RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 GPATCH8Q9UKJ3 1502 aaKnown RBP22.91■■□□□ 1.26
ACTB-213ENST00000493945 CDC42BPBQ9Y5S2 1711 aa22.9■■□□□ 1.26
ACTB-213ENST00000493945 PHLDB1Q86UU1 1377 aa22.89■■□□□ 1.26
ACTB-213ENST00000493945 CFDP1Q9UEE9 299 aaPredicted RBP22.89■■□□□ 1.25
ACTB-213ENST00000493945 FANCAO15360 1455 aa22.88■■□□□ 1.25
ACTB-213ENST00000493945 PLEKHH2Q8IVE3 1493 aa22.88■■□□□ 1.25
ACTB-213ENST00000493945 NEO1Q92859 1461 aa22.88■■□□□ 1.25
ACTB-213ENST00000493945 EFCAB2Q5VUJ9 269 aa22.88■■□□□ 1.25
ACTB-213ENST00000493945 PPARGC1BQ86YN6 1023 aaKnown RBP22.86■■□□□ 1.25
ACTB-213ENST00000493945 FGD6Q6ZV73 1430 aa22.84■■□□□ 1.25
ACTB-213ENST00000493945 PPRC1Q5VV67 1664 aaKnown RBP22.83■■□□□ 1.24
ACTB-213ENST00000493945 PTPN23Q9H3S7 1636 aa22.82■■□□□ 1.24
ACTB-213ENST00000493945 ZNF777Q9ULD5 760 aaPredicted RBP22.79■■□□□ 1.24
ACTB-213ENST00000493945 ADGRL1O94910 1474 aa22.79■■□□□ 1.24
ACTB-213ENST00000493945 CAMSAP2Q08AD1 1489 aa22.79■■□□□ 1.24
ACTB-213ENST00000493945 AKNAQ7Z591 1439 aa22.78■■□□□ 1.24
ACTB-213ENST00000493945 ABCC1P33527 1531 aa22.77■■□□□ 1.24
ACTB-213ENST00000493945 SAMD9LQ8IVG5 1584 aa22.77■■□□□ 1.24
ACTB-213ENST00000493945 KIAA1107Q9UPP5 1409 aa22.76■■□□□ 1.23
ACTB-213ENST00000493945 TCOF1Q13428 1488 aaKnown RBP22.75■■□□□ 1.23
ACTB-213ENST00000493945 RRBP1Q9P2E9 1410 aaKnown RBP22.74■■□□□ 1.23
ACTB-213ENST00000493945 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.74■■□□□ 1.23
ACTB-213ENST00000493945 RSPH4AQ5TD94 716 aa22.73■■□□□ 1.23
ACTB-213ENST00000493945 SYCP2Q9BX26 1530 aa22.72■■□□□ 1.23
ACTB-213ENST00000493945 FAM50AQ14320 339 aaKnown RBP22.71■■□□□ 1.23
ACTB-213ENST00000493945 DENND4BO75064 1496 aaPredicted RBP22.71■■□□□ 1.23
ACTB-213ENST00000493945 ARHGEF5Q12774 1597 aa22.71■■□□□ 1.23
ACTB-213ENST00000493945 ZNF518AQ6AHZ1 1483 aa22.7■■□□□ 1.22
ACTB-213ENST00000493945 KDM6BO15054 1643 aa22.69■■□□□ 1.22
ACTB-213ENST00000493945 SCAPERQ9BY12 1400 aa22.69■■□□□ 1.22
ACTB-213ENST00000493945 CCDC141Q6ZP82 1450 aa22.68■■□□□ 1.22
ACTB-213ENST00000493945 DNMT1P26358 1616 aaKnown RBP22.67■■□□□ 1.22
ACTB-213ENST00000493945 POGZQ7Z3K3 1410 aa22.65■■□□□ 1.22
ACTB-213ENST00000493945 CROCC2H7BZ55 1655 aa22.64■■□□□ 1.21
ACTB-213ENST00000493945 RICTORQ6R327 1708 aa22.62■■□□□ 1.21
ACTB-213ENST00000493945 SHANK2Q9UPX8 1470 aa22.62■■□□□ 1.21
ACTB-213ENST00000493945 TSPY4P0CV99 314 aa22.62■■□□□ 1.21
ACTB-213ENST00000493945 TSPY10P0CW01 314 aa22.62■■□□□ 1.21
ACTB-213ENST00000493945 ZNF644Q9H582 1327 aaPredicted RBP22.61■■□□□ 1.21
ACTB-213ENST00000493945 KDM5CP41229 1560 aa22.6■■□□□ 1.21
ACTB-213ENST00000493945 MBD5Q9P267 1494 aa22.6■■□□□ 1.21
ACTB-213ENST00000493945 DAPK1P53355 1430 aa22.59■■□□□ 1.21
ACTB-213ENST00000493945 ZMYM4Q5VZL5 1548 aa22.59■■□□□ 1.21
ACTB-213ENST00000493945 HNRNPMP52272 730 aaKnown RBP eCLIP22.59■■□□□ 1.213e-29■□□□□ 9.6
ACTB-213ENST00000493945 HECW2Q9P2P5 1572 aa22.59■■□□□ 1.21
ACTB-213ENST00000493945 ARHGEF12Q9NZN5 1544 aa22.57■■□□□ 1.2
ACTB-213ENST00000493945 MYT1LQ9UL68 1186 aa22.57■■□□□ 1.2
ACTB-213ENST00000493945 MAGI2Q86UL8 1455 aa22.57■■□□□ 1.2
ACTB-213ENST00000493945 MAST1Q9Y2H9 1570 aa22.57■■□□□ 1.2
ACTB-213ENST00000493945 ADGBQ8N7X0 1667 aa22.57■■□□□ 1.2
ACTB-213ENST00000493945 TRAPPC8Q9Y2L5 1435 aa22.56■■□□□ 1.2
ACTB-213ENST00000493945 SPAG9O60271 1321 aaKnown RBP22.56■■□□□ 1.2
ACTB-213ENST00000493945 FRMPD1Q5SYB0 1578 aa22.55■■□□□ 1.2
ACTB-213ENST00000493945 RTEL1-TNFRSF6BF6WH68 1400 aa22.54■■□□□ 1.2
ACTB-213ENST00000493945 C9orf84Q5VXU9 1444 aa22.54■■□□□ 1.2
ACTB-213ENST00000493945 ATP7AQ04656 1500 aa22.53■■□□□ 1.2
ACTB-213ENST00000493945 TRIM26Q12899 539 aaPredicted RBP22.53■■□□□ 1.2
ACTB-213ENST00000493945 ABCC5O15440 1437 aa22.53■■□□□ 1.2
ACTB-213ENST00000493945 INO80Q9ULG1 1556 aaPredicted RBP22.53■■□□□ 1.2
ACTB-213ENST00000493945 MLH3Q9UHC1 1453 aa22.53■■□□□ 1.2
ACTB-213ENST00000493945 ZFYVE16Q7Z3T8 1539 aa22.52■■□□□ 1.19
ACTB-213ENST00000493945 RAPGEF3O95398 923 aa22.51■■□□□ 1.19
ACTB-213ENST00000493945 ANKRD30AQ9BXX3 1397 aa22.5■■□□□ 1.19
ACTB-213ENST00000493945 PLXNC1O60486 1568 aa22.5■■□□□ 1.19
ACTB-213ENST00000493945 AFAP1Q8N556 730 aa22.5■■□□□ 1.19
ACTB-213ENST00000493945 ITGAEP38570 1179 aa22.49■■□□□ 1.19
ACTB-213ENST00000493945 ADGRL2O95490 1459 aa22.47■■□□□ 1.19
ACTB-213ENST00000493945 ARHGEF40Q8TER5 1519 aa22.47■■□□□ 1.19
ACTB-213ENST00000493945 ROCK1Q13464 1354 aa22.47■■□□□ 1.19
ACTB-213ENST00000493945 COL17A1Q9UMD9 1497 aaPredicted RBP22.47■■□□□ 1.19
ACTB-213ENST00000493945 KIDINS220Q9ULH0 1771 aa22.46■■□□□ 1.19
ACTB-213ENST00000493945 ABCA6Q8N139 1617 aa22.41■■□□□ 1.18
ACTB-213ENST00000493945 DIP2CQ9Y2E4 1556 aa22.41■■□□□ 1.18
ACTB-213ENST00000493945 DUOX2Q9NRD8 1548 aa22.41■■□□□ 1.18
ACTB-213ENST00000493945 CHIC2Q9UKJ5 165 aa22.4■■□□□ 1.18
ACTB-213ENST00000493945 GCC2Q8IWJ2 1684 aa22.39■■□□□ 1.18
ACTB-213ENST00000493945 KIF15Q9NS87 1388 aa22.39■■□□□ 1.18
ACTB-213ENST00000493945 NCOA1Q15788 1441 aa22.39■■□□□ 1.17
ACTB-213ENST00000493945 REREQ9P2R6 1566 aa22.38■■□□□ 1.17
ACTB-213ENST00000493945 ATP10AO60312 1499 aa22.38■■□□□ 1.17
ACTB-213ENST00000493945 ACIN1Q9UKV3 1341 aaKnown RBP22.37■■□□□ 1.17
ACTB-213ENST00000493945 A2MP01023 1474 aa22.36■■□□□ 1.17
ACTB-213ENST00000493945 ERBINQ96RT1 1412 aa22.36■■□□□ 1.17
ACTB-213ENST00000493945 EIF2AK4Q9P2K8 1649 aaKnown RBP22.35■■□□□ 1.17
ACTB-213ENST00000493945 HFM1A2PYH4 1435 aa22.35■■□□□ 1.17
ACTB-213ENST00000493945 PTPRKQ15262 1439 aa22.35■■□□□ 1.17
ACTB-213ENST00000493945 YEATS2Q9ULM3 1422 aa22.34■■□□□ 1.17
ACTB-213ENST00000493945 RRP7BPQ9NSQ0 103 aa22.32■■□□□ 1.16
ACTB-213ENST00000493945 DHX29Q7Z478 1369 aaKnown RBP22.31■■□□□ 1.16
ACTB-213ENST00000493945 ANKRD50Q9ULJ7 1429 aa22.31■■□□□ 1.16
ACTB-213ENST00000493945 AGLP35573 1532 aa22.29■■□□□ 1.16
ACTB-213ENST00000493945 BCORL1Q5H9F3 1711 aa22.28■■□□□ 1.16
ACTB-213ENST00000493945 NAIPQ13075 1403 aa22.27■■□□□ 1.16
ACTB-213ENST00000493945 SETD5Q9C0A6 1442 aa22.26■■□□□ 1.15
ACTB-213ENST00000493945 ARID4BQ4LE39 1312 aaPredicted RBP22.24■■□□□ 1.15
ACTB-213ENST00000493945 FAM135AQ9P2D6 1515 aa22.22■■□□□ 1.15
ACTB-213ENST00000493945 RNF17Q9BXT8 1623 aaKnown RBP22.21■■□□□ 1.15
ACTB-213ENST00000493945 PCGF6Q9BYE7 350 aa22.21■■□□□ 1.15
ACTB-213ENST00000493945 KANK1Q14678 1352 aa22.21■■□□□ 1.15
ACTB-213ENST00000493945 KIF3BO15066 747 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms