RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 NISCHQ9Y2I1 1504 aa22.07■■□□□ 1.12
HDAC6-232ENST00000489053 CCDC180Q9P1Z9 1646 aa19.66■□□□□ 0.74
HDAC6-232ENST00000489053 ABCC9O60706 1549 aa19.51■□□□□ 0.71
HDAC6-232ENST00000489053 DCAF8L2P0C7V8 631 aa18.75■□□□□ 0.59
HDAC6-232ENST00000489053 RB1CC1Q8TDY2 1594 aa18.68■□□□□ 0.58
HDAC6-232ENST00000489053 NACADO15069 1562 aa18.59■□□□□ 0.57
HDAC6-232ENST00000489053 MYO15BQ96JP2 1530 aa18.37■□□□□ 0.53
HDAC6-232ENST00000489053 ZCCHC6Q5VYS8 1495 aaKnown RBP18.34■□□□□ 0.53
HDAC6-232ENST00000489053 PABPN1Q86U42 306 aaKnown RBP eCLIP18.24■□□□□ 0.511e-10■■■■□ 21.1
HDAC6-232ENST00000489053 DCAF1Q9Y4B6 1507 aa18.23■□□□□ 0.51
HDAC6-232ENST00000489053 UNC13AQ9UPW8 1703 aa18.05■□□□□ 0.48
HDAC6-232ENST00000489053 SCRIBQ14160 1630 aa18.01■□□□□ 0.47
HDAC6-232ENST00000489053 BICRAQ9NZM4 1560 aa17.98■□□□□ 0.47
HDAC6-232ENST00000489053 DNAJC5BQ9UF47 199 aa17.96■□□□□ 0.47
HDAC6-232ENST00000489053 SHROOM4Q9ULL8 1493 aa17.89■□□□□ 0.45
HDAC6-232ENST00000489053 EIF4G1Q04637 1599 aaKnown RBP17.61■□□□□ 0.41
HDAC6-232ENST00000489053 CC2D2AQ9P2K1 1620 aa17.57■□□□□ 0.4
HDAC6-232ENST00000489053 CECR2Q9BXF3 1484 aa17.56■□□□□ 0.4
HDAC6-232ENST00000489053 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-232ENST00000489053 SMARCA4P51532 1647 aa17.16■□□□□ 0.34
HDAC6-232ENST00000489053 SMARCA2P51531 1590 aa17.15■□□□□ 0.34
HDAC6-232ENST00000489053 NCAPD3P42695 1498 aa17.13■□□□□ 0.33
HDAC6-232ENST00000489053 ATAD2BQ9ULI0 1458 aa17.13■□□□□ 0.33
HDAC6-232ENST00000489053 BAZ1BQ9UIG0 1483 aaKnown RBP17.05■□□□□ 0.32
HDAC6-232ENST00000489053 HMGXB3Q12766 1538 aa17.04■□□□□ 0.32
HDAC6-232ENST00000489053 MROH2BQ7Z745 1585 aa16.99■□□□□ 0.31
HDAC6-232ENST00000489053 PEG3Q9GZU2 1588 aa16.95■□□□□ 0.3
HDAC6-232ENST00000489053 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
HDAC6-232ENST00000489053 WIZO95785 1651 aa16.78■□□□□ 0.28
HDAC6-232ENST00000489053 RSF1Q96T23 1441 aaPredicted RBP16.78■□□□□ 0.28
HDAC6-232ENST00000489053 NESP48681 1621 aa16.77■□□□□ 0.27
HDAC6-232ENST00000489053 LAMC3Q9Y6N6 1575 aa16.72■□□□□ 0.27
HDAC6-232ENST00000489053 PDS5BQ9NTI5 1447 aa16.71■□□□□ 0.27
HDAC6-232ENST00000489053 CUX2O14529 1486 aa16.7■□□□□ 0.26
HDAC6-232ENST00000489053 CADPSQ9ULU8 1353 aa16.68■□□□□ 0.26
HDAC6-232ENST00000489053 TOP2AP11388 1531 aaKnown RBP16.65■□□□□ 0.26
HDAC6-232ENST00000489053 KIF21AQ7Z4S6 1674 aa16.53■□□□□ 0.24
HDAC6-232ENST00000489053 CEP164Q9UPV0 1460 aa16.51■□□□□ 0.23
HDAC6-232ENST00000489053 THOC2Q8NI27 1593 aaKnown RBP16.51■□□□□ 0.23
HDAC6-232ENST00000489053 CFTRP13569 1480 aa16.5■□□□□ 0.23
HDAC6-232ENST00000489053 MRC2Q9UBG0 1479 aa16.5■□□□□ 0.23
HDAC6-232ENST00000489053 FANCD2Q9BXW9 1451 aa16.49■□□□□ 0.23
HDAC6-232ENST00000489053 CCDC88BA6NC98 1476 aa16.46■□□□□ 0.23
HDAC6-232ENST00000489053 WDR62O43379 1518 aa16.4■□□□□ 0.22
HDAC6-232ENST00000489053 SUPT5HO00267 1087 aaKnown RBP16.39■□□□□ 0.21
HDAC6-232ENST00000489053 DNAJC5Q9H3Z4 198 aa16.38■□□□□ 0.21
HDAC6-232ENST00000489053 URB2Q14146 1524 aaKnown RBP16.28■□□□□ 0.2
HDAC6-232ENST00000489053 PRDM2Q13029 1718 aa16.27■□□□□ 0.19
HDAC6-232ENST00000489053 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
HDAC6-232ENST00000489053 TOPBP1Q92547 1522 aa16.18■□□□□ 0.18
HDAC6-232ENST00000489053 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
HDAC6-232ENST00000489053 DNMBPQ6XZF7 1577 aa16.15■□□□□ 0.18
HDAC6-232ENST00000489053 OSCARQ8IYS5 282 aa16.06■□□□□ 0.16
HDAC6-232ENST00000489053 ZNF608Q9ULD9 1512 aaPredicted RBP16.04■□□□□ 0.16
HDAC6-232ENST00000489053 POLA1P09884 1462 aaPredicted RBP16.03■□□□□ 0.16
HDAC6-232ENST00000489053 SOGA1O94964 1423 aa16.02■□□□□ 0.15
HDAC6-232ENST00000489053 FGD5Q6ZNL6 1462 aa15.98■□□□□ 0.15
HDAC6-232ENST00000489053 AQRO60306 1485 aaKnown RBP eCLIP15.97■□□□□ 0.15
HDAC6-232ENST00000489053 RAD54L2Q9Y4B4 1467 aa15.97■□□□□ 0.15
HDAC6-232ENST00000489053 EIF4G3O43432 1585 aaKnown RBP15.97■□□□□ 0.15
HDAC6-232ENST00000489053 FBLN2P98095 1184 aa15.97■□□□□ 0.15
HDAC6-232ENST00000489053 CUX1P39880 1505 aa15.96■□□□□ 0.15
HDAC6-232ENST00000489053 TDRD9Q8NDG6 1382 aaKnown RBP15.95■□□□□ 0.14
HDAC6-232ENST00000489053 TARBP1Q13395 1621 aaKnown RBP15.94■□□□□ 0.14
HDAC6-232ENST00000489053 TRIM41Q8WV44 630 aa15.91■□□□□ 0.14
HDAC6-232ENST00000489053 WRNQ14191 1432 aaPredicted RBP eCLIP15.89■□□□□ 0.13
HDAC6-232ENST00000489053 CHMP7Q8WUX9 453 aaPredicted RBP15.87■□□□□ 0.13
HDAC6-232ENST00000489053 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
HDAC6-232ENST00000489053 GRIN2BQ13224 1484 aa15.84■□□□□ 0.13
HDAC6-232ENST00000489053 SNAPC4Q5SXM2 1469 aa15.83■□□□□ 0.12
HDAC6-232ENST00000489053 GAPVD1Q14C86 1478 aa15.82■□□□□ 0.12
HDAC6-232ENST00000489053 ABCA10Q8WWZ4 1543 aa15.8■□□□□ 0.12
HDAC6-232ENST00000489053 MAGI1Q96QZ7 1491 aaPredicted RBP15.8■□□□□ 0.12
HDAC6-232ENST00000489053 TOP2BQ02880 1626 aa15.79■□□□□ 0.12
HDAC6-232ENST00000489053 SYNJ1O43426 1573 aa15.76■□□□□ 0.11
HDAC6-232ENST00000489053 CHD1O14646 1710 aa15.76■□□□□ 0.11
HDAC6-232ENST00000489053 SYNJ2O15056 1496 aa15.75■□□□□ 0.11
HDAC6-232ENST00000489053 BIVM-ERCC5R4GMW8 1640 aa15.75■□□□□ 0.11
HDAC6-232ENST00000489053 ARHGEF11O15085 1522 aa15.7■□□□□ 0.1
HDAC6-232ENST00000489053 ABCA5Q8WWZ7 1642 aa15.7■□□□□ 0.1
HDAC6-232ENST00000489053 PBRM1Q86U86 1689 aa15.7■□□□□ 0.1
HDAC6-232ENST00000489053 RIMBP3CA6NJZ7 1639 aa15.68■□□□□ 0.1
HDAC6-232ENST00000489053 RIMBP3BA6NNM3 1639 aa15.68■□□□□ 0.1
HDAC6-232ENST00000489053 RIMBP3Q9UFD9 1639 aa15.68■□□□□ 0.1
HDAC6-232ENST00000489053 CYB5RLQ6IPT4 315 aa15.66■□□□□ 0.1
HDAC6-232ENST00000489053 FHAD1B1AJZ9 1412 aa15.64■□□□□ 0.09
HDAC6-232ENST00000489053 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
HDAC6-232ENST00000489053 GRIN2AQ12879 1464 aa15.61■□□□□ 0.09
HDAC6-232ENST00000489053 ADAMTS12P58397 1594 aa15.61■□□□□ 0.09
HDAC6-232ENST00000489053 KIF27Q86VH2 1401 aa15.6■□□□□ 0.09
HDAC6-232ENST00000489053 CLASP1Q7Z460 1538 aa15.6■□□□□ 0.09
HDAC6-232ENST00000489053 ARAP1Q96P48 1450 aa15.55■□□□□ 0.08
HDAC6-232ENST00000489053 NUP160Q12769 1436 aa15.51■□□□□ 0.07
HDAC6-232ENST00000489053 TRHP20396 242 aaPredicted RBP15.49■□□□□ 0.07
HDAC6-232ENST00000489053 CEP170Q5SW79 1584 aa15.49■□□□□ 0.07
HDAC6-232ENST00000489053 IGF1RP08069 1367 aa15.49■□□□□ 0.07
HDAC6-232ENST00000489053 CUL7Q14999 1698 aa15.44■□□□□ 0.06
HDAC6-232ENST00000489053 JPH4Q96JJ6 628 aa15.44■□□□□ 0.06
HDAC6-232ENST00000489053 CARMIL1Q5VZK9 1371 aa15.44■□□□□ 0.06
HDAC6-232ENST00000489053 PRG4Q92954 1404 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms