RNA–Protein interactions for RNA: ENST00000477739.1

CMC1-209, Transcript of C-X9-C motif containing 1, humanhuman

TSL 1 (best)

Gene CMC1, Length 3,749 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-209ENST00000477739 EHBP1L1Q8N3D4 1523 aa13.32□□□□□ -0.28
CMC1-209ENST00000477739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.31□□□□□ -0.281e-6■■■□□ 18.6
CMC1-209ENST00000477739 EPRSP07814 1512 aaKnown RBP13.31□□□□□ -0.28
CMC1-209ENST00000477739 SUPT6HQ7KZ85 1726 aaKnown RBP13.3□□□□□ -0.28
CMC1-209ENST00000477739 IQGAP2Q13576 1575 aa13.3□□□□□ -0.28
CMC1-209ENST00000477739 TMC1Q8TDI8 760 aa13.29□□□□□ -0.28
CMC1-209ENST00000477739 MYT1LQ9UL68 1186 aa13.29□□□□□ -0.28
CMC1-209ENST00000477739 PLEKHD1A6NEE1 506 aa13.28□□□□□ -0.28
CMC1-209ENST00000477739 C11orf95C9JLR9 678 aaPredicted RBP13.28□□□□□ -0.28
CMC1-209ENST00000477739 JPH4Q96JJ6 628 aa13.28□□□□□ -0.28
CMC1-209ENST00000477739 LAS1LQ9Y4W2 734 aaKnown RBP13.28□□□□□ -0.28
CMC1-209ENST00000477739 WASHC2AQ641Q2 1341 aa13.28□□□□□ -0.28
CMC1-209ENST00000477739 SAMD9Q5K651 1589 aa13.27□□□□□ -0.28
CMC1-209ENST00000477739 PTPN23Q9H3S7 1636 aa13.27□□□□□ -0.29
CMC1-209ENST00000477739 CCER2I3L3R5 266 aa13.27□□□□□ -0.29
CMC1-209ENST00000477739 IFT140Q96RY7 1462 aa13.26□□□□□ -0.29
CMC1-209ENST00000477739 RTL5Q5HYW3 569 aaPredicted RBP13.26□□□□□ -0.29
CMC1-209ENST00000477739 HECW1Q76N89 1606 aa13.26□□□□□ -0.29
CMC1-209ENST00000477739 TARBP1Q13395 1621 aaKnown RBP13.25□□□□□ -0.29
CMC1-209ENST00000477739 MAGI3Q5TCQ9 1506 aa13.24□□□□□ -0.29
CMC1-209ENST00000477739 UGGT2Q9NYU1 1516 aa13.24□□□□□ -0.29
CMC1-209ENST00000477739 TSPY4P0CV99 314 aa13.24□□□□□ -0.29
CMC1-209ENST00000477739 TSPY10P0CW01 314 aa13.24□□□□□ -0.29
CMC1-209ENST00000477739 SKAP1Q86WV1 359 aa13.23□□□□□ -0.29
CMC1-209ENST00000477739 KIAA0586Q9BVV6 1533 aa13.22□□□□□ -0.29
CMC1-209ENST00000477739 THOC2Q8NI27 1593 aaKnown RBP13.22□□□□□ -0.29
CMC1-209ENST00000477739 PRG4Q92954 1404 aaPredicted RBP13.21□□□□□ -0.29
CMC1-209ENST00000477739 MIA2Q96PC5 1412 aa13.21□□□□□ -0.29
CMC1-209ENST00000477739 PPP4R2Q9NY27 417 aa13.21□□□□□ -0.29
CMC1-209ENST00000477739 CARMIL2Q6F5E8 1435 aa13.21□□□□□ -0.29
CMC1-209ENST00000477739 ARXQ96QS3 562 aa13.21□□□□□ -0.29
CMC1-209ENST00000477739 ADAMTS12P58397 1594 aa13.2□□□□□ -0.3
CMC1-209ENST00000477739 PKD2Q13563 968 aa13.2□□□□□ -0.3
CMC1-209ENST00000477739 ANP32AP39687 249 aaKnown RBP13.2□□□□□ -0.3
CMC1-209ENST00000477739 DEKP35659 375 aaKnown RBP13.2□□□□□ -0.3
CMC1-209ENST00000477739 CC2D1BQ5T0F9 858 aaKnown RBP13.19□□□□□ -0.3
CMC1-209ENST00000477739 PAK3O75914 559 aaPredicted RBP13.19□□□□□ -0.3
CMC1-209ENST00000477739 NBPF8Q3BBV2 869 aa13.19□□□□□ -0.3
CMC1-209ENST00000477739 PRKRIP1Q9H875 184 aaPredicted RBP13.18□□□□□ -0.3
CMC1-209ENST00000477739 GRIN2AQ12879 1464 aa13.18□□□□□ -0.3
CMC1-209ENST00000477739 PBRM1Q86U86 1689 aa13.18□□□□□ -0.3
CMC1-209ENST00000477739 DAPK1P53355 1430 aa13.18□□□□□ -0.3
CMC1-209ENST00000477739 PLB1Q6P1J6 1458 aa13.17□□□□□ -0.3
CMC1-209ENST00000477739 PLIN1O60240 522 aa13.17□□□□□ -0.3
CMC1-209ENST00000477739 CARD11Q9BXL7 1154 aa13.16□□□□□ -0.3
CMC1-209ENST00000477739 HNRNPMP52272 730 aaKnown RBP eCLIP13.15□□□□□ -0.31e-6■■■■■ 33.5
CMC1-209ENST00000477739 ZBTB47Q9UFB7 747 aaPredicted RBP13.15□□□□□ -0.3
CMC1-209ENST00000477739 ABCC5O15440 1437 aa13.15□□□□□ -0.3
CMC1-209ENST00000477739 WDR62O43379 1518 aa13.15□□□□□ -0.3
CMC1-209ENST00000477739 DCAF11Q8TEB1 546 aa13.14□□□□□ -0.31
CMC1-209ENST00000477739 NUP153P49790 1475 aaKnown RBP13.14□□□□□ -0.31
CMC1-209ENST00000477739 TCOF1Q13428 1488 aaKnown RBP13.14□□□□□ -0.31
CMC1-209ENST00000477739 LRRIQ1Q96JM4 1722 aa13.14□□□□□ -0.31
CMC1-209ENST00000477739 ANKRD30AQ9BXX3 1397 aa13.13□□□□□ -0.31
CMC1-209ENST00000477739 TROQ12816 1431 aaPredicted RBP13.13□□□□□ -0.31
CMC1-209ENST00000477739 NUP155O75694 1391 aa13.13□□□□□ -0.31
CMC1-209ENST00000477739 DISP1Q96F81 1524 aa13.13□□□□□ -0.31
CMC1-209ENST00000477739 DAXXQ9UER7 740 aaPredicted RBP13.13□□□□□ -0.31
CMC1-209ENST00000477739 NOP58Q9Y2X3 529 aaKnown RBP13.13□□□□□ -0.31
CMC1-209ENST00000477739 AKNAQ7Z591 1439 aa13.13□□□□□ -0.31
CMC1-209ENST00000477739 SLC4A3P48751 1232 aa13.12□□□□□ -0.31
CMC1-209ENST00000477739 KIF7Q2M1P5 1343 aa13.1□□□□□ -0.31
CMC1-209ENST00000477739 ANKRD30BQ9BXX2 1392 aa13.1□□□□□ -0.31
CMC1-209ENST00000477739 KIAA0556O60303 1618 aa13.1□□□□□ -0.31
CMC1-209ENST00000477739 ROCK1Q13464 1354 aa13.1□□□□□ -0.31
CMC1-209ENST00000477739 ARHGEF11O15085 1522 aa13.1□□□□□ -0.31
CMC1-209ENST00000477739 SYNJ2O15056 1496 aa13.09□□□□□ -0.31
CMC1-209ENST00000477739 KDM6BO15054 1643 aa13.09□□□□□ -0.31
CMC1-209ENST00000477739 EIF4G3O43432 1585 aaKnown RBP13.08□□□□□ -0.32
CMC1-209ENST00000477739 CCDC7Q96M83 1385 aa13.07□□□□□ -0.32
CMC1-209ENST00000477739 MAGI1Q96QZ7 1491 aaPredicted RBP13.07□□□□□ -0.32
CMC1-209ENST00000477739 PTPRGP23470 1445 aa13.07□□□□□ -0.32
CMC1-209ENST00000477739 ST20-MTHFSA0A0A6YYL1 179 aa13.07□□□□□ -0.32
CMC1-209ENST00000477739 EXOC6Q8TAG9 804 aa13.07□□□□□ -0.32
CMC1-209ENST00000477739 RAPGEF6Q8TEU7 1601 aa13.07□□□□□ -0.32
CMC1-209ENST00000477739 RGS3P49796 1198 aa13.06□□□□□ -0.32
CMC1-209ENST00000477739 CAMSAP2Q08AD1 1489 aa13.06□□□□□ -0.32
CMC1-209ENST00000477739 ANKRD50Q9ULJ7 1429 aa13.06□□□□□ -0.32
CMC1-209ENST00000477739 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.05□□□□□ -0.32
CMC1-209ENST00000477739 NCOA1Q15788 1441 aa13.05□□□□□ -0.32
CMC1-209ENST00000477739 TNNT2P45379 298 aaPredicted RBP13.05□□□□□ -0.32
CMC1-209ENST00000477739 NEUROD2Q15784 382 aa13.05□□□□□ -0.32
CMC1-209ENST00000477739 GPATCH8Q9UKJ3 1502 aaKnown RBP13.04□□□□□ -0.32
CMC1-209ENST00000477739 CDCA7LQ96GN5 454 aa13.04□□□□□ -0.32
CMC1-209ENST00000477739 CNTLNQ9NXG0 1405 aa13.04□□□□□ -0.32
CMC1-209ENST00000477739 NEFMP07197 916 aa13.03□□□□□ -0.32
CMC1-209ENST00000477739 RPRD2Q5VT52 1461 aaKnown RBP13.03□□□□□ -0.32
CMC1-209ENST00000477739 DENND4BO75064 1496 aaPredicted RBP13.02□□□□□ -0.32
CMC1-209ENST00000477739 EIF5BO60841 1220 aaKnown RBP13.02□□□□□ -0.33
CMC1-209ENST00000477739 USP47Q96K76 1375 aa13.02□□□□□ -0.33
CMC1-209ENST00000477739 CHGAP10645 457 aaKnown RBP13.01□□□□□ -0.33
CMC1-209ENST00000477739 KIF15Q9NS87 1388 aa13.01□□□□□ -0.33
CMC1-209ENST00000477739 KIAA1107Q9UPP5 1409 aa13□□□□□ -0.33
CMC1-209ENST00000477739 C9orf84Q5VXU9 1444 aa13□□□□□ -0.33
CMC1-209ENST00000477739 GCC2Q8IWJ2 1684 aa12.99□□□□□ -0.33
CMC1-209ENST00000477739 CEP170Q5SW79 1584 aa12.99□□□□□ -0.33
CMC1-209ENST00000477739 NUDCQ9Y266 331 aa12.99□□□□□ -0.33
CMC1-209ENST00000477739 DNMT1P26358 1616 aaKnown RBP12.98□□□□□ -0.33
CMC1-209ENST00000477739 ATP10BO94823 1461 aa12.97□□□□□ -0.33
CMC1-209ENST00000477739 CANXP27824 592 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms