RNA–Protein interactions for RNA: ENST00000470953.1

VARS-222, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-222ENST00000470953 DNAJC5BQ9UF47 199 aa15.59■□□□□ 0.09
VARS-222ENST00000470953 ABCC9O60706 1549 aa15.52■□□□□ 0.07
VARS-222ENST00000470953 NISCHQ9Y2I1 1504 aa15.48■□□□□ 0.07
VARS-222ENST00000470953 DNAJC5Q9H3Z4 198 aa15.05■□□□□ -0
VARS-222ENST00000470953 CCDC180Q9P1Z9 1646 aa14.35□□□□□ -0.11
VARS-222ENST00000470953 PABPN1Q86U42 306 aaKnown RBP eCLIP14.27□□□□□ -0.13
VARS-222ENST00000470953 RB1CC1Q8TDY2 1594 aa14.21□□□□□ -0.14
VARS-222ENST00000470953 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
VARS-222ENST00000470953 TRIM41Q8WV44 630 aa13.97□□□□□ -0.17
VARS-222ENST00000470953 UNC13AQ9UPW8 1703 aa13.95□□□□□ -0.18
VARS-222ENST00000470953 CC2D2AQ9P2K1 1620 aa13.94□□□□□ -0.18
VARS-222ENST00000470953 BICRAQ9NZM4 1560 aa13.91□□□□□ -0.18
VARS-222ENST00000470953 NACADO15069 1562 aa13.82□□□□□ -0.2
VARS-222ENST00000470953 CUX2O14529 1486 aa13.77□□□□□ -0.21
VARS-222ENST00000470953 EIF4G1Q04637 1599 aaKnown RBP13.62□□□□□ -0.23
VARS-222ENST00000470953 DCAF8L2P0C7V8 631 aa13.54□□□□□ -0.24
VARS-222ENST00000470953 SHROOM4Q9ULL8 1493 aa13.48□□□□□ -0.25
VARS-222ENST00000470953 ERCC6Q03468 1493 aa13.43□□□□□ -0.26
VARS-222ENST00000470953 AEBP2Q6ZN18 517 aaPredicted RBP13.39□□□□□ -0.27
VARS-222ENST00000470953 MYO15BQ96JP2 1530 aa13.23□□□□□ -0.29
VARS-222ENST00000470953 ILDR1Q86SU0 546 aaPredicted RBP13.13□□□□□ -0.31
VARS-222ENST00000470953 THOC2Q8NI27 1593 aaKnown RBP13.11□□□□□ -0.31
VARS-222ENST00000470953 SCRIBQ14160 1630 aa13.1□□□□□ -0.31
VARS-222ENST00000470953 NESP48681 1621 aa13.03□□□□□ -0.32
VARS-222ENST00000470953 RIMBP3CA6NJZ7 1639 aa12.97□□□□□ -0.33
VARS-222ENST00000470953 RIMBP3BA6NNM3 1639 aa12.97□□□□□ -0.33
VARS-222ENST00000470953 RIMBP3Q9UFD9 1639 aa12.97□□□□□ -0.33
VARS-222ENST00000470953 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
VARS-222ENST00000470953 TRHP20396 242 aaPredicted RBP12.96□□□□□ -0.33
VARS-222ENST00000470953 SMARCA2P51531 1590 aa12.92□□□□□ -0.34
VARS-222ENST00000470953 OSCARQ8IYS5 282 aa12.92□□□□□ -0.34
VARS-222ENST00000470953 KIF21AQ7Z4S6 1674 aa12.81□□□□□ -0.36
VARS-222ENST00000470953 ARHGEF11O15085 1522 aa12.8□□□□□ -0.36
VARS-222ENST00000470953 NCAPD3P42695 1498 aa12.78□□□□□ -0.36
VARS-222ENST00000470953 CYB5RLQ6IPT4 315 aa12.75□□□□□ -0.37
VARS-222ENST00000470953 LAMC3Q9Y6N6 1575 aa12.68□□□□□ -0.38
VARS-222ENST00000470953 DCAF1Q9Y4B6 1507 aa12.67□□□□□ -0.38
VARS-222ENST00000470953 WDR62O43379 1518 aa12.64□□□□□ -0.39
VARS-222ENST00000470953 MRC2Q9UBG0 1479 aa12.62□□□□□ -0.39
VARS-222ENST00000470953 PDS5BQ9NTI5 1447 aa12.62□□□□□ -0.39
VARS-222ENST00000470953 ARAP1Q96P48 1450 aa12.61□□□□□ -0.39
VARS-222ENST00000470953 ATAD2BQ9ULI0 1458 aa12.61□□□□□ -0.39
VARS-222ENST00000470953 ZCCHC6Q5VYS8 1495 aaKnown RBP12.59□□□□□ -0.39
VARS-222ENST00000470953 HMGXB3Q12766 1538 aa12.59□□□□□ -0.39
VARS-222ENST00000470953 BAZ1BQ9UIG0 1483 aaKnown RBP12.41□□□□□ -0.42
VARS-222ENST00000470953 LMTK3Q96Q04 1460 aa12.36□□□□□ -0.43
VARS-222ENST00000470953 KDM4FA0A1W2PPD8 638 aa12.36□□□□□ -0.43
VARS-222ENST00000470953 CADPSQ9ULU8 1353 aa12.34□□□□□ -0.43
VARS-222ENST00000470953 CEP164Q9UPV0 1460 aa12.34□□□□□ -0.43
VARS-222ENST00000470953 SMARCA4P51532 1647 aa12.33□□□□□ -0.44
VARS-222ENST00000470953 RSF1Q96T23 1441 aaPredicted RBP12.31□□□□□ -0.44
VARS-222ENST00000470953 SOCS7O14512 581 aa12.29□□□□□ -0.44
VARS-222ENST00000470953 FBXO41Q8TF61 875 aa12.29□□□□□ -0.44
VARS-222ENST00000470953 ZNF608Q9ULD9 1512 aaPredicted RBP12.28□□□□□ -0.44
VARS-222ENST00000470953 CHD1O14646 1710 aa12.27□□□□□ -0.45
VARS-222ENST00000470953 ERCC6L2Q5T890 1561 aa12.26□□□□□ -0.45
VARS-222ENST00000470953 ILDR2Q71H61 639 aa12.25□□□□□ -0.45
VARS-222ENST00000470953 URB2Q14146 1524 aaKnown RBP12.23□□□□□ -0.45
VARS-222ENST00000470953 FANCD2Q9BXW9 1451 aa12.23□□□□□ -0.45
VARS-222ENST00000470953 HECW2Q9P2P5 1572 aa12.21□□□□□ -0.46
VARS-222ENST00000470953 PEG3Q9GZU2 1588 aa12.19□□□□□ -0.46
VARS-222ENST00000470953 EIF4G3O43432 1585 aaKnown RBP12.14□□□□□ -0.47
VARS-222ENST00000470953 FBLN2P98095 1184 aa12.12□□□□□ -0.47
VARS-222ENST00000470953 IFT140Q96RY7 1462 aa12.12□□□□□ -0.47
VARS-222ENST00000470953 CLASP1Q7Z460 1538 aa12.09□□□□□ -0.47
VARS-222ENST00000470953 KIF13AQ9H1H9 1805 aa12.09□□□□□ -0.47
VARS-222ENST00000470953 DISP3Q9P2K9 1392 aa12.05□□□□□ -0.48
VARS-222ENST00000470953 GAPVD1Q14C86 1478 aa12.04□□□□□ -0.48
VARS-222ENST00000470953 SYNJ2O15056 1496 aa12.02□□□□□ -0.48
VARS-222ENST00000470953 AQRO60306 1485 aaKnown RBP eCLIP12.01□□□□□ -0.49
VARS-222ENST00000470953 ADGRL1O94910 1474 aa11.99□□□□□ -0.49
VARS-222ENST00000470953 CFTRP13569 1480 aa11.98□□□□□ -0.49
VARS-222ENST00000470953 KDM6BO15054 1643 aa11.97□□□□□ -0.49
VARS-222ENST00000470953 MROH2BQ7Z745 1585 aa11.95□□□□□ -0.5
VARS-222ENST00000470953 SYNJ1O43426 1573 aa11.93□□□□□ -0.5
VARS-222ENST00000470953 TOPBP1Q92547 1522 aa11.88□□□□□ -0.51
VARS-222ENST00000470953 TARBP1Q13395 1621 aaKnown RBP11.88□□□□□ -0.51
VARS-222ENST00000470953 FAM69CQ0P6D2 419 aa11.86□□□□□ -0.51
VARS-222ENST00000470953 SNAPC4Q5SXM2 1469 aa11.85□□□□□ -0.51
VARS-222ENST00000470953 SPATA31D1Q6ZQQ2 1576 aa11.84□□□□□ -0.51
VARS-222ENST00000470953 ABCC10Q5T3U5 1492 aa11.83□□□□□ -0.52
VARS-222ENST00000470953 CHMP7Q8WUX9 453 aaPredicted RBP11.81□□□□□ -0.52
VARS-222ENST00000470953 DIP2BQ9P265 1576 aa11.79□□□□□ -0.52
VARS-222ENST00000470953 PRDM2Q13029 1718 aa11.77□□□□□ -0.52
VARS-222ENST00000470953 TSPOAP1O95153 1857 aa11.77□□□□□ -0.53
VARS-222ENST00000470953 WIZO95785 1651 aa11.77□□□□□ -0.53
VARS-222ENST00000470953 TDRD9Q8NDG6 1382 aaKnown RBP11.75□□□□□ -0.53
VARS-222ENST00000470953 DNMBPQ6XZF7 1577 aa11.72□□□□□ -0.53
VARS-222ENST00000470953 MAGI1Q96QZ7 1491 aaPredicted RBP11.71□□□□□ -0.53
VARS-222ENST00000470953 RAD54L2Q9Y4B4 1467 aa11.7□□□□□ -0.54
VARS-222ENST00000470953 POLA1P09884 1462 aaPredicted RBP11.7□□□□□ -0.54
VARS-222ENST00000470953 ABCC8Q09428 1581 aa11.69□□□□□ -0.54
VARS-222ENST00000470953 CEP170Q5SW79 1584 aa11.67□□□□□ -0.54
VARS-222ENST00000470953 MAPKBP1O60336 1514 aa11.67□□□□□ -0.54
VARS-222ENST00000470953 CERKQ8TCT0 537 aa11.63□□□□□ -0.55
VARS-222ENST00000470953 GRIN2BQ13224 1484 aa11.61□□□□□ -0.55
VARS-222ENST00000470953 TOP2BQ02880 1626 aa11.6□□□□□ -0.55
VARS-222ENST00000470953 WDR97A6NE52 1622 aa11.6□□□□□ -0.55
VARS-222ENST00000470953 SOGA1O94964 1423 aa11.59□□□□□ -0.55
VARS-222ENST00000470953 COL17A1Q9UMD9 1497 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms