RNA–Protein interactions for RNA: ENST00000438862.6

CSTF3-203, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 1 (best) BASIC

Gene CSTF3, Length 1,132 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-203ENST00000438862 FRMPD1Q5SYB0 1578 aa19.33■□□□□ 0.69
CSTF3-203ENST00000438862 ARID3CA6NKF2 412 aa19.33■□□□□ 0.68
CSTF3-203ENST00000438862 POGZQ7Z3K3 1410 aa19.33■□□□□ 0.68
CSTF3-203ENST00000438862 ARHGEF40Q8TER5 1519 aa19.29■□□□□ 0.68
CSTF3-203ENST00000438862 FANCAO15360 1455 aa19.28■□□□□ 0.68
CSTF3-203ENST00000438862 DENND4BO75064 1496 aaPredicted RBP19.28■□□□□ 0.68
CSTF3-203ENST00000438862 AKNAQ7Z591 1439 aa19.25■□□□□ 0.67
CSTF3-203ENST00000438862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.25■□□□□ 0.67
CSTF3-203ENST00000438862 HNRNPUL2Q1KMD3 747 aaKnown RBP19.25■□□□□ 0.67
CSTF3-203ENST00000438862 FHOD3Q2V2M9 1422 aa19.25■□□□□ 0.67
CSTF3-203ENST00000438862 RICTORQ6R327 1708 aa19.23■□□□□ 0.67
CSTF3-203ENST00000438862 P3H3Q8IVL6 736 aa19.23■□□□□ 0.67
CSTF3-203ENST00000438862 YEATS2Q9ULM3 1422 aa19.2■□□□□ 0.66
CSTF3-203ENST00000438862 SPATA31D1Q6ZQQ2 1576 aa19.19■□□□□ 0.66
CSTF3-203ENST00000438862 MAGI2Q86UL8 1455 aa19.18■□□□□ 0.66
CSTF3-203ENST00000438862 PRXQ9BXM0 1461 aa19.18■□□□□ 0.66
CSTF3-203ENST00000438862 MLECQ14165 292 aa19.18■□□□□ 0.66
CSTF3-203ENST00000438862 EFCAB5A4FU69 1503 aa19.18■□□□□ 0.66
CSTF3-203ENST00000438862 TTC37Q6PGP7 1564 aa19.18■□□□□ 0.66
CSTF3-203ENST00000438862 RAPGEF6Q8TEU7 1601 aa19.18■□□□□ 0.66
CSTF3-203ENST00000438862 FER1L4A9Z1Z3 1794 aa19.17■□□□□ 0.66
CSTF3-203ENST00000438862 ZMYM4Q5VZL5 1548 aa19.17■□□□□ 0.66
CSTF3-203ENST00000438862 CFAP74Q9C0B2 1584 aa19.17■□□□□ 0.66
CSTF3-203ENST00000438862 ZFYVE16Q7Z3T8 1539 aa19.16■□□□□ 0.66
CSTF3-203ENST00000438862 PLEKHD1A6NEE1 506 aa19.16■□□□□ 0.66
CSTF3-203ENST00000438862 PREX1Q8TCU6 1659 aa19.16■□□□□ 0.66
CSTF3-203ENST00000438862 SIGLEC1Q9BZZ2 1709 aa19.13■□□□□ 0.65
CSTF3-203ENST00000438862 STRCQ7RTU9 1775 aa19.11■□□□□ 0.65
CSTF3-203ENST00000438862 SAMD9Q5K651 1589 aa19.1■□□□□ 0.65
CSTF3-203ENST00000438862 NUP153P49790 1475 aaKnown RBP19.09■□□□□ 0.65
CSTF3-203ENST00000438862 SETD1BQ9UPS6 1966 aaKnown RBP19.09■□□□□ 0.65
CSTF3-203ENST00000438862 ARHGEF12Q9NZN5 1544 aa19.09■□□□□ 0.65
CSTF3-203ENST00000438862 HECW1Q76N89 1606 aa19.07■□□□□ 0.64
CSTF3-203ENST00000438862 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.07■□□□□ 0.64
CSTF3-203ENST00000438862 CEBPAP49715 358 aaPredicted RBP19.07■□□□□ 0.64
CSTF3-203ENST00000438862 ATP10AO60312 1499 aa19.07■□□□□ 0.64
CSTF3-203ENST00000438862 PTPRTO14522 1441 aa19.07■□□□□ 0.64
CSTF3-203ENST00000438862 UHRF1BP1Q6BDS2 1440 aa19.06■□□□□ 0.64
CSTF3-203ENST00000438862 IQSEC2Q5JU85 1478 aa19.03■□□□□ 0.64
CSTF3-203ENST00000438862 SCAPERQ9BY12 1400 aa19.03■□□□□ 0.64
CSTF3-203ENST00000438862 C9orf84Q5VXU9 1444 aa19.02■□□□□ 0.64
CSTF3-203ENST00000438862 PLCH2O75038 1416 aa18.99■□□□□ 0.63
CSTF3-203ENST00000438862 LTBP4Q8N2S1 1624 aa18.98■□□□□ 0.63
CSTF3-203ENST00000438862 ABCB7O75027 752 aa18.95■□□□□ 0.62
CSTF3-203ENST00000438862 EFCAB2Q5VUJ9 269 aa18.94■□□□□ 0.62
CSTF3-203ENST00000438862 ZNF219Q9P2Y4 722 aaPredicted RBP18.94■□□□□ 0.62
CSTF3-203ENST00000438862 APLP2Q06481 763 aa18.93■□□□□ 0.62
CSTF3-203ENST00000438862 CSRNP3Q8WYN3 585 aa18.91■□□□□ 0.62
CSTF3-203ENST00000438862 ESF1Q9H501 851 aaKnown RBP18.9■□□□□ 0.62
CSTF3-203ENST00000438862 TRAPPC8Q9Y2L5 1435 aa18.9■□□□□ 0.62
CSTF3-203ENST00000438862 RANGAP1P46060 587 aaPredicted RBP18.89■□□□□ 0.61
CSTF3-203ENST00000438862 ZNF518AQ6AHZ1 1483 aa18.89■□□□□ 0.61
CSTF3-203ENST00000438862 C3P01024 1663 aa18.88■□□□□ 0.61
CSTF3-203ENST00000438862 NCOA1Q15788 1441 aa18.87■□□□□ 0.61
CSTF3-203ENST00000438862 UBAP1LF5GYI3 381 aa18.86■□□□□ 0.61
CSTF3-203ENST00000438862 MYT1LQ9UL68 1186 aa18.86■□□□□ 0.61
CSTF3-203ENST00000438862 AFAP1Q8N556 730 aa18.85■□□□□ 0.61
CSTF3-203ENST00000438862 MYO5CQ9NQX4 1742 aa18.85■□□□□ 0.61
CSTF3-203ENST00000438862 REREQ9P2R6 1566 aa18.85■□□□□ 0.61
CSTF3-203ENST00000438862 SAMD1Q6SPF0 538 aaPredicted RBP18.83■□□□□ 0.6
CSTF3-203ENST00000438862 KDM5CP41229 1560 aa18.83■□□□□ 0.6
CSTF3-203ENST00000438862 POTEHQ6S545 545 aa18.82■□□□□ 0.6
CSTF3-203ENST00000438862 CDK11AQ9UQ88 783 aaPredicted RBP18.82■□□□□ 0.6
CSTF3-203ENST00000438862 AGLP35573 1532 aa18.81■□□□□ 0.6
CSTF3-203ENST00000438862 CDK13Q14004 1512 aaKnown RBP18.81■□□□□ 0.6
CSTF3-203ENST00000438862 DIP2CQ9Y2E4 1556 aa18.81■□□□□ 0.6
CSTF3-203ENST00000438862 CNTLNQ9NXG0 1405 aa18.8■□□□□ 0.6
CSTF3-203ENST00000438862 MLH3Q9UHC1 1453 aa18.78■□□□□ 0.6
CSTF3-203ENST00000438862 CAMSAP1Q5T5Y3 1602 aa18.78■□□□□ 0.6
CSTF3-203ENST00000438862 ZNF335Q9H4Z2 1342 aaPredicted RBP18.76■□□□□ 0.59
CSTF3-203ENST00000438862 NPATQ14207 1427 aa18.75■□□□□ 0.59
CSTF3-203ENST00000438862 ARHGAP5Q13017 1502 aa18.75■□□□□ 0.59
CSTF3-203ENST00000438862 NCKAP5LQ9HCH0 1330 aa18.74■□□□□ 0.59
CSTF3-203ENST00000438862 PKD2Q13563 968 aa18.74■□□□□ 0.59
CSTF3-203ENST00000438862 ABCA6Q8N139 1617 aa18.74■□□□□ 0.59
CSTF3-203ENST00000438862 ATP1B4Q9UN42 357 aaPredicted RBP18.73■□□□□ 0.59
CSTF3-203ENST00000438862 KIF14Q15058 1648 aa18.71■□□□□ 0.59
CSTF3-203ENST00000438862 MROH2AA6NES4 1674 aa18.69■□□□□ 0.58
CSTF3-203ENST00000438862 ZMYM3Q14202 1370 aa18.69■□□□□ 0.58
CSTF3-203ENST00000438862 MED1Q15648 1581 aaPredicted RBP18.69■□□□□ 0.58
CSTF3-203ENST00000438862 EEA1Q15075 1411 aa18.69■□□□□ 0.58
CSTF3-203ENST00000438862 PLA2R1Q13018 1463 aa18.69■□□□□ 0.58
CSTF3-203ENST00000438862 TROQ12816 1431 aaPredicted RBP18.68■□□□□ 0.58
CSTF3-203ENST00000438862 HSPA1LP34931 641 aa18.68■□□□□ 0.58
CSTF3-203ENST00000438862 CLIP1P30622 1438 aa18.67■□□□□ 0.58
CSTF3-203ENST00000438862 FMN1Q68DA7 1419 aa18.67■□□□□ 0.58
CSTF3-203ENST00000438862 TOM1O60784 492 aa18.67■□□□□ 0.58
CSTF3-203ENST00000438862 MYCNP04198 464 aaPredicted RBP18.66■□□□□ 0.58
CSTF3-203ENST00000438862 CDC42BPBQ9Y5S2 1711 aa18.66■□□□□ 0.58
CSTF3-203ENST00000438862 TCOF1Q13428 1488 aaKnown RBP18.64■□□□□ 0.57
CSTF3-203ENST00000438862 SUPT6HQ7KZ85 1726 aaKnown RBP18.63■□□□□ 0.57
CSTF3-203ENST00000438862 KIDINS220Q9ULH0 1771 aa18.63■□□□□ 0.57
CSTF3-203ENST00000438862 PIP4K2BP78356 416 aa18.63■□□□□ 0.57
CSTF3-203ENST00000438862 ZNF142P52746 1687 aaPredicted RBP18.62■□□□□ 0.57
CSTF3-203ENST00000438862 ABCC1P33527 1531 aa18.61■□□□□ 0.57
CSTF3-203ENST00000438862 ITSN2Q9NZM3 1697 aa18.6■□□□□ 0.57
CSTF3-203ENST00000438862 CEP170BQ9Y4F5 1589 aaPredicted RBP18.59■□□□□ 0.57
CSTF3-203ENST00000438862 MYO3AQ8NEV4 1616 aa18.59■□□□□ 0.57
CSTF3-203ENST00000438862 PREX2Q70Z35 1606 aa18.58■□□□□ 0.56
CSTF3-203ENST00000438862 CPS1P31327 1500 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms