RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 ZSWIM6Q9HCJ5 1215 aa10.14□□□□□ -0.79
ECHDC1-215ENST00000475319 PYGBP11216 843 aa10.13□□□□□ -0.79
ECHDC1-215ENST00000475319 PAXIP1Q6ZW49 1069 aaPredicted RBP10.12□□□□□ -0.79
ECHDC1-215ENST00000475319 BOLA1Q9Y3E2 137 aa10.12□□□□□ -0.79
ECHDC1-215ENST00000475319 CFAP44Q96MT7 982 aa10.1□□□□□ -0.79
ECHDC1-215ENST00000475319 IRX2Q9BZI1 471 aaPredicted RBP10.1□□□□□ -0.79
ECHDC1-215ENST00000475319 ECM2O94769 699 aaPredicted RBP10.09□□□□□ -0.79
ECHDC1-215ENST00000475319 SPOCK2Q92563 424 aa10.08□□□□□ -0.8
ECHDC1-215ENST00000475319 RGS20O76081 388 aa10.07□□□□□ -0.8
ECHDC1-215ENST00000475319 KLHL34Q8N239 644 aa10.07□□□□□ -0.8
ECHDC1-215ENST00000475319 LSM11P83369 360 aaKnown RBP eCLIP10.07□□□□□ -0.8
ECHDC1-215ENST00000475319 ERICH6Q7L0X2 663 aa10.07□□□□□ -0.8
ECHDC1-215ENST00000475319 ZNF467Q7Z7K2 595 aaPredicted RBP10.06□□□□□ -0.8
ECHDC1-215ENST00000475319 ILDR1Q86SU0 546 aaPredicted RBP10.04□□□□□ -0.8
ECHDC1-215ENST00000475319 DPY19L2Q6NUT2 758 aa10.03□□□□□ -0.8
ECHDC1-215ENST00000475319 RGL2O15211 777 aa10□□□□□ -0.81
ECHDC1-215ENST00000475319 GPR153Q6NV75 609 aa9.99□□□□□ -0.81
ECHDC1-215ENST00000475319 TSHZ2Q9NRE2 1034 aa9.98□□□□□ -0.81
ECHDC1-215ENST00000475319 SPRYD3Q8NCJ5 442 aa9.97□□□□□ -0.81
ECHDC1-215ENST00000475319 PSEN1P49768 467 aa9.96□□□□□ -0.82
ECHDC1-215ENST00000475319 PBX2P40425 430 aa9.95□□□□□ -0.82
ECHDC1-215ENST00000475319 ZNF316A6NFI3 1004 aaPredicted RBP9.92□□□□□ -0.82
ECHDC1-215ENST00000475319 CHGAP10645 457 aaKnown RBP9.88□□□□□ -0.83
ECHDC1-215ENST00000475319 ARSIQ5FYB1 569 aa9.87□□□□□ -0.83
ECHDC1-215ENST00000475319 GSE1Q14687 1217 aa9.83□□□□□ -0.84
ECHDC1-215ENST00000475319 CHRM1P11229 460 aaPredicted RBP9.82□□□□□ -0.84
ECHDC1-215ENST00000475319 PDAP1Q13442 181 aaKnown RBP9.82□□□□□ -0.84
ECHDC1-215ENST00000475319 NBR1Q14596 966 aa9.82□□□□□ -0.84
ECHDC1-215ENST00000475319 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
ECHDC1-215ENST00000475319 CIZ1Q9ULV3 898 aaPredicted RBP9.82□□□□□ -0.84
ECHDC1-215ENST00000475319 IFFO2Q5TF58 517 aa9.81□□□□□ -0.84
ECHDC1-215ENST00000475319 Q6ZNB5 142 aa9.81□□□□□ -0.84
ECHDC1-215ENST00000475319 DNAJC5Q9H3Z4 198 aa9.81□□□□□ -0.84
ECHDC1-215ENST00000475319 ADGRD1Q6QNK2 874 aa9.77□□□□□ -0.85
ECHDC1-215ENST00000475319 AXIN2Q9Y2T1 843 aa9.75□□□□□ -0.85
ECHDC1-215ENST00000475319 TMEM92Q6UXU6 159 aa9.74□□□□□ -0.85
ECHDC1-215ENST00000475319 HS6ST3Q8IZP7 471 aa9.74□□□□□ -0.85
ECHDC1-215ENST00000475319 DAXXQ9UER7 740 aaPredicted RBP9.74□□□□□ -0.85
ECHDC1-215ENST00000475319 TIMELESSQ9UNS1 1208 aa9.74□□□□□ -0.85
ECHDC1-215ENST00000475319 STAC3Q96MF2 364 aa9.73□□□□□ -0.85
ECHDC1-215ENST00000475319 A0A0G2JS52 829 aa9.72□□□□□ -0.85
ECHDC1-215ENST00000475319 KHSRPQ92945 711 aaKnown RBP eCLIP9.72□□□□□ -0.852e-12■■■□□ 17
ECHDC1-215ENST00000475319 MICALL2Q8IY33 904 aa9.72□□□□□ -0.85
ECHDC1-215ENST00000475319 KCTD12Q96CX2 325 aaKnown RBP9.72□□□□□ -0.85
ECHDC1-215ENST00000475319 TULP1O00294 542 aaPredicted RBP9.71□□□□□ -0.86
ECHDC1-215ENST00000475319 TK2O00142 265 aa9.69□□□□□ -0.86
ECHDC1-215ENST00000475319 POTEEQ6S8J3 1075 aa9.69□□□□□ -0.86
ECHDC1-215ENST00000475319 ARHGAP33O14559 1287 aa9.68□□□□□ -0.86
ECHDC1-215ENST00000475319 TRIM41Q8WV44 630 aa9.68□□□□□ -0.86
ECHDC1-215ENST00000475319 RNF25Q96BH1 459 aaPredicted RBP9.66□□□□□ -0.86
ECHDC1-215ENST00000475319 GTF3C3Q9Y5Q9 886 aa9.65□□□□□ -0.86
ECHDC1-215ENST00000475319 HRO43593 1189 aa9.63□□□□□ -0.87
ECHDC1-215ENST00000475319 NKX1-1Q15270 411 aaPredicted RBP9.63□□□□□ -0.87
ECHDC1-215ENST00000475319 NUDT7P0C024 238 aa9.62□□□□□ -0.87
ECHDC1-215ENST00000475319 LHX6Q9UPM6 363 aa9.62□□□□□ -0.87
ECHDC1-215ENST00000475319 PTPN5P54829 565 aa9.61□□□□□ -0.87
ECHDC1-215ENST00000475319 GTPBP6O43824 516 aaPredicted RBP9.6□□□□□ -0.87
ECHDC1-215ENST00000475319 LAPTM4AQ15012 233 aa9.6□□□□□ -0.87
ECHDC1-215ENST00000475319 BCL11AQ9H165 835 aa9.6□□□□□ -0.87
ECHDC1-215ENST00000475319 PSDA5PKW4 1024 aaPredicted RBP9.59□□□□□ -0.87
ECHDC1-215ENST00000475319 HRCP23327 699 aa9.59□□□□□ -0.87
ECHDC1-215ENST00000475319 EFCAB3Q8N7B9 438 aa9.57□□□□□ -0.88
ECHDC1-215ENST00000475319 TRAF7Q6Q0C0 670 aa9.56□□□□□ -0.88
ECHDC1-215ENST00000475319 RIOK3O14730 519 aaKnown RBP9.55□□□□□ -0.88
ECHDC1-215ENST00000475319 STK25O00506 426 aa9.51□□□□□ -0.89
ECHDC1-215ENST00000475319 TMEM132AQ24JP5 1023 aa9.5□□□□□ -0.89
ECHDC1-215ENST00000475319 SOX12O15370 315 aa9.49□□□□□ -0.89
ECHDC1-215ENST00000475319 DMRTA1Q5VZB9 504 aa9.49□□□□□ -0.89
ECHDC1-215ENST00000475319 PCDHGA4Q9Y5G9 962 aa9.48□□□□□ -0.89
ECHDC1-215ENST00000475319 ARXQ96QS3 562 aa9.47□□□□□ -0.89
ECHDC1-215ENST00000475319 VGFO15240 615 aaPredicted RBP9.46□□□□□ -0.9
ECHDC1-215ENST00000475319 PSEN2P49810 448 aa9.46□□□□□ -0.9
ECHDC1-215ENST00000475319 SLC34A2O95436 690 aa9.45□□□□□ -0.9
ECHDC1-215ENST00000475319 KCNH8Q96L42 1107 aa9.44□□□□□ -0.9
ECHDC1-215ENST00000475319 THSD4Q6ZMP0 1018 aa9.42□□□□□ -0.9
ECHDC1-215ENST00000475319 ZNF787Q6DD87 383 aa9.41□□□□□ -0.9
ECHDC1-215ENST00000475319 STK24Q9Y6E0 443 aa9.41□□□□□ -0.9
ECHDC1-215ENST00000475319 BCL11BQ9C0K0 894 aaPredicted RBP9.41□□□□□ -0.9
ECHDC1-215ENST00000475319 GOLGA8CPA6NN73 597 aa9.4□□□□□ -0.91
ECHDC1-215ENST00000475319 GFRA3O60609 400 aa9.4□□□□□ -0.91
ECHDC1-215ENST00000475319 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.39□□□□□ -0.91
ECHDC1-215ENST00000475319 LCE2BO14633 110 aa9.39□□□□□ -0.91
ECHDC1-215ENST00000475319 P3H3Q8IVL6 736 aa9.39□□□□□ -0.91
ECHDC1-215ENST00000475319 FAM9AQ8IZU1 332 aaPredicted RBP9.39□□□□□ -0.91
ECHDC1-215ENST00000475319 ZFP91Q96JP5 570 aaPredicted RBP9.39□□□□□ -0.91
ECHDC1-215ENST00000475319 MS4A4AQ96JQ5 239 aa9.39□□□□□ -0.91
ECHDC1-215ENST00000475319 RYDENQ9NUL5 291 aaKnown RBP9.39□□□□□ -0.91
ECHDC1-215ENST00000475319 C14orf37Q86TY3 774 aa9.38□□□□□ -0.91
ECHDC1-215ENST00000475319 CENPBP07199 599 aaPredicted RBP9.36□□□□□ -0.91
ECHDC1-215ENST00000475319 PPP4R3BQ5MIZ7 849 aa9.36□□□□□ -0.91
ECHDC1-215ENST00000475319 ZNF775Q96BV0 537 aaPredicted RBP9.36□□□□□ -0.91
ECHDC1-215ENST00000475319 VPS9D1Q9Y2B5 631 aa9.35□□□□□ -0.91
ECHDC1-215ENST00000475319 EIF5BO60841 1220 aaKnown RBP9.34□□□□□ -0.91
ECHDC1-215ENST00000475319 LMOD2Q6P5Q4 547 aa9.34□□□□□ -0.91
ECHDC1-215ENST00000475319 WNT2BQ93097 391 aa9.34□□□□□ -0.91
ECHDC1-215ENST00000475319 C2orf72A6NCS6 295 aa9.33□□□□□ -0.92
ECHDC1-215ENST00000475319 KIF3CO14782 793 aa9.33□□□□□ -0.92
ECHDC1-215ENST00000475319 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.33□□□□□ -0.92
ECHDC1-215ENST00000475319 KCNV2Q8TDN2 545 aa9.33□□□□□ -0.92
ECHDC1-215ENST00000475319 PHF8Q9UPP1 1060 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms