RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
HDAC6-233ENST00000489352 ABCC9O60706 1549 aa28.35■■■□□ 2.13
HDAC6-233ENST00000489352 DNAJC5BQ9UF47 199 aa27.41■■□□□ 1.98
HDAC6-233ENST00000489352 CCDC180Q9P1Z9 1646 aa27.34■■□□□ 1.97
HDAC6-233ENST00000489352 RB1CC1Q8TDY2 1594 aa26.56■■□□□ 1.84
HDAC6-233ENST00000489352 PABPN1Q86U42 306 aaKnown RBP eCLIP26.24■■□□□ 1.79
HDAC6-233ENST00000489352 NACADO15069 1562 aa26.08■■□□□ 1.77
HDAC6-233ENST00000489352 DNAJC5Q9H3Z4 198 aa26.01■■□□□ 1.75
HDAC6-233ENST00000489352 UNC13AQ9UPW8 1703 aa25.95■■□□□ 1.74
HDAC6-233ENST00000489352 DCAF8L2P0C7V8 631 aa25.93■■□□□ 1.74
HDAC6-233ENST00000489352 BICRAQ9NZM4 1560 aa25.69■■□□□ 1.7
HDAC6-233ENST00000489352 CECR2Q9BXF3 1484 aa25.64■■□□□ 1.69
HDAC6-233ENST00000489352 CC2D2AQ9P2K1 1620 aa25.55■■□□□ 1.68
HDAC6-233ENST00000489352 MYO15BQ96JP2 1530 aa25.3■■□□□ 1.64
HDAC6-233ENST00000489352 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
HDAC6-233ENST00000489352 EIF4G1Q04637 1599 aaKnown RBP25.22■■□□□ 1.63
HDAC6-233ENST00000489352 SCRIBQ14160 1630 aa24.86■■□□□ 1.57
HDAC6-233ENST00000489352 CUX2O14529 1486 aa24.84■■□□□ 1.57
HDAC6-233ENST00000489352 ERCC6Q03468 1493 aa24.64■■□□□ 1.53
HDAC6-233ENST00000489352 DCAF1Q9Y4B6 1507 aa24.61■■□□□ 1.53
HDAC6-233ENST00000489352 TRIM41Q8WV44 630 aa24.56■■□□□ 1.52
HDAC6-233ENST00000489352 ZCCHC6Q5VYS8 1495 aaKnown RBP24.52■■□□□ 1.52
HDAC6-233ENST00000489352 NCAPD3P42695 1498 aa24.04■■□□□ 1.44
HDAC6-233ENST00000489352 NESP48681 1621 aa24.02■■□□□ 1.44
HDAC6-233ENST00000489352 THOC2Q8NI27 1593 aaKnown RBP23.96■■□□□ 1.43
HDAC6-233ENST00000489352 SMARCA2P51531 1590 aa23.83■■□□□ 1.41
HDAC6-233ENST00000489352 ATAD2BQ9ULI0 1458 aa23.82■■□□□ 1.4
HDAC6-233ENST00000489352 HMGXB3Q12766 1538 aa23.78■■□□□ 1.4
HDAC6-233ENST00000489352 KIF21AQ7Z4S6 1674 aa23.75■■□□□ 1.39
HDAC6-233ENST00000489352 LAMC3Q9Y6N6 1575 aa23.74■■□□□ 1.39
HDAC6-233ENST00000489352 PDS5BQ9NTI5 1447 aa23.66■■□□□ 1.38
HDAC6-233ENST00000489352 OSCARQ8IYS5 282 aa23.63■■□□□ 1.37
HDAC6-233ENST00000489352 BAZ1AQ9NRL2 1556 aaPredicted RBP23.63■■□□□ 1.37
HDAC6-233ENST00000489352 BAZ1BQ9UIG0 1483 aaKnown RBP23.62■■□□□ 1.37
HDAC6-233ENST00000489352 SMARCA4P51532 1647 aa23.58■■□□□ 1.36
HDAC6-233ENST00000489352 MRC2Q9UBG0 1479 aa23.47■■□□□ 1.35
HDAC6-233ENST00000489352 AEBP2Q6ZN18 517 aaPredicted RBP23.46■■□□□ 1.35
HDAC6-233ENST00000489352 WDR62O43379 1518 aa23.4■■□□□ 1.34
HDAC6-233ENST00000489352 RIMBP3CA6NJZ7 1639 aa23.37■■□□□ 1.33
HDAC6-233ENST00000489352 RIMBP3BA6NNM3 1639 aa23.37■■□□□ 1.33
HDAC6-233ENST00000489352 RIMBP3Q9UFD9 1639 aa23.37■■□□□ 1.33
HDAC6-233ENST00000489352 TRHP20396 242 aaPredicted RBP23.31■■□□□ 1.32
HDAC6-233ENST00000489352 CADPSQ9ULU8 1353 aa23.29■■□□□ 1.32
HDAC6-233ENST00000489352 PEG3Q9GZU2 1588 aa23.29■■□□□ 1.32
HDAC6-233ENST00000489352 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
HDAC6-233ENST00000489352 ARHGEF11O15085 1522 aa23.16■■□□□ 1.3
HDAC6-233ENST00000489352 CYB5RLQ6IPT4 315 aa23.15■■□□□ 1.3
HDAC6-233ENST00000489352 FANCD2Q9BXW9 1451 aa23.05■■□□□ 1.28
HDAC6-233ENST00000489352 MROH2BQ7Z745 1585 aa23.02■■□□□ 1.28
HDAC6-233ENST00000489352 URB2Q14146 1524 aaKnown RBP22.87■■□□□ 1.25
HDAC6-233ENST00000489352 ARAP1Q96P48 1450 aa22.82■■□□□ 1.24
HDAC6-233ENST00000489352 CFTRP13569 1480 aa22.78■■□□□ 1.24
HDAC6-233ENST00000489352 ZNF608Q9ULD9 1512 aaPredicted RBP22.77■■□□□ 1.24
HDAC6-233ENST00000489352 WIZO95785 1651 aa22.76■■□□□ 1.23
HDAC6-233ENST00000489352 IFT140Q96RY7 1462 aa22.75■■□□□ 1.23
HDAC6-233ENST00000489352 CHD1O14646 1710 aa22.73■■□□□ 1.23
HDAC6-233ENST00000489352 FBLN2P98095 1184 aa22.7■■□□□ 1.22
HDAC6-233ENST00000489352 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
HDAC6-233ENST00000489352 EIF4G3O43432 1585 aaKnown RBP22.64■■□□□ 1.22
HDAC6-233ENST00000489352 PRDM2Q13029 1718 aa22.6■■□□□ 1.21
HDAC6-233ENST00000489352 AQRO60306 1485 aaKnown RBP eCLIP22.48■■□□□ 1.192e-14■■■■■ 33.6
HDAC6-233ENST00000489352 TOPBP1Q92547 1522 aa22.48■■□□□ 1.19
HDAC6-233ENST00000489352 ILDR1Q86SU0 546 aaPredicted RBP22.45■■□□□ 1.18
HDAC6-233ENST00000489352 ABCC8Q09428 1581 aa22.43■■□□□ 1.18
HDAC6-233ENST00000489352 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
HDAC6-233ENST00000489352 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
HDAC6-233ENST00000489352 SYNJ1O43426 1573 aa22.33■■□□□ 1.16
HDAC6-233ENST00000489352 DNMBPQ6XZF7 1577 aa22.33■■□□□ 1.16
HDAC6-233ENST00000489352 CLASP1Q7Z460 1538 aa22.32■■□□□ 1.16
HDAC6-233ENST00000489352 CHMP7Q8WUX9 453 aaPredicted RBP22.32■■□□□ 1.16
HDAC6-233ENST00000489352 GAPVD1Q14C86 1478 aa22.23■■□□□ 1.15
HDAC6-233ENST00000489352 SNAPC4Q5SXM2 1469 aa22.22■■□□□ 1.15
HDAC6-233ENST00000489352 TDRD9Q8NDG6 1382 aaKnown RBP22.19■■□□□ 1.14
HDAC6-233ENST00000489352 POLA1P09884 1462 aaPredicted RBP22.17■■□□□ 1.14
HDAC6-233ENST00000489352 CCDC88BA6NC98 1476 aa22.12■■□□□ 1.13
HDAC6-233ENST00000489352 MAGI1Q96QZ7 1491 aaPredicted RBP22.12■■□□□ 1.13
HDAC6-233ENST00000489352 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
HDAC6-233ENST00000489352 SOGA1O94964 1423 aa22.12■■□□□ 1.13
HDAC6-233ENST00000489352 WDR97A6NE52 1622 aa22.08■■□□□ 1.13
HDAC6-233ENST00000489352 KIF13AQ9H1H9 1805 aa22.06■■□□□ 1.12
HDAC6-233ENST00000489352 SYNJ2O15056 1496 aa22.06■■□□□ 1.12
HDAC6-233ENST00000489352 GRIN2BQ13224 1484 aa22.03■■□□□ 1.12
HDAC6-233ENST00000489352 KDM4FA0A1W2PPD8 638 aa21.99■■□□□ 1.11
HDAC6-233ENST00000489352 PBRM1Q86U86 1689 aa21.91■■□□□ 1.1
HDAC6-233ENST00000489352 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
HDAC6-233ENST00000489352 FGD5Q6ZNL6 1462 aa21.9■■□□□ 1.1
HDAC6-233ENST00000489352 FAM69CQ0P6D2 419 aa21.87■■□□□ 1.09
HDAC6-233ENST00000489352 KDM6BO15054 1643 aa21.83■■□□□ 1.08
HDAC6-233ENST00000489352 CEP170Q5SW79 1584 aa21.82■■□□□ 1.08
HDAC6-233ENST00000489352 NPM1P06748 294 aaKnown RBP eCLIP21.8■■□□□ 1.08
HDAC6-233ENST00000489352 ABCC10Q5T3U5 1492 aa21.75■■□□□ 1.07
HDAC6-233ENST00000489352 TSPOAP1O95153 1857 aa21.74■■□□□ 1.07
HDAC6-233ENST00000489352 GRIN2AQ12879 1464 aa21.71■■□□□ 1.07
HDAC6-233ENST00000489352 CUX1P39880 1505 aa21.69■■□□□ 1.06
HDAC6-233ENST00000489352 SHROOM2Q13796 1616 aa21.68■■□□□ 1.06
HDAC6-233ENST00000489352 DIP2BQ9P265 1576 aa21.66■■□□□ 1.06
HDAC6-233ENST00000489352 HECW2Q9P2P5 1572 aa21.65■■□□□ 1.06
HDAC6-233ENST00000489352 ABCA5Q8WWZ7 1642 aa21.64■■□□□ 1.05
HDAC6-233ENST00000489352 NUP160Q12769 1436 aa21.63■■□□□ 1.05
HDAC6-233ENST00000489352 MAPKBP1O60336 1514 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms