RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TSPOAP1O95153 1857 aa21.37■■□□□ 1.01
C9orf3-221ENST00000489562 ARHGAP5Q13017 1502 aa21.36■■□□□ 1.01
C9orf3-221ENST00000489562 PPRC1Q5VV67 1664 aaKnown RBP21.34■■□□□ 1.01
C9orf3-221ENST00000489562 FGD6Q6ZV73 1430 aa21.34■■□□□ 1.01
C9orf3-221ENST00000489562 TEX14Q8IWB6 1497 aa21.33■■□□□ 1.01
C9orf3-221ENST00000489562 CFDP1Q9UEE9 299 aaPredicted RBP21.33■■□□□ 1.01
C9orf3-221ENST00000489562 TRHP20396 242 aaPredicted RBP21.32■■□□□ 1
C9orf3-221ENST00000489562 PTPN23Q9H3S7 1636 aa21.32■■□□□ 1
C9orf3-221ENST00000489562 EFCAB2Q5VUJ9 269 aa21.31■■□□□ 1
C9orf3-221ENST00000489562 FANCAO15360 1455 aa21.31■■□□□ 1
C9orf3-221ENST00000489562 NEO1Q92859 1461 aa21.3■■□□□ 1
C9orf3-221ENST00000489562 RRBP1Q9P2E9 1410 aaKnown RBP21.29■■□□□ 1
C9orf3-221ENST00000489562 TCOF1Q13428 1488 aaKnown RBP21.28■■□□□ 1
C9orf3-221ENST00000489562 PLEKHH2Q8IVE3 1493 aa21.28■■□□□ 1
C9orf3-221ENST00000489562 SAMD9LQ8IVG5 1584 aa21.27■■□□□ 1
C9orf3-221ENST00000489562 CAMSAP2Q08AD1 1489 aa21.26■□□□□ 0.99
C9orf3-221ENST00000489562 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.25■□□□□ 0.996e-10■■■■■ 31.3
C9orf3-221ENST00000489562 ABCC1P33527 1531 aa21.24■□□□□ 0.99
C9orf3-221ENST00000489562 AKNAQ7Z591 1439 aa21.23■□□□□ 0.99
C9orf3-221ENST00000489562 KIAA1107Q9UPP5 1409 aa21.22■□□□□ 0.99
C9orf3-221ENST00000489562 ZNF777Q9ULD5 760 aaPredicted RBP21.22■□□□□ 0.99
C9orf3-221ENST00000489562 ADGRL1O94910 1474 aa21.21■□□□□ 0.99
C9orf3-221ENST00000489562 SYCP2Q9BX26 1530 aa21.19■□□□□ 0.98
C9orf3-221ENST00000489562 ARHGEF5Q12774 1597 aa21.19■□□□□ 0.98
C9orf3-221ENST00000489562 DNMT1P26358 1616 aaKnown RBP21.18■□□□□ 0.98
C9orf3-221ENST00000489562 FAM50AQ14320 339 aaKnown RBP21.17■□□□□ 0.98
C9orf3-221ENST00000489562 ZNF644Q9H582 1327 aaPredicted RBP21.17■□□□□ 0.98
C9orf3-221ENST00000489562 CROCC2H7BZ55 1655 aa21.15■□□□□ 0.98
C9orf3-221ENST00000489562 SCAPERQ9BY12 1400 aa21.15■□□□□ 0.98
C9orf3-221ENST00000489562 RSPH4AQ5TD94 716 aa21.15■□□□□ 0.98
C9orf3-221ENST00000489562 MBD5Q9P267 1494 aa21.14■□□□□ 0.98
C9orf3-221ENST00000489562 ARHGEF12Q9NZN5 1544 aa21.14■□□□□ 0.97
C9orf3-221ENST00000489562 CCDC141Q6ZP82 1450 aa21.13■□□□□ 0.97
C9orf3-221ENST00000489562 DENND4BO75064 1496 aaPredicted RBP21.13■□□□□ 0.97
C9orf3-221ENST00000489562 RICTORQ6R327 1708 aa21.12■□□□□ 0.97
C9orf3-221ENST00000489562 ZNF518AQ6AHZ1 1483 aa21.12■□□□□ 0.97
C9orf3-221ENST00000489562 POGZQ7Z3K3 1410 aa21.11■□□□□ 0.97
C9orf3-221ENST00000489562 SHANK2Q9UPX8 1470 aa21.1■□□□□ 0.97
C9orf3-221ENST00000489562 TRIM26Q12899 539 aaPredicted RBP21.1■□□□□ 0.97
C9orf3-221ENST00000489562 DAPK1P53355 1430 aa21.1■□□□□ 0.97
C9orf3-221ENST00000489562 HNRNPMP52272 730 aaKnown RBP eCLIP21.09■□□□□ 0.971e-6■■■□□ 19
C9orf3-221ENST00000489562 KDM5CP41229 1560 aa21.09■□□□□ 0.97
C9orf3-221ENST00000489562 KDM6BO15054 1643 aa21.07■□□□□ 0.96
C9orf3-221ENST00000489562 MAST1Q9Y2H9 1570 aa21.07■□□□□ 0.96
C9orf3-221ENST00000489562 ABCC5O15440 1437 aa21.07■□□□□ 0.96
C9orf3-221ENST00000489562 TRAPPC8Q9Y2L5 1435 aa21.07■□□□□ 0.96
C9orf3-221ENST00000489562 ADGBQ8N7X0 1667 aa21.07■□□□□ 0.96
C9orf3-221ENST00000489562 FRMPD1Q5SYB0 1578 aa21.06■□□□□ 0.96
C9orf3-221ENST00000489562 ZMYM4Q5VZL5 1548 aa21.05■□□□□ 0.96
C9orf3-221ENST00000489562 TSPY4P0CV99 314 aa21.04■□□□□ 0.96
C9orf3-221ENST00000489562 TSPY10P0CW01 314 aa21.04■□□□□ 0.96
C9orf3-221ENST00000489562 HECW2Q9P2P5 1572 aa21.04■□□□□ 0.96
C9orf3-221ENST00000489562 INO80Q9ULG1 1556 aaPredicted RBP21.03■□□□□ 0.96
C9orf3-221ENST00000489562 RTEL1-TNFRSF6BF6WH68 1400 aa21.02■□□□□ 0.96
C9orf3-221ENST00000489562 C9orf84Q5VXU9 1444 aa21.02■□□□□ 0.96
C9orf3-221ENST00000489562 COL17A1Q9UMD9 1497 aaPredicted RBP21.01■□□□□ 0.95
C9orf3-221ENST00000489562 AFAP1Q8N556 730 aa21.01■□□□□ 0.95
C9orf3-221ENST00000489562 MLH3Q9UHC1 1453 aa21.01■□□□□ 0.95
C9orf3-221ENST00000489562 ATP7AQ04656 1500 aa21■□□□□ 0.95
C9orf3-221ENST00000489562 ZFYVE16Q7Z3T8 1539 aa21■□□□□ 0.95
C9orf3-221ENST00000489562 PLXNC1O60486 1568 aa21■□□□□ 0.95
C9orf3-221ENST00000489562 SPAG9O60271 1321 aaKnown RBP21■□□□□ 0.95
C9orf3-221ENST00000489562 ADGRL2O95490 1459 aa21■□□□□ 0.95
C9orf3-221ENST00000489562 MAGI2Q86UL8 1455 aa21■□□□□ 0.95
C9orf3-221ENST00000489562 KIDINS220Q9ULH0 1771 aa21■□□□□ 0.95
C9orf3-221ENST00000489562 RAPGEF3O95398 923 aa20.99■□□□□ 0.95
C9orf3-221ENST00000489562 ROCK1Q13464 1354 aa20.98■□□□□ 0.95
C9orf3-221ENST00000489562 PTPRKQ15262 1439 aa20.98■□□□□ 0.95
C9orf3-221ENST00000489562 ITGAEP38570 1179 aa20.98■□□□□ 0.95
C9orf3-221ENST00000489562 ANKRD30AQ9BXX3 1397 aa20.97■□□□□ 0.95
C9orf3-221ENST00000489562 GCC2Q8IWJ2 1684 aa20.93■□□□□ 0.94
C9orf3-221ENST00000489562 NCOA1Q15788 1441 aa20.93■□□□□ 0.94
C9orf3-221ENST00000489562 CHIC2Q9UKJ5 165 aa20.92■□□□□ 0.94
C9orf3-221ENST00000489562 ARHGEF40Q8TER5 1519 aa20.92■□□□□ 0.94
C9orf3-221ENST00000489562 ABCA6Q8N139 1617 aa20.92■□□□□ 0.94
C9orf3-221ENST00000489562 MYT1LQ9UL68 1186 aa20.91■□□□□ 0.94
C9orf3-221ENST00000489562 DIP2CQ9Y2E4 1556 aa20.9■□□□□ 0.94
C9orf3-221ENST00000489562 HFM1A2PYH4 1435 aa20.89■□□□□ 0.94
C9orf3-221ENST00000489562 DUOX2Q9NRD8 1548 aa20.88■□□□□ 0.93
C9orf3-221ENST00000489562 KIF15Q9NS87 1388 aa20.88■□□□□ 0.93
C9orf3-221ENST00000489562 REREQ9P2R6 1566 aa20.87■□□□□ 0.93
C9orf3-221ENST00000489562 YEATS2Q9ULM3 1422 aa20.86■□□□□ 0.93
C9orf3-221ENST00000489562 NAIPQ13075 1403 aa20.85■□□□□ 0.93
C9orf3-221ENST00000489562 ATP10AO60312 1499 aa20.84■□□□□ 0.93
C9orf3-221ENST00000489562 AEBP2Q6ZN18 517 aaPredicted RBP20.84■□□□□ 0.93
C9orf3-221ENST00000489562 RRP7BPQ9NSQ0 103 aa20.84■□□□□ 0.93
C9orf3-221ENST00000489562 EIF2AK4Q9P2K8 1649 aaKnown RBP20.84■□□□□ 0.93
C9orf3-221ENST00000489562 A2MP01023 1474 aa20.83■□□□□ 0.93
C9orf3-221ENST00000489562 PCGF6Q9BYE7 350 aa20.83■□□□□ 0.93
C9orf3-221ENST00000489562 ERBINQ96RT1 1412 aa20.83■□□□□ 0.93
C9orf3-221ENST00000489562 BCORL1Q5H9F3 1711 aa20.81■□□□□ 0.92
C9orf3-221ENST00000489562 ANKRD50Q9ULJ7 1429 aa20.81■□□□□ 0.92
C9orf3-221ENST00000489562 DHX29Q7Z478 1369 aaKnown RBP20.81■□□□□ 0.92
C9orf3-221ENST00000489562 SETD5Q9C0A6 1442 aa20.8■□□□□ 0.92
C9orf3-221ENST00000489562 AGLP35573 1532 aa20.78■□□□□ 0.92
C9orf3-221ENST00000489562 ACIN1Q9UKV3 1341 aaKnown RBP20.78■□□□□ 0.92
C9orf3-221ENST00000489562 RNF17Q9BXT8 1623 aaKnown RBP20.74■□□□□ 0.91
C9orf3-221ENST00000489562 HRCP23327 699 aa20.73■□□□□ 0.91
C9orf3-221ENST00000489562 DEPDC5O75140 1603 aa20.73■□□□□ 0.91
C9orf3-221ENST00000489562 RAB3GAP2Q9H2M9 1393 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms