RNA–Protein interactions for RNA: ENST00000470953.1

VARS-222, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-222ENST00000470953 NCKAP5LQ9HCH0 1330 aa10.74□□□□□ -0.69
VARS-222ENST00000470953 ZFYVE16Q7Z3T8 1539 aa10.74□□□□□ -0.69
VARS-222ENST00000470953 EFCAB5A4FU69 1503 aa10.7□□□□□ -0.7
VARS-222ENST00000470953 DENND4BO75064 1496 aaPredicted RBP10.7□□□□□ -0.7
VARS-222ENST00000470953 C3P01024 1663 aa10.69□□□□□ -0.7
VARS-222ENST00000470953 ZMYM4Q5VZL5 1548 aa10.69□□□□□ -0.7
VARS-222ENST00000470953 FHOD3Q2V2M9 1422 aa10.69□□□□□ -0.7
VARS-222ENST00000470953 IGF1RP08069 1367 aa10.69□□□□□ -0.7
VARS-222ENST00000470953 ABCA8O94911 1581 aa10.66□□□□□ -0.7
VARS-222ENST00000470953 UGGT2Q9NYU1 1516 aa10.64□□□□□ -0.71
VARS-222ENST00000470953 PTPRKQ15262 1439 aa10.64□□□□□ -0.71
VARS-222ENST00000470953 TRAPPC8Q9Y2L5 1435 aa10.64□□□□□ -0.71
VARS-222ENST00000470953 HECW1Q76N89 1606 aa10.63□□□□□ -0.71
VARS-222ENST00000470953 CPS1P31327 1500 aa10.63□□□□□ -0.71
VARS-222ENST00000470953 ARID3CA6NKF2 412 aa10.62□□□□□ -0.71
VARS-222ENST00000470953 MAGI2Q86UL8 1455 aa10.61□□□□□ -0.71
VARS-222ENST00000470953 PPP6R1Q9UPN7 881 aa10.61□□□□□ -0.71
VARS-222ENST00000470953 TCOF1Q13428 1488 aaKnown RBP10.61□□□□□ -0.71
VARS-222ENST00000470953 C9orf84Q5VXU9 1444 aa10.6□□□□□ -0.71
VARS-222ENST00000470953 PKD2Q13563 968 aa10.59□□□□□ -0.71
VARS-222ENST00000470953 ATP10AO60312 1499 aa10.59□□□□□ -0.71
VARS-222ENST00000470953 SETBP1Q9Y6X0 1596 aa10.59□□□□□ -0.71
VARS-222ENST00000470953 PLA2R1Q13018 1463 aa10.57□□□□□ -0.72
VARS-222ENST00000470953 SHANK2Q9UPX8 1470 aa10.57□□□□□ -0.72
VARS-222ENST00000470953 TRIM52Q96A61 297 aa10.57□□□□□ -0.72
VARS-222ENST00000470953 ATP10BO94823 1461 aa10.56□□□□□ -0.72
VARS-222ENST00000470953 RAPGEF2Q9Y4G8 1499 aa10.56□□□□□ -0.72
VARS-222ENST00000470953 CARMIL1Q5VZK9 1371 aa10.56□□□□□ -0.72
VARS-222ENST00000470953 SUPT6HQ7KZ85 1726 aaKnown RBP10.55□□□□□ -0.72
VARS-222ENST00000470953 RBM33Q96EV2 1170 aaKnown RBP10.54□□□□□ -0.72
VARS-222ENST00000470953 CFAP74Q9C0B2 1584 aa10.54□□□□□ -0.72
VARS-222ENST00000470953 LRRC7Q96NW7 1537 aa10.53□□□□□ -0.72
VARS-222ENST00000470953 KIF27Q86VH2 1401 aa10.53□□□□□ -0.72
VARS-222ENST00000470953 ZNF142P52746 1687 aaPredicted RBP10.53□□□□□ -0.72
VARS-222ENST00000470953 VWDEQ8N2E2 1590 aa10.51□□□□□ -0.73
VARS-222ENST00000470953 MYO3AQ8NEV4 1616 aa10.51□□□□□ -0.73
VARS-222ENST00000470953 RNF17Q9BXT8 1623 aaKnown RBP10.51□□□□□ -0.73
VARS-222ENST00000470953 CEP170BQ9Y4F5 1589 aaPredicted RBP10.49□□□□□ -0.73
VARS-222ENST00000470953 NEURL4Q96JN8 1562 aa10.48□□□□□ -0.73
VARS-222ENST00000470953 ZRANB1Q9UGI0 708 aa10.48□□□□□ -0.73
VARS-222ENST00000470953 NPATQ14207 1427 aa10.48□□□□□ -0.73
VARS-222ENST00000470953 ESF1Q9H501 851 aaKnown RBP10.47□□□□□ -0.73
VARS-222ENST00000470953 SUPT5HO00267 1087 aaKnown RBP10.46□□□□□ -0.73
VARS-222ENST00000470953 SCAPERQ9BY12 1400 aa10.46□□□□□ -0.74
VARS-222ENST00000470953 POLR1AO95602 1720 aaPredicted RBP10.45□□□□□ -0.74
VARS-222ENST00000470953 STRCP1A6NGW2 1772 aa10.44□□□□□ -0.74
VARS-222ENST00000470953 AGLP35573 1532 aa10.43□□□□□ -0.74
VARS-222ENST00000470953 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.43□□□□□ -0.74
VARS-222ENST00000470953 DIP2CQ9Y2E4 1556 aa10.43□□□□□ -0.74
VARS-222ENST00000470953 CNTLNQ9NXG0 1405 aa10.41□□□□□ -0.74
VARS-222ENST00000470953 MROH2AA6NES4 1674 aa10.41□□□□□ -0.74
VARS-222ENST00000470953 REREQ9P2R6 1566 aa10.41□□□□□ -0.74
VARS-222ENST00000470953 GOLGA3Q08378 1498 aa10.41□□□□□ -0.74
VARS-222ENST00000470953 CDK12Q9NYV4 1490 aaPredicted RBP10.4□□□□□ -0.74
VARS-222ENST00000470953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.39□□□□□ -0.75
VARS-222ENST00000470953 RXRBP28702 533 aa10.39□□□□□ -0.75
VARS-222ENST00000470953 HNRNPUL2Q1KMD3 747 aaKnown RBP10.39□□□□□ -0.75
VARS-222ENST00000470953 ZNF772Q68DY9 489 aaPredicted RBP10.39□□□□□ -0.75
VARS-222ENST00000470953 DNMT1P26358 1616 aaKnown RBP10.39□□□□□ -0.75
VARS-222ENST00000470953 ABCA6Q8N139 1617 aa10.39□□□□□ -0.75
VARS-222ENST00000470953 RAPGEF6Q8TEU7 1601 aa10.39□□□□□ -0.75
VARS-222ENST00000470953 SYNMO15061 1565 aa10.39□□□□□ -0.75
VARS-222ENST00000470953 ZMYM3Q14202 1370 aa10.39□□□□□ -0.75
VARS-222ENST00000470953 LRP5O75197 1615 aa10.38□□□□□ -0.75
VARS-222ENST00000470953 LRP6O75581 1613 aa10.38□□□□□ -0.75
VARS-222ENST00000470953 FAM135BQ49AJ0 1406 aa10.38□□□□□ -0.75
VARS-222ENST00000470953 YY1P25490 414 aa10.36□□□□□ -0.75
VARS-222ENST00000470953 RGS12O14924 1447 aa10.35□□□□□ -0.75
VARS-222ENST00000470953 FOXD1Q16676 465 aa10.35□□□□□ -0.75
VARS-222ENST00000470953 KDM5CP41229 1560 aa10.35□□□□□ -0.75
VARS-222ENST00000470953 ROBO1Q9Y6N7 1651 aa10.34□□□□□ -0.75
VARS-222ENST00000470953 CDK13Q14004 1512 aaKnown RBP10.34□□□□□ -0.75
VARS-222ENST00000470953 XIRP1Q702N8 1843 aaKnown RBP10.34□□□□□ -0.75
VARS-222ENST00000470953 A2ML1A8K2U0 1454 aa10.34□□□□□ -0.75
VARS-222ENST00000470953 CTTNBP2Q8WZ74 1663 aa10.34□□□□□ -0.75
VARS-222ENST00000470953 SENP3-EIF4A1A0A087X0R7 540 aa10.33□□□□□ -0.76
VARS-222ENST00000470953 P3H3Q8IVL6 736 aa10.33□□□□□ -0.76
VARS-222ENST00000470953 MYT1LQ9UL68 1186 aa10.33□□□□□ -0.76
VARS-222ENST00000470953 CLTCQ00610 1675 aaKnown RBP10.32□□□□□ -0.76
VARS-222ENST00000470953 ZNF518AQ6AHZ1 1483 aa10.32□□□□□ -0.76
VARS-222ENST00000470953 NUTM2BA6NNL0 878 aaPredicted RBP10.32□□□□□ -0.76
VARS-222ENST00000470953 NUTM2EB1AL46 878 aaPredicted RBP10.32□□□□□ -0.76
VARS-222ENST00000470953 NUTM2DQ5VT03 806 aaPredicted RBP10.32□□□□□ -0.76
VARS-222ENST00000470953 NUTM2AQ8IVF1 878 aaPredicted RBP10.32□□□□□ -0.76
VARS-222ENST00000470953 AFAP1Q8N556 730 aa10.32□□□□□ -0.76
VARS-222ENST00000470953 NPHP4O75161 1426 aaPredicted RBP10.32□□□□□ -0.76
VARS-222ENST00000470953 JCADQ9P266 1359 aa10.31□□□□□ -0.76
VARS-222ENST00000470953 MEX3CQ5U5Q3 659 aaKnown RBP10.31□□□□□ -0.76
VARS-222ENST00000470953 PLCH2O75038 1416 aa10.3□□□□□ -0.76
VARS-222ENST00000470953 IQGAP1P46940 1657 aa10.29□□□□□ -0.76
VARS-222ENST00000470953 PHLPP1O60346 1717 aa10.29□□□□□ -0.76
VARS-222ENST00000470953 MED14O60244 1454 aa10.29□□□□□ -0.76
VARS-222ENST00000470953 NUP153P49790 1475 aaKnown RBP10.29□□□□□ -0.76
VARS-222ENST00000470953 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.28□□□□□ -0.76
VARS-222ENST00000470953 PLEKHD1A6NEE1 506 aa10.27□□□□□ -0.77
VARS-222ENST00000470953 ANKLE2Q86XL3 938 aa10.27□□□□□ -0.77
VARS-222ENST00000470953 ATAD2Q6PL18 1390 aa10.26□□□□□ -0.77
VARS-222ENST00000470953 DEPDC5O75140 1603 aa10.26□□□□□ -0.77
VARS-222ENST00000470953 ITSN2Q9NZM3 1697 aa10.26□□□□□ -0.77
VARS-222ENST00000470953 ABCC1P33527 1531 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms