RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 JPH4Q96JJ6 628 aa11.95□□□□□ -0.5
HDAC3-209ENST00000486618 FAM69CQ0P6D2 419 aa11.94□□□□□ -0.5
HDAC3-209ENST00000486618 ERICH3Q5RHP9 1530 aa11.94□□□□□ -0.5
HDAC3-209ENST00000486618 SPOCK2Q92563 424 aa11.93□□□□□ -0.5
HDAC3-209ENST00000486618 TOP2BQ02880 1626 aa11.93□□□□□ -0.5
HDAC3-209ENST00000486618 SGIP1Q9BQI5 828 aa11.92□□□□□ -0.5
HDAC3-209ENST00000486618 TRPC6Q9Y210 931 aa11.92□□□□□ -0.5
HDAC3-209ENST00000486618 PCDHB13Q9Y5F0 798 aa11.92□□□□□ -0.5
HDAC3-209ENST00000486618 BIVM-ERCC5R4GMW8 1640 aa11.92□□□□□ -0.5
HDAC3-209ENST00000486618 ABCC10Q5T3U5 1492 aa11.91□□□□□ -0.5
HDAC3-209ENST00000486618 PYGBP11216 843 aa11.91□□□□□ -0.5
HDAC3-209ENST00000486618 ASTLQ6HA08 431 aaPredicted RBP11.91□□□□□ -0.5
HDAC3-209ENST00000486618 GSE1Q14687 1217 aa11.9□□□□□ -0.5
HDAC3-209ENST00000486618 SUPT5HO00267 1087 aaKnown RBP11.89□□□□□ -0.51
HDAC3-209ENST00000486618 ATMINO43313 823 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-209ENST00000486618 PELP1Q8IZL8 1130 aaKnown RBP11.88□□□□□ -0.51
HDAC3-209ENST00000486618 MAPKBP1O60336 1514 aa11.87□□□□□ -0.51
HDAC3-209ENST00000486618 IFNL1Q8IU54 200 aa11.87□□□□□ -0.51
HDAC3-209ENST00000486618 BMP2KQ9NSY1 1161 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-209ENST00000486618 TIE1P35590 1138 aa11.85□□□□□ -0.51
HDAC3-209ENST00000486618 DAXXQ9UER7 740 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-209ENST00000486618 ATN1P54259 1190 aaPredicted RBP11.84□□□□□ -0.51
HDAC3-209ENST00000486618 LHX8Q68G74 356 aa11.84□□□□□ -0.51
HDAC3-209ENST00000486618 DIP2BQ9P265 1576 aa11.84□□□□□ -0.51
HDAC3-209ENST00000486618 KDM6BO15054 1643 aa11.83□□□□□ -0.52
HDAC3-209ENST00000486618 RUSC2Q8N2Y8 1516 aa11.83□□□□□ -0.52
HDAC3-209ENST00000486618 KDM4FA0A1W2PPD8 638 aa11.82□□□□□ -0.52
HDAC3-209ENST00000486618 CIZ1Q9ULV3 898 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-209ENST00000486618 ADCY10Q96PN6 1610 aa11.81□□□□□ -0.52
HDAC3-209ENST00000486618 TSPOAP1O95153 1857 aa11.8□□□□□ -0.52
HDAC3-209ENST00000486618 TTLL13PA6NNM8 815 aa11.8□□□□□ -0.52
HDAC3-209ENST00000486618 KIAA0586Q9BVV6 1533 aa11.8□□□□□ -0.52
HDAC3-209ENST00000486618 CHRM1P11229 460 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-209ENST00000486618 SLC39A7Q92504 469 aa11.78□□□□□ -0.52
HDAC3-209ENST00000486618 METRNQ9UJH8 293 aa11.77□□□□□ -0.53
HDAC3-209ENST00000486618 PCDHB8Q9UN66 801 aa11.77□□□□□ -0.53
HDAC3-209ENST00000486618 ILDR1Q86SU0 546 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-209ENST00000486618 PTPRGP23470 1445 aa11.75□□□□□ -0.53
HDAC3-209ENST00000486618 C7P10643 843 aa11.74□□□□□ -0.53
HDAC3-209ENST00000486618 TMEM106CQ9BVX2 250 aa11.74□□□□□ -0.53
HDAC3-209ENST00000486618 IGF1RP08069 1367 aa11.73□□□□□ -0.53
HDAC3-209ENST00000486618 CUL7Q14999 1698 aa11.72□□□□□ -0.53
HDAC3-209ENST00000486618 KIF27Q86VH2 1401 aa11.72□□□□□ -0.53
HDAC3-209ENST00000486618 POTEB2H3BUK9 544 aa11.72□□□□□ -0.53
HDAC3-209ENST00000486618 ZNF467Q7Z7K2 595 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-209ENST00000486618 TRIM35Q9UPQ4 493 aa11.72□□□□□ -0.53
HDAC3-209ENST00000486618 PLB1Q6P1J6 1458 aa11.71□□□□□ -0.53
HDAC3-209ENST00000486618 CARMIL2Q6F5E8 1435 aa11.71□□□□□ -0.53
HDAC3-209ENST00000486618 TTBK1Q5TCY1 1321 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-209ENST00000486618 TNIKQ9UKE5 1360 aa11.7□□□□□ -0.54
HDAC3-209ENST00000486618 ABCC2Q92887 1545 aa11.7□□□□□ -0.54
HDAC3-209ENST00000486618 ASXL2Q76L83 1435 aa11.69□□□□□ -0.54
HDAC3-209ENST00000486618 GLI2P10070 1586 aa11.68□□□□□ -0.54
HDAC3-209ENST00000486618 CARMIL1Q5VZK9 1371 aa11.67□□□□□ -0.54
HDAC3-209ENST00000486618 ADGRL1O94910 1474 aa11.66□□□□□ -0.54
HDAC3-209ENST00000486618 POTEFA5A3E0 1075 aa11.66□□□□□ -0.54
HDAC3-209ENST00000486618 UHRF1BP1LA0JNW5 1464 aa11.65□□□□□ -0.54
HDAC3-209ENST00000486618 PPRC1Q5VV67 1664 aaKnown RBP11.65□□□□□ -0.55
HDAC3-209ENST00000486618 UACAQ9BZF9 1416 aa11.64□□□□□ -0.55
HDAC3-209ENST00000486618 IER5LQ5T953 404 aa11.64□□□□□ -0.55
HDAC3-209ENST00000486618 TEX14Q8IWB6 1497 aa11.63□□□□□ -0.55
HDAC3-209ENST00000486618 PSEN1P49768 467 aa11.62□□□□□ -0.55
HDAC3-209ENST00000486618 COLQQ9Y215 455 aaPredicted RBP11.62□□□□□ -0.55
HDAC3-209ENST00000486618 IQGAP2Q13576 1575 aa11.62□□□□□ -0.55
HDAC3-209ENST00000486618 MYT1Q01538 1121 aa11.61□□□□□ -0.55
HDAC3-209ENST00000486618 EPRSP07814 1512 aaKnown RBP11.6□□□□□ -0.55
HDAC3-209ENST00000486618 SEC24BO95487 1268 aa11.6□□□□□ -0.55
HDAC3-209ENST00000486618 POTEJP0CG39 1038 aa11.6□□□□□ -0.55
HDAC3-209ENST00000486618 OTUD5Q96G74 571 aa11.6□□□□□ -0.55
HDAC3-209ENST00000486618 COL17A1Q9UMD9 1497 aaPredicted RBP11.59□□□□□ -0.55
HDAC3-209ENST00000486618 PDAP1Q13442 181 aaKnown RBP11.59□□□□□ -0.55
HDAC3-209ENST00000486618 MAP3K4Q9Y6R4 1608 aa11.59□□□□□ -0.55
HDAC3-209ENST00000486618 KDM5BQ9UGL1 1544 aa11.59□□□□□ -0.55
HDAC3-209ENST00000486618 HECW2Q9P2P5 1572 aa11.58□□□□□ -0.56
HDAC3-209ENST00000486618 DISP1Q96F81 1524 aa11.56□□□□□ -0.56
HDAC3-209ENST00000486618 IRX5P78411 483 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-209ENST00000486618 RNF25Q96BH1 459 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-209ENST00000486618 ZCCHC11Q5TAX3 1644 aaKnown RBP11.55□□□□□ -0.56
HDAC3-209ENST00000486618 UGGT2Q9NYU1 1516 aa11.54□□□□□ -0.56
HDAC3-209ENST00000486618 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
HDAC3-209ENST00000486618 RTN4Q9NQC3 1192 aaKnown RBP11.53□□□□□ -0.56
HDAC3-209ENST00000486618 WDR7Q9Y4E6 1490 aa11.52□□□□□ -0.56
HDAC3-209ENST00000486618 RAPGEF2Q9Y4G8 1499 aa11.52□□□□□ -0.56
HDAC3-209ENST00000486618 PLCG2P16885 1265 aa11.52□□□□□ -0.57
HDAC3-209ENST00000486618 GOLGA2Q08379 1002 aa11.52□□□□□ -0.57
HDAC3-209ENST00000486618 KIAA0556O60303 1618 aa11.51□□□□□ -0.57
HDAC3-209ENST00000486618 RIOK3O14730 519 aaKnown RBP11.51□□□□□ -0.57
HDAC3-209ENST00000486618 CD109Q6YHK3 1445 aa11.51□□□□□ -0.57
HDAC3-209ENST00000486618 OCEL1Q9H607 264 aa11.5□□□□□ -0.57
HDAC3-209ENST00000486618 MAGI3Q5TCQ9 1506 aa11.5□□□□□ -0.57
HDAC3-209ENST00000486618 MKRN3Q13064 507 aaKnown RBP11.49□□□□□ -0.57
HDAC3-209ENST00000486618 PKD2Q13563 968 aa11.49□□□□□ -0.57
HDAC3-209ENST00000486618 MAMSTRQ6ZN01 415 aa11.49□□□□□ -0.57
HDAC3-209ENST00000486618 KCNH8Q96L42 1107 aa11.49□□□□□ -0.57
HDAC3-209ENST00000486618 CFAP43Q8NDM7 1665 aa11.49□□□□□ -0.57
HDAC3-209ENST00000486618 ECM2O94769 699 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-209ENST00000486618 FAM9AQ8IZU1 332 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-209ENST00000486618 CABP2Q9NPB3 220 aa11.48□□□□□ -0.57
HDAC3-209ENST00000486618 GOLGA3Q08378 1498 aa11.47□□□□□ -0.57
HDAC3-209ENST00000486618 FBXO41Q8TF61 875 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms