3-208ENST00000512813 MED14O60244 1454 aa16.31■□□□□ 0.2
CLCN3-208ENST00000512813 DEPDC5O75140 1603 aa16.3■□□□□ 0.2
CLCN3-208ENST00000512813 NPHP4O75161 1426 aaPredicted RBP16.28■□□□□ 0.2
CLCN3-208ENST00000512813 PLXNC1O60486 1568 aa16.27■□□□□ 0.2
CLCN3-208ENST00000512813 CDC42BPBQ9Y5S2 1711 aa16.27■□□□□ 0.19
CLCN3-208ENST00000512813 IQGAP1P46940 1657 aa16.27■□□□□ 0.19
CLCN3-208ENST00000512813 FAM135BQ49AJ0 1406 aa16.26■□□□□ 0.19
CLCN3-208ENST00000512813 ANKLE2Q86XL3 938 aa16.25■□□□□ 0.19
CLCN3-208ENST00000512813 PREX2Q70Z35 1606 aa16.23■□□□□ 0.19
CLCN3-208ENST00000512813 SAMD9LQ8IVG5 1584 aa16.22■□□□□ 0.19
CLCN3-208ENST00000512813 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLCN3-208ENST00000512813 TROQ12816 1431 aaPredicted RBP16.2■□□□□ 0.18
CLCN3-208ENST00000512813 TNRQ92752 1358 aa16.19■□□□□ 0.18
CLCN3-208ENST00000512813 XIRP1Q702N8 1843 aaKnown RBP16.19■□□□□ 0.18
CLCN3-208ENST00000512813 CDK11AQ9UQ88 783 aaPredicted RBP16.17■□□□□ 0.18
CLCN3-208ENST00000512813 CLIP1P30622 1438 aa16.17■□□□□ 0.18
CLCN3-208ENST00000512813 ROBO1Q9Y6N7 1651 aa16.17■□□□□ 0.18
CLCN3-208ENST00000512813 A2MP01023 1474 aa16.16■□□□□ 0.18
CLCN3-208ENST00000512813 TRIM52Q96A61 297 aa16.16■□□□□ 0.18
CLCN3-208ENST00000512813 UGGT1Q9NYU2 1555 aa16.16■□□□□ 0.18
CLCN3-208ENST00000512813 ATP7AQ04656 1500 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms