RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 AEBP2Q6ZN18 517 aaPredicted RBP24.3■■□□□ 1.48
HDAC3-209ENST00000486618 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
HDAC3-209ENST00000486618 SENP3Q9H4L4 574 aaPredicted RBP20.65■□□□□ 0.9
HDAC3-209ENST00000486618 PHF23Q9BUL5 403 aaPredicted RBP20.52■□□□□ 0.88
HDAC3-209ENST00000486618 FOXD1Q16676 465 aa19.22■□□□□ 0.67
HDAC3-209ENST00000486618 PLPPR3Q6T4P5 718 aa18.79■□□□□ 0.6
HDAC3-209ENST00000486618 PPP6R1Q9UPN7 881 aa18.22■□□□□ 0.51
HDAC3-209ENST00000486618 ADRA2BP18089 450 aa18.17■□□□□ 0.5
HDAC3-209ENST00000486618 PIAS4Q8N2W9 510 aaPredicted RBP18.04■□□□□ 0.48
HDAC3-209ENST00000486618 MSH5O43196 834 aa17.86■□□□□ 0.45
HDAC3-209ENST00000486618 POTEDQ86YR6 584 aa16.93■□□□□ 0.3
HDAC3-209ENST00000486618 NISCHQ9Y2I1 1504 aa16.81■□□□□ 0.28
HDAC3-209ENST00000486618 MAPK8IP2Q13387 824 aaPredicted RBP16.6■□□□□ 0.25
HDAC3-209ENST00000486618 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
HDAC3-209ENST00000486618 PPP4R3CPQ6ZMV5 832 aa16.51■□□□□ 0.23
HDAC3-209ENST00000486618 DMRT2Q9Y5R5 561 aa16.43■□□□□ 0.22
HDAC3-209ENST00000486618 CNKSR2Q8WXI2 1034 aa16.13■□□□□ 0.17
HDAC3-209ENST00000486618 HOXD11P31277 338 aaPredicted RBP15.95■□□□□ 0.14
HDAC3-209ENST00000486618 NCBP3Q53F19 620 aaKnown RBP15.94■□□□□ 0.14
HDAC3-209ENST00000486618 RNF216Q9NWF9 866 aaPredicted RBP15.91■□□□□ 0.14
HDAC3-209ENST00000486618 NPM3O75607 178 aaKnown RBP15.75■□□□□ 0.11
HDAC3-209ENST00000486618 DCAF8L1A6NGE4 600 aa15.73■□□□□ 0.11
HDAC3-209ENST00000486618 KCNA4P22459 653 aa15.73■□□□□ 0.11
HDAC3-209ENST00000486618 ABCC9O60706 1549 aa15.44■□□□□ 0.06
HDAC3-209ENST00000486618 DNAJC5BQ9UF47 199 aa15.34■□□□□ 0.05
HDAC3-209ENST00000486618 RNF39Q9H2S5 420 aa15.28■□□□□ 0.04
HDAC3-209ENST00000486618 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.02
HDAC3-209ENST00000486618 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.18■□□□□ 0.02
HDAC3-209ENST00000486618 CACNB1Q02641 598 aaPredicted RBP15.13■□□□□ 0.01
HDAC3-209ENST00000486618 C1QBPQ07021 282 aaKnown RBP15.05■□□□□ -0
HDAC3-209ENST00000486618 SLC4A2P04920 1241 aa14.97□□□□□ -0.01
HDAC3-209ENST00000486618 U3KPZ7 1027 aaPredicted RBP14.92□□□□□ -0.02
HDAC3-209ENST00000486618 SLC4A1APQ9BWU0 796 aaKnown RBP14.89□□□□□ -0.03
HDAC3-209ENST00000486618 RB1CC1Q8TDY2 1594 aa14.62□□□□□ -0.07
HDAC3-209ENST00000486618 SPINK5Q9NQ38 1064 aaPredicted RBP14.61□□□□□ -0.07
HDAC3-209ENST00000486618 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.57□□□□□ -0.08
HDAC3-209ENST00000486618 HNRNPUL2Q1KMD3 747 aaKnown RBP14.57□□□□□ -0.08
HDAC3-209ENST00000486618 FOXD4L1Q9NU39 408 aa14.57□□□□□ -0.08
HDAC3-209ENST00000486618 MYCNP04198 464 aaPredicted RBP14.56□□□□□ -0.08
HDAC3-209ENST00000486618 CAPN15O75808 1086 aa14.55□□□□□ -0.08
HDAC3-209ENST00000486618 SAMD1Q6SPF0 538 aaPredicted RBP14.51□□□□□ -0.09
HDAC3-209ENST00000486618 APLP2Q06481 763 aa14.49□□□□□ -0.09
HDAC3-209ENST00000486618 ZBTB22O15209 634 aa14.48□□□□□ -0.09
HDAC3-209ENST00000486618 NACADO15069 1562 aa14.46□□□□□ -0.09
HDAC3-209ENST00000486618 DSG3P32926 999 aa14.42□□□□□ -0.1
HDAC3-209ENST00000486618 TRHP20396 242 aaPredicted RBP14.39□□□□□ -0.11
HDAC3-209ENST00000486618 ZNF219Q9P2Y4 722 aaPredicted RBP14.39□□□□□ -0.11
HDAC3-209ENST00000486618 DCAF8L2P0C7V8 631 aa14.36□□□□□ -0.11
HDAC3-209ENST00000486618 PABPN1Q86U42 306 aaKnown RBP eCLIP14.35□□□□□ -0.11
HDAC3-209ENST00000486618 ABCB7O75027 752 aa14.26□□□□□ -0.13
HDAC3-209ENST00000486618 UNC13AQ9UPW8 1703 aa14.24□□□□□ -0.13
HDAC3-209ENST00000486618 ATF5Q9Y2D1 282 aaPredicted RBP14.21□□□□□ -0.13
HDAC3-209ENST00000486618 MYO15BQ96JP2 1530 aa14.17□□□□□ -0.14
HDAC3-209ENST00000486618 BICRAQ9NZM4 1560 aa14.14□□□□□ -0.15
HDAC3-209ENST00000486618 ATXN8OSP0DMR3 200 aa14.08□□□□□ -0.16
HDAC3-209ENST00000486618 POLA2Q14181 598 aa14.08□□□□□ -0.16
HDAC3-209ENST00000486618 CSRNP3Q8WYN3 585 aa14.07□□□□□ -0.16
HDAC3-209ENST00000486618 EHMT2Q96KQ7 1210 aa14.05□□□□□ -0.16
HDAC3-209ENST00000486618 SHROOM4Q9ULL8 1493 aa13.99□□□□□ -0.17
HDAC3-209ENST00000486618 CECR2Q9BXF3 1484 aa13.95□□□□□ -0.18
HDAC3-209ENST00000486618 CC2D2AQ9P2K1 1620 aa13.93□□□□□ -0.18
HDAC3-209ENST00000486618 DCAF1Q9Y4B6 1507 aa13.89□□□□□ -0.19
HDAC3-209ENST00000486618 ZCCHC6Q5VYS8 1495 aaKnown RBP13.87□□□□□ -0.19
HDAC3-209ENST00000486618 EIF4G1Q04637 1599 aaKnown RBP13.84□□□□□ -0.19
HDAC3-209ENST00000486618 ZBTB12Q9Y330 459 aaPredicted RBP13.81□□□□□ -0.2
HDAC3-209ENST00000486618 SCRIBQ14160 1630 aa13.81□□□□□ -0.2
HDAC3-209ENST00000486618 DNAJC5Q9H3Z4 198 aa13.74□□□□□ -0.21
HDAC3-209ENST00000486618 RBM42Q9BTD8 480 aaKnown RBP13.72□□□□□ -0.21
HDAC3-209ENST00000486618 OSCARQ8IYS5 282 aa13.64□□□□□ -0.23
HDAC3-209ENST00000486618 FBLN2P98095 1184 aa13.6□□□□□ -0.23
HDAC3-209ENST00000486618 MKRN4PQ13434 485 aaPredicted RBP13.57□□□□□ -0.24
HDAC3-209ENST00000486618 AKT1S1Q96B36 256 aa13.48□□□□□ -0.25
HDAC3-209ENST00000486618 CUX2O14529 1486 aa13.44□□□□□ -0.26
HDAC3-209ENST00000486618 SPDYE2BA6NHP3 402 aa13.42□□□□□ -0.26
HDAC3-209ENST00000486618 SPDYE6P0CI01 402 aa13.42□□□□□ -0.26
HDAC3-209ENST00000486618 SPDYE2Q495Y8 402 aa13.42□□□□□ -0.26
HDAC3-209ENST00000486618 ERCC6Q03468 1493 aa13.38□□□□□ -0.27
HDAC3-209ENST00000486618 REM2Q8IYK8 340 aaPredicted RBP13.35□□□□□ -0.27
HDAC3-209ENST00000486618 NCAPD3P42695 1498 aa13.35□□□□□ -0.27
HDAC3-209ENST00000486618 POTEHQ6S545 545 aa13.33□□□□□ -0.28
HDAC3-209ENST00000486618 CHRDL2Q6WN34 429 aa13.32□□□□□ -0.28
HDAC3-209ENST00000486618 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
HDAC3-209ENST00000486618 SSUH2Q9Y2M2 353 aa13.29□□□□□ -0.28
HDAC3-209ENST00000486618 ATAD2BQ9ULI0 1458 aa13.25□□□□□ -0.29
HDAC3-209ENST00000486618 SMARCA2P51531 1590 aa13.23□□□□□ -0.29
HDAC3-209ENST00000486618 PITPNM1O00562 1244 aa13.22□□□□□ -0.29
HDAC3-209ENST00000486618 HMGXB3Q12766 1538 aa13.21□□□□□ -0.29
HDAC3-209ENST00000486618 NESP48681 1621 aa13.17□□□□□ -0.3
HDAC3-209ENST00000486618 SMARCA4P51532 1647 aa13.17□□□□□ -0.3
HDAC3-209ENST00000486618 BAZ1BQ9UIG0 1483 aaKnown RBP13.12□□□□□ -0.31
HDAC3-209ENST00000486618 SPDYE1Q8NFV5 336 aaPredicted RBP13.1□□□□□ -0.31
HDAC3-209ENST00000486618 BAZ1AQ9NRL2 1556 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-209ENST00000486618 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
HDAC3-209ENST00000486618 LAMC3Q9Y6N6 1575 aa13.08□□□□□ -0.32
HDAC3-209ENST00000486618 PIP4P2Q8N4L2 257 aa13.08□□□□□ -0.32
HDAC3-209ENST00000486618 SPDYE4A6NLX3 237 aa13.07□□□□□ -0.32
HDAC3-209ENST00000486618 CLEC11AQ9Y240 323 aa13.07□□□□□ -0.32
HDAC3-209ENST00000486618 PDS5BQ9NTI5 1447 aa13.05□□□□□ -0.32
HDAC3-209ENST00000486618 PEG3Q9GZU2 1588 aa13.04□□□□□ -0.32
HDAC3-209ENST00000486618 FXR2P51116 673 aaKnown RBP eCLIP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms