RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CDC42BPAQ5VT25 1732 aa18.43■□□□□ 0.54
CUX1-210ENST00000497815 PREX2Q70Z35 1606 aa18.43■□□□□ 0.54
CUX1-210ENST00000497815 FANCAO15360 1455 aa18.43■□□□□ 0.54
CUX1-210ENST00000497815 ZNF777Q9ULD5 760 aaPredicted RBP18.42■□□□□ 0.54
CUX1-210ENST00000497815 EFCAB2Q5VUJ9 269 aa18.41■□□□□ 0.54
CUX1-210ENST00000497815 CFDP1Q9UEE9 299 aaPredicted RBP18.41■□□□□ 0.54
CUX1-210ENST00000497815 PHLDB1Q86UU1 1377 aa18.41■□□□□ 0.54
CUX1-210ENST00000497815 CDC42BPBQ9Y5S2 1711 aa18.4■□□□□ 0.54
CUX1-210ENST00000497815 ITSN2Q9NZM3 1697 aa18.4■□□□□ 0.54
CUX1-210ENST00000497815 ARAP3Q8WWN8 1544 aa18.39■□□□□ 0.53
CUX1-210ENST00000497815 MYOM3Q5VTT5 1437 aa18.38■□□□□ 0.53
CUX1-210ENST00000497815 NEO1Q92859 1461 aa18.38■□□□□ 0.53
CUX1-210ENST00000497815 CFAP74Q9C0B2 1584 aa18.38■□□□□ 0.53
CUX1-210ENST00000497815 AKNAQ7Z591 1439 aa18.37■□□□□ 0.53
CUX1-210ENST00000497815 ZNF644Q9H582 1327 aaPredicted RBP18.35■□□□□ 0.53
CUX1-210ENST00000497815 ADGRL1O94910 1474 aa18.34■□□□□ 0.53
CUX1-210ENST00000497815 SAMD9LQ8IVG5 1584 aa18.34■□□□□ 0.53
CUX1-210ENST00000497815 SCAPERQ9BY12 1400 aa18.32■□□□□ 0.52
CUX1-210ENST00000497815 KDM6BO15054 1643 aa18.31■□□□□ 0.52
CUX1-210ENST00000497815 COL17A1Q9UMD9 1497 aaPredicted RBP18.31■□□□□ 0.52
CUX1-210ENST00000497815 FGD6Q6ZV73 1430 aa18.31■□□□□ 0.52
CUX1-210ENST00000497815 MIA2Q96PC5 1412 aa18.31■□□□□ 0.52
CUX1-210ENST00000497815 CAMSAP2Q08AD1 1489 aa18.3■□□□□ 0.52
CUX1-210ENST00000497815 ABCC1P33527 1531 aa18.29■□□□□ 0.52
CUX1-210ENST00000497815 RAPGEF3O95398 923 aa18.29■□□□□ 0.52
CUX1-210ENST00000497815 HNRNPMP52272 730 aaKnown RBP eCLIP18.29■□□□□ 0.529e-7■■■□□ 19.2
CUX1-210ENST00000497815 SYCP2Q9BX26 1530 aa18.28■□□□□ 0.52
CUX1-210ENST00000497815 DENND4BO75064 1496 aaPredicted RBP18.28■□□□□ 0.52
CUX1-210ENST00000497815 ARHGEF12Q9NZN5 1544 aa18.28■□□□□ 0.52
CUX1-210ENST00000497815 PTPN23Q9H3S7 1636 aa18.27■□□□□ 0.52
CUX1-210ENST00000497815 FAM50AQ14320 339 aaKnown RBP18.27■□□□□ 0.52
CUX1-210ENST00000497815 PLEKHH2Q8IVE3 1493 aa18.26■□□□□ 0.51
CUX1-210ENST00000497815 POGZQ7Z3K3 1410 aa18.24■□□□□ 0.51
CUX1-210ENST00000497815 TRAPPC8Q9Y2L5 1435 aa18.24■□□□□ 0.51
CUX1-210ENST00000497815 AFAP1Q8N556 730 aa18.24■□□□□ 0.51
CUX1-210ENST00000497815 KIAA1107Q9UPP5 1409 aa18.23■□□□□ 0.51
CUX1-210ENST00000497815 TCOF1Q13428 1488 aaKnown RBP18.23■□□□□ 0.51
CUX1-210ENST00000497815 FRMPD1Q5SYB0 1578 aa18.22■□□□□ 0.51
CUX1-210ENST00000497815 ZNF518AQ6AHZ1 1483 aa18.21■□□□□ 0.51
CUX1-210ENST00000497815 MBD5Q9P267 1494 aa18.21■□□□□ 0.51
CUX1-210ENST00000497815 RICTORQ6R327 1708 aa18.21■□□□□ 0.51
CUX1-210ENST00000497815 MYT1LQ9UL68 1186 aa18.21■□□□□ 0.51
CUX1-210ENST00000497815 RRBP1Q9P2E9 1410 aaKnown RBP18.18■□□□□ 0.5
CUX1-210ENST00000497815 CCDC141Q6ZP82 1450 aa18.18■□□□□ 0.5
CUX1-210ENST00000497815 ITGAEP38570 1179 aa18.17■□□□□ 0.5
CUX1-210ENST00000497815 ARHGEF5Q12774 1597 aa18.17■□□□□ 0.5
CUX1-210ENST00000497815 SPAG9O60271 1321 aaKnown RBP18.16■□□□□ 0.5
CUX1-210ENST00000497815 KDM5CP41229 1560 aa18.16■□□□□ 0.5
CUX1-210ENST00000497815 RSPH4AQ5TD94 716 aa18.15■□□□□ 0.5
CUX1-210ENST00000497815 DAPK1P53355 1430 aa18.15■□□□□ 0.5
CUX1-210ENST00000497815 ZMYM4Q5VZL5 1548 aa18.14■□□□□ 0.49
CUX1-210ENST00000497815 TSPY4P0CV99 314 aa18.14■□□□□ 0.49
CUX1-210ENST00000497815 TSPY10P0CW01 314 aa18.14■□□□□ 0.49
CUX1-210ENST00000497815 ABCC5O15440 1437 aa18.14■□□□□ 0.49
CUX1-210ENST00000497815 HECW2Q9P2P5 1572 aa18.13■□□□□ 0.49
CUX1-210ENST00000497815 DNMT1P26358 1616 aaKnown RBP18.13■□□□□ 0.49
CUX1-210ENST00000497815 YEATS2Q9ULM3 1422 aa18.12■□□□□ 0.49
CUX1-210ENST00000497815 CHIC2Q9UKJ5 165 aa18.11■□□□□ 0.49
CUX1-210ENST00000497815 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.11■□□□□ 0.492e-6■■□□□ 13.4
CUX1-210ENST00000497815 ZFYVE16Q7Z3T8 1539 aa18.11■□□□□ 0.49
CUX1-210ENST00000497815 ATP7AQ04656 1500 aa18.1■□□□□ 0.49
CUX1-210ENST00000497815 MLH3Q9UHC1 1453 aa18.1■□□□□ 0.49
CUX1-210ENST00000497815 C9orf84Q5VXU9 1444 aa18.1■□□□□ 0.49
CUX1-210ENST00000497815 CROCC2H7BZ55 1655 aa18.09■□□□□ 0.49
CUX1-210ENST00000497815 INO80Q9ULG1 1556 aaPredicted RBP18.09■□□□□ 0.49
CUX1-210ENST00000497815 MAGI2Q86UL8 1455 aa18.09■□□□□ 0.49
CUX1-210ENST00000497815 KIDINS220Q9ULH0 1771 aa18.08■□□□□ 0.48
CUX1-210ENST00000497815 PTPRKQ15262 1439 aa18.07■□□□□ 0.48
CUX1-210ENST00000497815 ARHGEF40Q8TER5 1519 aa18.07■□□□□ 0.48
CUX1-210ENST00000497815 SHANK2Q9UPX8 1470 aa18.07■□□□□ 0.48
CUX1-210ENST00000497815 RTEL1-TNFRSF6BF6WH68 1400 aa18.06■□□□□ 0.48
CUX1-210ENST00000497815 ABCA6Q8N139 1617 aa18.06■□□□□ 0.48
CUX1-210ENST00000497815 MAST1Q9Y2H9 1570 aa18.06■□□□□ 0.48
CUX1-210ENST00000497815 DIP2CQ9Y2E4 1556 aa18.05■□□□□ 0.48
CUX1-210ENST00000497815 ATP10AO60312 1499 aa18.03■□□□□ 0.48
CUX1-210ENST00000497815 RRP7BPQ9NSQ0 103 aa18.03■□□□□ 0.48
CUX1-210ENST00000497815 ANKRD30AQ9BXX3 1397 aa18.02■□□□□ 0.47
CUX1-210ENST00000497815 ADGBQ8N7X0 1667 aa18■□□□□ 0.47
CUX1-210ENST00000497815 PLXNC1O60486 1568 aa18■□□□□ 0.47
CUX1-210ENST00000497815 ARID4BQ4LE39 1312 aaPredicted RBP17.99■□□□□ 0.47
CUX1-210ENST00000497815 KIF15Q9NS87 1388 aa17.99■□□□□ 0.47
CUX1-210ENST00000497815 ADGRL2O95490 1459 aa17.99■□□□□ 0.47
CUX1-210ENST00000497815 A2MP01023 1474 aa17.99■□□□□ 0.47
CUX1-210ENST00000497815 NCOA1Q15788 1441 aa17.98■□□□□ 0.47
CUX1-210ENST00000497815 ROCK1Q13464 1354 aa17.96■□□□□ 0.47
CUX1-210ENST00000497815 SIGLEC1Q9BZZ2 1709 aa17.95■□□□□ 0.46
CUX1-210ENST00000497815 DHX29Q7Z478 1369 aaKnown RBP17.95■□□□□ 0.46
CUX1-210ENST00000497815 DUOX2Q9NRD8 1548 aa17.94■□□□□ 0.46
CUX1-210ENST00000497815 TRIM26Q12899 539 aaPredicted RBP17.94■□□□□ 0.46
CUX1-210ENST00000497815 MLECQ14165 292 aa17.94■□□□□ 0.46
CUX1-210ENST00000497815 REREQ9P2R6 1566 aa17.94■□□□□ 0.46
CUX1-210ENST00000497815 KIF3BO15066 747 aa17.91■□□□□ 0.46
CUX1-210ENST00000497815 ERBINQ96RT1 1412 aa17.89■□□□□ 0.46
CUX1-210ENST00000497815 AGLP35573 1532 aa17.89■□□□□ 0.45
CUX1-210ENST00000497815 ANKRD50Q9ULJ7 1429 aa17.89■□□□□ 0.45
CUX1-210ENST00000497815 GGT6Q6P531 493 aa17.88■□□□□ 0.45
CUX1-210ENST00000497815 HFM1A2PYH4 1435 aa17.88■□□□□ 0.45
CUX1-210ENST00000497815 NAIPQ13075 1403 aa17.88■□□□□ 0.45
CUX1-210ENST00000497815 EIF2AK4Q9P2K8 1649 aaKnown RBP17.86■□□□□ 0.45
CUX1-210ENST00000497815 GCC2Q8IWJ2 1684 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms