RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 NISCHQ9Y2I1 1504 aa32.8■■■□□ 2.84
C9orf3-221ENST00000489562 CCDC180Q9P1Z9 1646 aa29.04■■■□□ 2.24
C9orf3-221ENST00000489562 ABCC9O60706 1549 aa27.75■■■□□ 2.03
C9orf3-221ENST00000489562 ZCCHC6Q5VYS8 1495 aaKnown RBP27.44■■□□□ 1.98
C9orf3-221ENST00000489562 DCAF1Q9Y4B6 1507 aa27.22■■□□□ 1.95
C9orf3-221ENST00000489562 MYO15BQ96JP2 1530 aa27.16■■□□□ 1.94
C9orf3-221ENST00000489562 NACADO15069 1562 aa27.13■■□□□ 1.93
C9orf3-221ENST00000489562 DCAF8L2P0C7V8 631 aa27.07■■□□□ 1.92
C9orf3-221ENST00000489562 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
C9orf3-221ENST00000489562 UNC13AQ9UPW8 1703 aa26.45■■□□□ 1.83
C9orf3-221ENST00000489562 SCRIBQ14160 1630 aa26.43■■□□□ 1.82
C9orf3-221ENST00000489562 BICRAQ9NZM4 1560 aa26.14■■□□□ 1.78
C9orf3-221ENST00000489562 SHROOM4Q9ULL8 1493 aa26.11■■□□□ 1.77
C9orf3-221ENST00000489562 PABPN1Q86U42 306 aaKnown RBP eCLIP25.95■■□□□ 1.74
C9orf3-221ENST00000489562 BAZ1AQ9NRL2 1556 aaPredicted RBP25.43■■□□□ 1.66
C9orf3-221ENST00000489562 CECR2Q9BXF3 1484 aa25.42■■□□□ 1.66
C9orf3-221ENST00000489562 EIF4G1Q04637 1599 aaKnown RBP25.42■■□□□ 1.66
C9orf3-221ENST00000489562 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
C9orf3-221ENST00000489562 MROH2BQ7Z745 1585 aa25.26■■□□□ 1.63
C9orf3-221ENST00000489562 CC2D2AQ9P2K1 1620 aa25.19■■□□□ 1.62
C9orf3-221ENST00000489562 RSF1Q96T23 1441 aaPredicted RBP25.15■■□□□ 1.62
C9orf3-221ENST00000489562 PEG3Q9GZU2 1588 aa25.14■■□□□ 1.61
C9orf3-221ENST00000489562 SMARCA2P51531 1590 aa25.11■■□□□ 1.61
C9orf3-221ENST00000489562 ATAD2BQ9ULI0 1458 aa25.05■■□□□ 1.6
C9orf3-221ENST00000489562 WIZO95785 1651 aa25.04■■□□□ 1.6
C9orf3-221ENST00000489562 NCAPD3P42695 1498 aa24.97■■□□□ 1.59
C9orf3-221ENST00000489562 HMGXB3Q12766 1538 aa24.96■■□□□ 1.59
C9orf3-221ENST00000489562 BAZ1BQ9UIG0 1483 aaKnown RBP24.9■■□□□ 1.58
C9orf3-221ENST00000489562 DNAJC5BQ9UF47 199 aa24.9■■□□□ 1.58
C9orf3-221ENST00000489562 SUPT5HO00267 1087 aaKnown RBP24.84■■□□□ 1.57
C9orf3-221ENST00000489562 TOP2AP11388 1531 aaKnown RBP24.83■■□□□ 1.57
C9orf3-221ENST00000489562 CCDC88BA6NC98 1476 aa24.47■■□□□ 1.51
C9orf3-221ENST00000489562 LAMC3Q9Y6N6 1575 aa24.29■■□□□ 1.48
C9orf3-221ENST00000489562 CADPSQ9ULU8 1353 aa24.26■■□□□ 1.47
C9orf3-221ENST00000489562 PRDM2Q13029 1718 aa24.25■■□□□ 1.47
C9orf3-221ENST00000489562 CFTRP13569 1480 aa24.24■■□□□ 1.47
C9orf3-221ENST00000489562 NESP48681 1621 aa24.16■■□□□ 1.46
C9orf3-221ENST00000489562 PDS5BQ9NTI5 1447 aa24.06■■□□□ 1.44
C9orf3-221ENST00000489562 FANCD2Q9BXW9 1451 aa23.99■■□□□ 1.43
C9orf3-221ENST00000489562 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
C9orf3-221ENST00000489562 CEP164Q9UPV0 1460 aa23.94■■□□□ 1.42
C9orf3-221ENST00000489562 ERCC6Q03468 1493 aa23.92■■□□□ 1.42
C9orf3-221ENST00000489562 MRC2Q9UBG0 1479 aa23.78■■□□□ 1.4
C9orf3-221ENST00000489562 ABCC8Q09428 1581 aa23.76■■□□□ 1.39
C9orf3-221ENST00000489562 THOC2Q8NI27 1593 aaKnown RBP23.76■■□□□ 1.39
C9orf3-221ENST00000489562 DNMBPQ6XZF7 1577 aa23.73■■□□□ 1.39
C9orf3-221ENST00000489562 WRNQ14191 1432 aaPredicted RBP eCLIP23.72■■□□□ 1.39
C9orf3-221ENST00000489562 WDR62O43379 1518 aa23.7■■□□□ 1.38
C9orf3-221ENST00000489562 URB2Q14146 1524 aaKnown RBP23.7■■□□□ 1.38
C9orf3-221ENST00000489562 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
C9orf3-221ENST00000489562 CUX1P39880 1505 aa23.68■■□□□ 1.38
C9orf3-221ENST00000489562 TOPBP1Q92547 1522 aa23.68■■□□□ 1.38
C9orf3-221ENST00000489562 TOP2BQ02880 1626 aa23.66■■□□□ 1.38
C9orf3-221ENST00000489562 SYNJ1O43426 1573 aa23.64■■□□□ 1.37
C9orf3-221ENST00000489562 FGD5Q6ZNL6 1462 aa23.52■■□□□ 1.36
C9orf3-221ENST00000489562 CUX2O14529 1486 aa23.51■■□□□ 1.35
C9orf3-221ENST00000489562 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
C9orf3-221ENST00000489562 POLA1P09884 1462 aaPredicted RBP23.49■■□□□ 1.35
C9orf3-221ENST00000489562 TRIM41Q8WV44 630 aa23.48■■□□□ 1.35
C9orf3-221ENST00000489562 IFT140Q96RY7 1462 aa23.41■■□□□ 1.34
C9orf3-221ENST00000489562 TARBP1Q13395 1621 aaKnown RBP23.39■■□□□ 1.33
C9orf3-221ENST00000489562 SOGA1O94964 1423 aa23.39■■□□□ 1.33
C9orf3-221ENST00000489562 WDR97A6NE52 1622 aa23.37■■□□□ 1.33
C9orf3-221ENST00000489562 ABCA10Q8WWZ4 1543 aa23.34■■□□□ 1.33
C9orf3-221ENST00000489562 RAD54L2Q9Y4B4 1467 aa23.34■■□□□ 1.33
C9orf3-221ENST00000489562 DNAJC5Q9H3Z4 198 aa23.25■■□□□ 1.31
C9orf3-221ENST00000489562 ABCA5Q8WWZ7 1642 aa23.22■■□□□ 1.31
C9orf3-221ENST00000489562 EIF4G3O43432 1585 aaKnown RBP23.21■■□□□ 1.31
C9orf3-221ENST00000489562 KIF27Q86VH2 1401 aa23.2■■□□□ 1.3
C9orf3-221ENST00000489562 ZNF608Q9ULD9 1512 aaPredicted RBP23.19■■□□□ 1.3
C9orf3-221ENST00000489562 TDRD9Q8NDG6 1382 aaKnown RBP23.16■■□□□ 1.3
C9orf3-221ENST00000489562 GAPVD1Q14C86 1478 aa23.16■■□□□ 1.3
C9orf3-221ENST00000489562 EEA1Q15075 1411 aa23.16■■□□□ 1.3
C9orf3-221ENST00000489562 PBRM1Q86U86 1689 aa23.15■■□□□ 1.3
C9orf3-221ENST00000489562 AQRO60306 1485 aaKnown RBP eCLIP23.12■■□□□ 1.294e-7■■■□□ 18.5
C9orf3-221ENST00000489562 GRIN2BQ13224 1484 aa23.1■■□□□ 1.29
C9orf3-221ENST00000489562 ERICH3Q5RHP9 1530 aa23.09■■□□□ 1.29
C9orf3-221ENST00000489562 RUSC2Q8N2Y8 1516 aa23.07■■□□□ 1.28
C9orf3-221ENST00000489562 CUL7Q14999 1698 aa23.03■■□□□ 1.28
C9orf3-221ENST00000489562 MAGI1Q96QZ7 1491 aaPredicted RBP23■■□□□ 1.27
C9orf3-221ENST00000489562 IGF1RP08069 1367 aa22.99■■□□□ 1.27
C9orf3-221ENST00000489562 SNAPC4Q5SXM2 1469 aa22.96■■□□□ 1.27
C9orf3-221ENST00000489562 ADAMTS12P58397 1594 aa22.96■■□□□ 1.27
C9orf3-221ENST00000489562 CSRNP3Q8WYN3 585 aa22.95■■□□□ 1.26
C9orf3-221ENST00000489562 FHAD1B1AJZ9 1412 aa22.91■■□□□ 1.26
C9orf3-221ENST00000489562 FAM9AQ8IZU1 332 aaPredicted RBP22.91■■□□□ 1.26
C9orf3-221ENST00000489562 CARMIL1Q5VZK9 1371 aa22.89■■□□□ 1.25
C9orf3-221ENST00000489562 SYNJ2O15056 1496 aa22.88■■□□□ 1.25
C9orf3-221ENST00000489562 PRXQ9BXM0 1461 aa22.87■■□□□ 1.25
C9orf3-221ENST00000489562 KIF21BO75037 1637 aa22.87■■□□□ 1.25
C9orf3-221ENST00000489562 CHD1O14646 1710 aa22.85■■□□□ 1.25
C9orf3-221ENST00000489562 RAPGEF2Q9Y4G8 1499 aa22.84■■□□□ 1.25
C9orf3-221ENST00000489562 GRIN2AQ12879 1464 aa22.79■■□□□ 1.24
C9orf3-221ENST00000489562 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
C9orf3-221ENST00000489562 GOLGA3Q08378 1498 aa22.74■■□□□ 1.23
C9orf3-221ENST00000489562 FBLN2P98095 1184 aa22.73■■□□□ 1.23
C9orf3-221ENST00000489562 CTTNBP2Q8WZ74 1663 aa22.68■■□□□ 1.22
C9orf3-221ENST00000489562 NUP160Q12769 1436 aa22.66■■□□□ 1.22
C9orf3-221ENST00000489562 CEP170Q5SW79 1584 aa22.64■■□□□ 1.22
C9orf3-221ENST00000489562 KIAA0586Q9BVV6 1533 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 176.1 ms