RNA–Protein interactions for RNA: ENST00000438862.6

CSTF3-203, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 1 (best) BASIC

Gene CSTF3, Length 1,132 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-203ENST00000438862 AEBP2Q6ZN18 517 aaPredicted RBP32.63■■■□□ 2.81
CSTF3-203ENST00000438862 CHIC1Q5VXU3 224 aa30.71■■■□□ 2.51
CSTF3-203ENST00000438862 NISCHQ9Y2I1 1504 aa28.7■■■□□ 2.19
CSTF3-203ENST00000438862 SENP3Q9H4L4 574 aaPredicted RBP27.71■■■□□ 2.03
CSTF3-203ENST00000438862 PHF23Q9BUL5 403 aaPredicted RBP27.38■■□□□ 1.97
CSTF3-203ENST00000438862 ABCC9O60706 1549 aa26.66■■□□□ 1.86
CSTF3-203ENST00000438862 CCDC180Q9P1Z9 1646 aa26.05■■□□□ 1.76
CSTF3-203ENST00000438862 FOXD1Q16676 465 aa25.95■■□□□ 1.74
CSTF3-203ENST00000438862 DNAJC5BQ9UF47 199 aa25.63■■□□□ 1.69
CSTF3-203ENST00000438862 RB1CC1Q8TDY2 1594 aa25.14■■□□□ 1.61
CSTF3-203ENST00000438862 NACADO15069 1562 aa24.81■■□□□ 1.56
CSTF3-203ENST00000438862 PABPN1Q86U42 306 aaKnown RBP eCLIP24.73■■□□□ 1.55
CSTF3-203ENST00000438862 DCAF8L2P0C7V8 631 aa24.54■■□□□ 1.52
CSTF3-203ENST00000438862 UNC13AQ9UPW8 1703 aa24.51■■□□□ 1.51
CSTF3-203ENST00000438862 BICRAQ9NZM4 1560 aa24.38■■□□□ 1.49
CSTF3-203ENST00000438862 PLPPR3Q6T4P5 718 aa24.38■■□□□ 1.49
CSTF3-203ENST00000438862 MYO15BQ96JP2 1530 aa24.28■■□□□ 1.48
CSTF3-203ENST00000438862 MSH5O43196 834 aa24.25■■□□□ 1.47
CSTF3-203ENST00000438862 PPP6R1Q9UPN7 881 aa24.16■■□□□ 1.46
CSTF3-203ENST00000438862 PIAS4Q8N2W9 510 aaPredicted RBP24.13■■□□□ 1.45
CSTF3-203ENST00000438862 CECR2Q9BXF3 1484 aa24.12■■□□□ 1.45
CSTF3-203ENST00000438862 POTEDQ86YR6 584 aa24.11■■□□□ 1.45
CSTF3-203ENST00000438862 DNAJC5Q9H3Z4 198 aa24.1■■□□□ 1.45
CSTF3-203ENST00000438862 SHROOM4Q9ULL8 1493 aa24.07■■□□□ 1.44
CSTF3-203ENST00000438862 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
CSTF3-203ENST00000438862 ADRA2BP18089 450 aa24.03■■□□□ 1.44
CSTF3-203ENST00000438862 EIF4G1Q04637 1599 aaKnown RBP23.85■■□□□ 1.41
CSTF3-203ENST00000438862 DCAF1Q9Y4B6 1507 aa23.7■■□□□ 1.38
CSTF3-203ENST00000438862 SCRIBQ14160 1630 aa23.62■■□□□ 1.37
CSTF3-203ENST00000438862 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
CSTF3-203ENST00000438862 CUX2O14529 1486 aa23.31■■□□□ 1.32
CSTF3-203ENST00000438862 ERCC6Q03468 1493 aa23.1■■□□□ 1.29
CSTF3-203ENST00000438862 NCAPD3P42695 1498 aa22.92■■□□□ 1.26
CSTF3-203ENST00000438862 ATAD2BQ9ULI0 1458 aa22.72■■□□□ 1.23
CSTF3-203ENST00000438862 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
CSTF3-203ENST00000438862 NESP48681 1621 aa22.69■■□□□ 1.22
CSTF3-203ENST00000438862 HMGXB3Q12766 1538 aa22.66■■□□□ 1.22
CSTF3-203ENST00000438862 SMARCA2P51531 1590 aa22.64■■□□□ 1.22
CSTF3-203ENST00000438862 THOC2Q8NI27 1593 aaKnown RBP22.6■■□□□ 1.21
CSTF3-203ENST00000438862 SMARCA4P51532 1647 aa22.51■■□□□ 1.19
CSTF3-203ENST00000438862 LAMC3Q9Y6N6 1575 aa22.5■■□□□ 1.19
CSTF3-203ENST00000438862 BAZ1BQ9UIG0 1483 aaKnown RBP22.47■■□□□ 1.19
CSTF3-203ENST00000438862 PDS5BQ9NTI5 1447 aa22.42■■□□□ 1.18
CSTF3-203ENST00000438862 KIF21AQ7Z4S6 1674 aa22.39■■□□□ 1.17
CSTF3-203ENST00000438862 PEG3Q9GZU2 1588 aa22.33■■□□□ 1.17
CSTF3-203ENST00000438862 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.16
CSTF3-203ENST00000438862 MRC2Q9UBG0 1479 aa22.22■■□□□ 1.15
CSTF3-203ENST00000438862 OSCARQ8IYS5 282 aa22.19■■□□□ 1.14
CSTF3-203ENST00000438862 CADPSQ9ULU8 1353 aa22.19■■□□□ 1.14
CSTF3-203ENST00000438862 WDR62O43379 1518 aa22.17■■□□□ 1.14
CSTF3-203ENST00000438862 MAPK8IP2Q13387 824 aaPredicted RBP22.15■■□□□ 1.14
CSTF3-203ENST00000438862 MROH2BQ7Z745 1585 aa22.07■■□□□ 1.12
CSTF3-203ENST00000438862 CEP164Q9UPV0 1460 aa21.99■■□□□ 1.11
CSTF3-203ENST00000438862 DMRT2Q9Y5R5 561 aa21.99■■□□□ 1.11
CSTF3-203ENST00000438862 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
CSTF3-203ENST00000438862 RIMBP3CA6NJZ7 1639 aa21.88■■□□□ 1.09
CSTF3-203ENST00000438862 RIMBP3BA6NNM3 1639 aa21.88■■□□□ 1.09
CSTF3-203ENST00000438862 RIMBP3Q9UFD9 1639 aa21.88■■□□□ 1.09
CSTF3-203ENST00000438862 SCAF1Q9H7N4 1312 aaKnown RBP21.82■■□□□ 1.08
CSTF3-203ENST00000438862 CFTRP13569 1480 aa21.78■■□□□ 1.08
CSTF3-203ENST00000438862 WIZO95785 1651 aa21.77■■□□□ 1.08
CSTF3-203ENST00000438862 URB2Q14146 1524 aaKnown RBP21.75■■□□□ 1.07
CSTF3-203ENST00000438862 ARHGEF11O15085 1522 aa21.74■■□□□ 1.07
CSTF3-203ENST00000438862 CYB5RLQ6IPT4 315 aa21.67■■□□□ 1.06
CSTF3-203ENST00000438862 TRHP20396 242 aaPredicted RBP21.66■■□□□ 1.06
CSTF3-203ENST00000438862 IFT140Q96RY7 1462 aa21.6■■□□□ 1.05
CSTF3-203ENST00000438862 ZNF608Q9ULD9 1512 aaPredicted RBP21.58■■□□□ 1.04
CSTF3-203ENST00000438862 PRDM2Q13029 1718 aa21.48■■□□□ 1.03
CSTF3-203ENST00000438862 ARAP1Q96P48 1450 aa21.46■■□□□ 1.03
CSTF3-203ENST00000438862 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
CSTF3-203ENST00000438862 RSF1Q96T23 1441 aaPredicted RBP21.43■■□□□ 1.02
CSTF3-203ENST00000438862 EIF4G3O43432 1585 aaKnown RBP21.42■■□□□ 1.02
CSTF3-203ENST00000438862 TOPBP1Q92547 1522 aa21.41■■□□□ 1.02
CSTF3-203ENST00000438862 ABCC8Q09428 1581 aa21.4■■□□□ 1.02
CSTF3-203ENST00000438862 CHD1O14646 1710 aa21.39■■□□□ 1.01
CSTF3-203ENST00000438862 PPP4R3CPQ6ZMV5 832 aa21.38■■□□□ 1.01
CSTF3-203ENST00000438862 FBLN2P98095 1184 aa21.35■■□□□ 1.01
CSTF3-203ENST00000438862 AQRO60306 1485 aaKnown RBP eCLIP21.32■■□□□ 1
CSTF3-203ENST00000438862 DNMBPQ6XZF7 1577 aa21.27■■□□□ 1
CSTF3-203ENST00000438862 TARBP1Q13395 1621 aaKnown RBP21.26■□□□□ 0.99
CSTF3-203ENST00000438862 CCDC88BA6NC98 1476 aa21.25■□□□□ 0.99
CSTF3-203ENST00000438862 CLASP1Q7Z460 1538 aa21.14■□□□□ 0.98
CSTF3-203ENST00000438862 POLA1P09884 1462 aaPredicted RBP21.14■□□□□ 0.98
CSTF3-203ENST00000438862 HOXD11P31277 338 aaPredicted RBP21.12■□□□□ 0.97
CSTF3-203ENST00000438862 CHMP7Q8WUX9 453 aaPredicted RBP21.12■□□□□ 0.97
CSTF3-203ENST00000438862 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
CSTF3-203ENST00000438862 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
CSTF3-203ENST00000438862 SOGA1O94964 1423 aa21.08■□□□□ 0.97
CSTF3-203ENST00000438862 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
CSTF3-203ENST00000438862 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
CSTF3-203ENST00000438862 WDR97A6NE52 1622 aa21.06■□□□□ 0.96
CSTF3-203ENST00000438862 MAGI1Q96QZ7 1491 aaPredicted RBP21.03■□□□□ 0.96
CSTF3-203ENST00000438862 DCAF8L1A6NGE4 600 aa21.02■□□□□ 0.96
CSTF3-203ENST00000438862 CNKSR2Q8WXI2 1034 aa21■□□□□ 0.95
CSTF3-203ENST00000438862 GAPVD1Q14C86 1478 aa21■□□□□ 0.95
CSTF3-203ENST00000438862 SYNJ2O15056 1496 aa20.97■□□□□ 0.95
CSTF3-203ENST00000438862 GRIN2BQ13224 1484 aa20.96■□□□□ 0.95
CSTF3-203ENST00000438862 CACNB1Q02641 598 aaPredicted RBP20.94■□□□□ 0.94
CSTF3-203ENST00000438862 FGD5Q6ZNL6 1462 aa20.91■□□□□ 0.94
CSTF3-203ENST00000438862 RNF216Q9NWF9 866 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms