RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 ZNF777Q9ULD5 760 aaPredicted RBP14.46□□□□□ -0.09
HDAC6-232ENST00000489053 POGZQ7Z3K3 1410 aa14.45□□□□□ -0.1
HDAC6-232ENST00000489053 CCNB3Q8WWL7 1395 aa14.44□□□□□ -0.1
HDAC6-232ENST00000489053 ZFYVE16Q7Z3T8 1539 aa14.43□□□□□ -0.1
HDAC6-232ENST00000489053 ZNF518AQ6AHZ1 1483 aa14.43□□□□□ -0.1
HDAC6-232ENST00000489053 MAGI2Q86UL8 1455 aa14.43□□□□□ -0.1
HDAC6-232ENST00000489053 FRMPD1Q5SYB0 1578 aa14.43□□□□□ -0.1
HDAC6-232ENST00000489053 ARHGEF40Q8TER5 1519 aa14.42□□□□□ -0.1
HDAC6-232ENST00000489053 CFDP1Q9UEE9 299 aaPredicted RBP14.42□□□□□ -0.1
HDAC6-232ENST00000489053 LRRIQ1Q96JM4 1722 aa14.41□□□□□ -0.1
HDAC6-232ENST00000489053 APLP2Q06481 763 aa14.41□□□□□ -0.1
HDAC6-232ENST00000489053 AFAP1Q8N556 730 aa14.4□□□□□ -0.1
HDAC6-232ENST00000489053 ZMYM4Q5VZL5 1548 aa14.4□□□□□ -0.1
HDAC6-232ENST00000489053 RICTORQ6R327 1708 aa14.39□□□□□ -0.11
HDAC6-232ENST00000489053 MLECQ14165 292 aa14.39□□□□□ -0.11
HDAC6-232ENST00000489053 YEATS2Q9ULM3 1422 aa14.38□□□□□ -0.11
HDAC6-232ENST00000489053 PREX2Q70Z35 1606 aa14.37□□□□□ -0.11
HDAC6-232ENST00000489053 EHBP1L1Q8N3D4 1523 aa14.37□□□□□ -0.11
HDAC6-232ENST00000489053 PLPPR3Q6T4P5 718 aa14.37□□□□□ -0.11
HDAC6-232ENST00000489053 VPS8Q8N3P4 1428 aa14.37□□□□□ -0.11
HDAC6-232ENST00000489053 ATP10AO60312 1499 aa14.36□□□□□ -0.11
HDAC6-232ENST00000489053 C9orf84Q5VXU9 1444 aa14.35□□□□□ -0.11
HDAC6-232ENST00000489053 ESF1Q9H501 851 aaKnown RBP14.35□□□□□ -0.11
HDAC6-232ENST00000489053 PLEKHH2Q8IVE3 1493 aa14.35□□□□□ -0.11
HDAC6-232ENST00000489053 GPATCH8Q9UKJ3 1502 aaKnown RBP14.35□□□□□ -0.11
HDAC6-232ENST00000489053 ABCC1P33527 1531 aa14.34□□□□□ -0.11
HDAC6-232ENST00000489053 SPAG9O60271 1321 aaKnown RBP14.33□□□□□ -0.12
HDAC6-232ENST00000489053 CDC42BPBQ9Y5S2 1711 aa14.32□□□□□ -0.12
HDAC6-232ENST00000489053 HNRNPMP52272 730 aaKnown RBP eCLIP14.32□□□□□ -0.12
HDAC6-232ENST00000489053 TRAPPC8Q9Y2L5 1435 aa14.32□□□□□ -0.12
HDAC6-232ENST00000489053 PTPRMP28827 1452 aa14.31□□□□□ -0.12
HDAC6-232ENST00000489053 HECW2Q9P2P5 1572 aa14.31□□□□□ -0.12
HDAC6-232ENST00000489053 CDC42BPAQ5VT25 1732 aa14.3□□□□□ -0.12
HDAC6-232ENST00000489053 MLH3Q9UHC1 1453 aa14.3□□□□□ -0.12
HDAC6-232ENST00000489053 SYCP2Q9BX26 1530 aa14.3□□□□□ -0.12
HDAC6-232ENST00000489053 KDM5CP41229 1560 aa14.3□□□□□ -0.12
HDAC6-232ENST00000489053 BCORL1Q5H9F3 1711 aa14.29□□□□□ -0.12
HDAC6-232ENST00000489053 KIAA1107Q9UPP5 1409 aa14.29□□□□□ -0.12
HDAC6-232ENST00000489053 TIAM1Q13009 1591 aa14.29□□□□□ -0.12
HDAC6-232ENST00000489053 MADDQ8WXG6 1647 aa14.29□□□□□ -0.12
HDAC6-232ENST00000489053 ADAMTSL3P82987 1691 aa14.28□□□□□ -0.12
HDAC6-232ENST00000489053 NCOA2Q15596 1464 aa14.28□□□□□ -0.12
HDAC6-232ENST00000489053 SUPT6HQ7KZ85 1726 aaKnown RBP14.27□□□□□ -0.12
HDAC6-232ENST00000489053 ITSN2Q9NZM3 1697 aa14.27□□□□□ -0.12
HDAC6-232ENST00000489053 ARHGEF12Q9NZN5 1544 aa14.27□□□□□ -0.12
HDAC6-232ENST00000489053 SAMD9LQ8IVG5 1584 aa14.26□□□□□ -0.13
HDAC6-232ENST00000489053 LRRC9Q6ZRR7 1453 aa14.25□□□□□ -0.13
HDAC6-232ENST00000489053 ZNF644Q9H582 1327 aaPredicted RBP14.25□□□□□ -0.13
HDAC6-232ENST00000489053 DIP2CQ9Y2E4 1556 aa14.25□□□□□ -0.13
HDAC6-232ENST00000489053 RIMS1Q86UR5 1692 aaKnown RBP14.24□□□□□ -0.13
HDAC6-232ENST00000489053 TSPY4P0CV99 314 aa14.23□□□□□ -0.13
HDAC6-232ENST00000489053 TSPY10P0CW01 314 aa14.23□□□□□ -0.13
HDAC6-232ENST00000489053 RSPH4AQ5TD94 716 aa14.23□□□□□ -0.13
HDAC6-232ENST00000489053 MAP3K1Q13233 1512 aa14.22□□□□□ -0.13
HDAC6-232ENST00000489053 ABCA6Q8N139 1617 aa14.22□□□□□ -0.13
HDAC6-232ENST00000489053 ATP7AQ04656 1500 aa14.21□□□□□ -0.13
HDAC6-232ENST00000489053 KANK4Q5T7N3 995 aaPredicted RBP14.21□□□□□ -0.13
HDAC6-232ENST00000489053 CAMSAP2Q08AD1 1489 aa14.2□□□□□ -0.14
HDAC6-232ENST00000489053 REREQ9P2R6 1566 aa14.2□□□□□ -0.14
HDAC6-232ENST00000489053 FER1L4A9Z1Z3 1794 aa14.19□□□□□ -0.14
HDAC6-232ENST00000489053 CCDC141Q6ZP82 1450 aa14.19□□□□□ -0.14
HDAC6-232ENST00000489053 AGLP35573 1532 aa14.18□□□□□ -0.14
HDAC6-232ENST00000489053 A2MP01023 1474 aa14.18□□□□□ -0.14
HDAC6-232ENST00000489053 KIDINS220Q9ULH0 1771 aa14.17□□□□□ -0.14
HDAC6-232ENST00000489053 CEBPAP49715 358 aaPredicted RBP14.17□□□□□ -0.14
HDAC6-232ENST00000489053 GGT6Q6P531 493 aa14.17□□□□□ -0.14
HDAC6-232ENST00000489053 MYOM3Q5VTT5 1437 aa14.16□□□□□ -0.14
HDAC6-232ENST00000489053 CNTLNQ9NXG0 1405 aa14.16□□□□□ -0.14
HDAC6-232ENST00000489053 RTEL1-TNFRSF6BF6WH68 1400 aa14.15□□□□□ -0.14
HDAC6-232ENST00000489053 SIGLEC1Q9BZZ2 1709 aa14.15□□□□□ -0.14
HDAC6-232ENST00000489053 INO80Q9ULG1 1556 aaPredicted RBP14.15□□□□□ -0.14
HDAC6-232ENST00000489053 MBD5Q9P267 1494 aa14.15□□□□□ -0.14
HDAC6-232ENST00000489053 MIA2Q96PC5 1412 aa14.14□□□□□ -0.15
HDAC6-232ENST00000489053 HSPA2P54652 639 aa14.12□□□□□ -0.15
HDAC6-232ENST00000489053 UHRF1BP1Q6BDS2 1440 aa14.12□□□□□ -0.15
HDAC6-232ENST00000489053 DHX29Q7Z478 1369 aaKnown RBP14.11□□□□□ -0.15
HDAC6-232ENST00000489053 KIF3BO15066 747 aa14.11□□□□□ -0.15
HDAC6-232ENST00000489053 PPP6R1Q9UPN7 881 aa14.11□□□□□ -0.15
HDAC6-232ENST00000489053 LMTK3Q96Q04 1460 aa14.11□□□□□ -0.15
HDAC6-232ENST00000489053 ARHGEF5Q12774 1597 aa14.1□□□□□ -0.15
HDAC6-232ENST00000489053 ADGBQ8N7X0 1667 aa14.1□□□□□ -0.15
HDAC6-232ENST00000489053 FAM50AQ14320 339 aaKnown RBP14.08□□□□□ -0.16
HDAC6-232ENST00000489053 PLXNC1O60486 1568 aa14.08□□□□□ -0.16
HDAC6-232ENST00000489053 WASHC2CQ9Y4E1 1318 aa14.07□□□□□ -0.16
HDAC6-232ENST00000489053 ZMYM3Q14202 1370 aa14.07□□□□□ -0.16
HDAC6-232ENST00000489053 FGD6Q6ZV73 1430 aa14.06□□□□□ -0.16
HDAC6-232ENST00000489053 DMRT2Q9Y5R5 561 aa14.05□□□□□ -0.16
HDAC6-232ENST00000489053 NPATQ14207 1427 aa14.04□□□□□ -0.16
HDAC6-232ENST00000489053 PREX1Q8TCU6 1659 aa14.04□□□□□ -0.16
HDAC6-232ENST00000489053 PTPN23Q9H3S7 1636 aa14.03□□□□□ -0.16
HDAC6-232ENST00000489053 C3P01024 1663 aa14.02□□□□□ -0.16
HDAC6-232ENST00000489053 KIF15Q9NS87 1388 aa14.02□□□□□ -0.17
HDAC6-232ENST00000489053 RRP7BPQ9NSQ0 103 aa14.02□□□□□ -0.17
HDAC6-232ENST00000489053 CHIC2Q9UKJ5 165 aa14.02□□□□□ -0.17
HDAC6-232ENST00000489053 MROH2AA6NES4 1674 aa14.01□□□□□ -0.17
HDAC6-232ENST00000489053 CLTCQ00610 1675 aaKnown RBP14.01□□□□□ -0.17
HDAC6-232ENST00000489053 MAST1Q9Y2H9 1570 aa14□□□□□ -0.17
HDAC6-232ENST00000489053 SHANK2Q9UPX8 1470 aa14□□□□□ -0.17
HDAC6-232ENST00000489053 ANKRD30AQ9BXX3 1397 aa14□□□□□ -0.17
HDAC6-232ENST00000489053 KDM5DQ9BY66 1539 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms