RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 LTBP4Q8N2S1 1624 aa20.17■□□□□ 0.82
HDAC6-233ENST00000489352 MAGI2Q86UL8 1455 aa20.16■□□□□ 0.82
HDAC6-233ENST00000489352 ZMYM4Q5VZL5 1548 aa20.15■□□□□ 0.82
HDAC6-233ENST00000489352 P3H3Q8IVL6 736 aa20.14■□□□□ 0.81
HDAC6-233ENST00000489352 ARHGEF12Q9NZN5 1544 aa20.12■□□□□ 0.81
HDAC6-233ENST00000489352 PHF23Q9BUL5 403 aaPredicted RBP20.1■□□□□ 0.81
HDAC6-233ENST00000489352 HECW1Q76N89 1606 aa20.09■□□□□ 0.81
HDAC6-233ENST00000489352 MED1Q15648 1581 aaPredicted RBP20.08■□□□□ 0.8
HDAC6-233ENST00000489352 SCAF1Q9H7N4 1312 aaKnown RBP20.06■□□□□ 0.8
HDAC6-233ENST00000489352 ATP10AO60312 1499 aa20.06■□□□□ 0.8
HDAC6-233ENST00000489352 RAPGEF6Q8TEU7 1601 aa20.06■□□□□ 0.8
HDAC6-233ENST00000489352 PLEKHD1A6NEE1 506 aa20.06■□□□□ 0.8
HDAC6-233ENST00000489352 ESF1Q9H501 851 aaKnown RBP20.05■□□□□ 0.8
HDAC6-233ENST00000489352 C9orf84Q5VXU9 1444 aa20.03■□□□□ 0.8
HDAC6-233ENST00000489352 C3P01024 1663 aa20■□□□□ 0.79
HDAC6-233ENST00000489352 MYT1LQ9UL68 1186 aa19.99■□□□□ 0.79
HDAC6-233ENST00000489352 SCAPERQ9BY12 1400 aa19.98■□□□□ 0.79
HDAC6-233ENST00000489352 NCOA1Q15788 1441 aa19.97■□□□□ 0.79
HDAC6-233ENST00000489352 HSPA1LP34931 641 aa19.97■□□□□ 0.79
HDAC6-233ENST00000489352 ZNF335Q9H4Z2 1342 aaPredicted RBP19.97■□□□□ 0.79
HDAC6-233ENST00000489352 PIP4K2BP78356 416 aa19.96■□□□□ 0.79
HDAC6-233ENST00000489352 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.96■□□□□ 0.79
HDAC6-233ENST00000489352 TRAPPC8Q9Y2L5 1435 aa19.93■□□□□ 0.78
HDAC6-233ENST00000489352 CAMSAP1Q5T5Y3 1602 aa19.93■□□□□ 0.78
HDAC6-233ENST00000489352 NUP153P49790 1475 aaKnown RBP19.91■□□□□ 0.78
HDAC6-233ENST00000489352 TOM1O60784 492 aa19.9■□□□□ 0.78
HDAC6-233ENST00000489352 NCKAP5LQ9HCH0 1330 aa19.9■□□□□ 0.78
HDAC6-233ENST00000489352 SUPT6HQ7KZ85 1726 aaKnown RBP19.88■□□□□ 0.77
HDAC6-233ENST00000489352 SAMD9Q5K651 1589 aa19.85■□□□□ 0.77
HDAC6-233ENST00000489352 EFCAB2Q5VUJ9 269 aa19.84■□□□□ 0.77
HDAC6-233ENST00000489352 PKD2Q13563 968 aa19.83■□□□□ 0.77
HDAC6-233ENST00000489352 PLCH2O75038 1416 aa19.83■□□□□ 0.76
HDAC6-233ENST00000489352 ZNF518AQ6AHZ1 1483 aa19.82■□□□□ 0.76
HDAC6-233ENST00000489352 MYO5CQ9NQX4 1742 aa19.8■□□□□ 0.76
HDAC6-233ENST00000489352 RANGAP1P46060 587 aaPredicted RBP19.8■□□□□ 0.76
HDAC6-233ENST00000489352 PRXQ9BXM0 1461 aa19.79■□□□□ 0.76
HDAC6-233ENST00000489352 CNTLNQ9NXG0 1405 aa19.78■□□□□ 0.76
HDAC6-233ENST00000489352 PPP6R1Q9UPN7 881 aa19.78■□□□□ 0.76
HDAC6-233ENST00000489352 AFAP1Q8N556 730 aa19.77■□□□□ 0.76
HDAC6-233ENST00000489352 DIP2CQ9Y2E4 1556 aa19.76■□□□□ 0.75
HDAC6-233ENST00000489352 AGLP35573 1532 aa19.76■□□□□ 0.75
HDAC6-233ENST00000489352 REREQ9P2R6 1566 aa19.75■□□□□ 0.75
HDAC6-233ENST00000489352 NPATQ14207 1427 aa19.75■□□□□ 0.75
HDAC6-233ENST00000489352 SENP3Q9H4L4 574 aaPredicted RBP19.74■□□□□ 0.75
HDAC6-233ENST00000489352 KDM5CP41229 1560 aa19.72■□□□□ 0.75
HDAC6-233ENST00000489352 PLA2R1Q13018 1463 aa19.72■□□□□ 0.75
HDAC6-233ENST00000489352 MROH2AA6NES4 1674 aa19.71■□□□□ 0.75
HDAC6-233ENST00000489352 ABCA6Q8N139 1617 aa19.7■□□□□ 0.74
HDAC6-233ENST00000489352 PTPRKQ15262 1439 aa19.69■□□□□ 0.74
HDAC6-233ENST00000489352 CPS1P31327 1500 aa19.69■□□□□ 0.74
HDAC6-233ENST00000489352 ARHGAP5Q13017 1502 aa19.68■□□□□ 0.74
HDAC6-233ENST00000489352 ZNF142P52746 1687 aaPredicted RBP19.68■□□□□ 0.74
HDAC6-233ENST00000489352 ZMYM3Q14202 1370 aa19.68■□□□□ 0.74
HDAC6-233ENST00000489352 TCOF1Q13428 1488 aaKnown RBP19.67■□□□□ 0.74
HDAC6-233ENST00000489352 MYO3AQ8NEV4 1616 aa19.66■□□□□ 0.74
HDAC6-233ENST00000489352 CDK13Q14004 1512 aaKnown RBP19.65■□□□□ 0.74
HDAC6-233ENST00000489352 CEP170BQ9Y4F5 1589 aaPredicted RBP19.65■□□□□ 0.74
HDAC6-233ENST00000489352 ATP1B4Q9UN42 357 aaPredicted RBP19.64■□□□□ 0.73
HDAC6-233ENST00000489352 MLH3Q9UHC1 1453 aa19.64■□□□□ 0.73
HDAC6-233ENST00000489352 CDK11AQ9UQ88 783 aaPredicted RBP19.63■□□□□ 0.73
HDAC6-233ENST00000489352 SHANK2Q9UPX8 1470 aa19.61■□□□□ 0.73
HDAC6-233ENST00000489352 CLTCQ00610 1675 aaKnown RBP19.6■□□□□ 0.73
HDAC6-233ENST00000489352 RGS17Q9UGC6 210 aaPredicted RBP19.6■□□□□ 0.73
HDAC6-233ENST00000489352 POLR1AO95602 1720 aaPredicted RBP19.59■□□□□ 0.73
HDAC6-233ENST00000489352 KIF14Q15058 1648 aa19.58■□□□□ 0.72
HDAC6-233ENST00000489352 KIDINS220Q9ULH0 1771 aa19.55■□□□□ 0.72
HDAC6-233ENST00000489352 CDC42BPBQ9Y5S2 1711 aa19.52■□□□□ 0.72
HDAC6-233ENST00000489352 DNMT1P26358 1616 aaKnown RBP19.51■□□□□ 0.71
HDAC6-233ENST00000489352 CLIP1P30622 1438 aa19.51■□□□□ 0.71
HDAC6-233ENST00000489352 ITSN2Q9NZM3 1697 aa19.5■□□□□ 0.71
HDAC6-233ENST00000489352 A2ML1A8K2U0 1454 aa19.49■□□□□ 0.71
HDAC6-233ENST00000489352 POTEAQ6S8J7 498 aa19.49■□□□□ 0.71
HDAC6-233ENST00000489352 CSRNP3Q8WYN3 585 aa19.49■□□□□ 0.71
HDAC6-233ENST00000489352 ALKQ9UM73 1620 aa19.48■□□□□ 0.71
HDAC6-233ENST00000489352 ANKLE2Q86XL3 938 aa19.48■□□□□ 0.71
HDAC6-233ENST00000489352 GGT6Q6P531 493 aa19.47■□□□□ 0.71
HDAC6-233ENST00000489352 ABCC1P33527 1531 aa19.46■□□□□ 0.71
HDAC6-233ENST00000489352 SETD1AO15047 1707 aaKnown RBP19.45■□□□□ 0.7
HDAC6-233ENST00000489352 NEURL4Q96JN8 1562 aa19.44■□□□□ 0.7
HDAC6-233ENST00000489352 VWDEQ8N2E2 1590 aa19.44■□□□□ 0.7
HDAC6-233ENST00000489352 RNF17Q9BXT8 1623 aaKnown RBP19.43■□□□□ 0.7
HDAC6-233ENST00000489352 TROQ12816 1431 aaPredicted RBP19.43■□□□□ 0.7
HDAC6-233ENST00000489352 PREX2Q70Z35 1606 aa19.42■□□□□ 0.7
HDAC6-233ENST00000489352 SPAG9O60271 1321 aaKnown RBP19.41■□□□□ 0.7
HDAC6-233ENST00000489352 THEMISQ8N1K5 641 aaPredicted RBP19.39■□□□□ 0.69
HDAC6-233ENST00000489352 ZNF777Q9ULD5 760 aaPredicted RBP19.38■□□□□ 0.69
HDAC6-233ENST00000489352 SAMD9LQ8IVG5 1584 aa19.37■□□□□ 0.69
HDAC6-233ENST00000489352 NPHP4O75161 1426 aaPredicted RBP19.37■□□□□ 0.69
HDAC6-233ENST00000489352 FMN1Q68DA7 1419 aa19.37■□□□□ 0.69
HDAC6-233ENST00000489352 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.37■□□□□ 0.69
HDAC6-233ENST00000489352 LRRC7Q96NW7 1537 aa19.36■□□□□ 0.69
HDAC6-233ENST00000489352 SYNMO15061 1565 aa19.36■□□□□ 0.69
HDAC6-233ENST00000489352 IQGAP1P46940 1657 aa19.35■□□□□ 0.69
HDAC6-233ENST00000489352 STRCP1A6NGW2 1772 aa19.34■□□□□ 0.69
HDAC6-233ENST00000489352 A2MP01023 1474 aa19.34■□□□□ 0.69
HDAC6-233ENST00000489352 TNRQ92752 1358 aa19.33■□□□□ 0.69
HDAC6-233ENST00000489352 DEPDC5O75140 1603 aa19.33■□□□□ 0.68
HDAC6-233ENST00000489352 UPF1Q92900 1129 aaKnown RBP eCLIP19.32■□□□□ 0.68
HDAC6-233ENST00000489352 CDC42BPAQ5VT25 1732 aa19.31■□□□□ 0.68
HDAC6-233ENST00000489352 ATP7AQ04656 1500 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms