RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 KIF3BO15066 747 aa10.93□□□□□ -0.66
TMEM39A-202ENST00000438581 FKBP8Q14318 412 aa10.93□□□□□ -0.66
TMEM39A-202ENST00000438581 ANKRD30AQ9BXX3 1397 aa10.93□□□□□ -0.66
TMEM39A-202ENST00000438581 PEG3Q9GZU2 1588 aa10.92□□□□□ -0.66
TMEM39A-202ENST00000438581 KLHL34Q8N239 644 aa10.92□□□□□ -0.66
TMEM39A-202ENST00000438581 SPAG9O60271 1321 aaKnown RBP10.9□□□□□ -0.66
TMEM39A-202ENST00000438581 KANK1Q14678 1352 aa10.9□□□□□ -0.67
TMEM39A-202ENST00000438581 PHLDB1Q86UU1 1377 aa10.9□□□□□ -0.67
TMEM39A-202ENST00000438581 DNMBPQ6XZF7 1577 aa10.89□□□□□ -0.67
TMEM39A-202ENST00000438581 ERICH3Q5RHP9 1530 aa10.89□□□□□ -0.67
TMEM39A-202ENST00000438581 WDR43Q15061 677 aaKnown RBP eCLIP10.89□□□□□ -0.67
TMEM39A-202ENST00000438581 L3MBTL2Q969R5 705 aa10.88□□□□□ -0.67
TMEM39A-202ENST00000438581 TAF7LQ5H9L4 462 aa10.88□□□□□ -0.67
TMEM39A-202ENST00000438581 IFT140Q96RY7 1462 aa10.88□□□□□ -0.67
TMEM39A-202ENST00000438581 HSPA5P11021 654 aaKnown RBP10.88□□□□□ -0.67
TMEM39A-202ENST00000438581 DHX57Q6P158 1386 aaKnown RBP10.87□□□□□ -0.67
TMEM39A-202ENST00000438581 SAFB2Q14151 953 aaKnown RBP eCLIP10.86□□□□□ -0.67
TMEM39A-202ENST00000438581 IRX6P78412 446 aaPredicted RBP10.86□□□□□ -0.67
TMEM39A-202ENST00000438581 RSPH4AQ5TD94 716 aa10.86□□□□□ -0.67
TMEM39A-202ENST00000438581 C14orf37Q86TY3 774 aa10.86□□□□□ -0.67
TMEM39A-202ENST00000438581 LAMC3Q9Y6N6 1575 aa10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 POGKQ9P215 609 aa10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 KNSTRNQ9Y448 316 aa10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 SNAPC4Q5SXM2 1469 aa10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 LRRC9Q6ZRR7 1453 aa10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 CDK11BP21127 795 aaKnown RBP10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 PDE4CQ08493 712 aa10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 PRDM2Q13029 1718 aa10.85□□□□□ -0.67
TMEM39A-202ENST00000438581 CASKIN1Q8WXD9 1431 aa10.84□□□□□ -0.67
TMEM39A-202ENST00000438581 PRG4Q92954 1404 aaPredicted RBP10.83□□□□□ -0.68
TMEM39A-202ENST00000438581 TNNT2P45379 298 aaPredicted RBP10.83□□□□□ -0.68
TMEM39A-202ENST00000438581 CDCA8Q53HL2 280 aa10.83□□□□□ -0.68
TMEM39A-202ENST00000438581 FGD6Q6ZV73 1430 aa10.83□□□□□ -0.68
TMEM39A-202ENST00000438581 ABCA10Q8WWZ4 1543 aa10.83□□□□□ -0.68
TMEM39A-202ENST00000438581 CC2D1BQ5T0F9 858 aaKnown RBP10.83□□□□□ -0.68
TMEM39A-202ENST00000438581 URB2Q14146 1524 aaKnown RBP10.83□□□□□ -0.68
TMEM39A-202ENST00000438581 PPM1GO15355 546 aaPredicted RBP10.82□□□□□ -0.68
TMEM39A-202ENST00000438581 STK26Q9P289 416 aa10.82□□□□□ -0.68
TMEM39A-202ENST00000438581 NUTM2DQ5VT03 806 aaPredicted RBP10.81□□□□□ -0.68
TMEM39A-202ENST00000438581 MYOM3Q5VTT5 1437 aa10.81□□□□□ -0.68
TMEM39A-202ENST00000438581 ZBTB7CA1YPR0 619 aa10.81□□□□□ -0.68
TMEM39A-202ENST00000438581 TPRNQ4KMQ1 711 aa10.81□□□□□ -0.68
TMEM39A-202ENST00000438581 WASHC2CQ9Y4E1 1318 aa10.81□□□□□ -0.68
TMEM39A-202ENST00000438581 TMF1P82094 1093 aa10.79□□□□□ -0.68
TMEM39A-202ENST00000438581 NCOA2Q15596 1464 aa10.79□□□□□ -0.68
TMEM39A-202ENST00000438581 ZBTB47Q9UFB7 747 aaPredicted RBP10.79□□□□□ -0.68
TMEM39A-202ENST00000438581 HSP90B1P14625 803 aaKnown RBP10.79□□□□□ -0.68
TMEM39A-202ENST00000438581 ZNF608Q9ULD9 1512 aaPredicted RBP10.78□□□□□ -0.68
TMEM39A-202ENST00000438581 BRD2P25440 801 aaKnown RBP10.78□□□□□ -0.68
TMEM39A-202ENST00000438581 AFAP1Q8N556 730 aa10.77□□□□□ -0.68
TMEM39A-202ENST00000438581 NEUROD2Q15784 382 aa10.77□□□□□ -0.69
TMEM39A-202ENST00000438581 FAM69CQ0P6D2 419 aa10.77□□□□□ -0.69
TMEM39A-202ENST00000438581 ROCK2O75116 1388 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-202ENST00000438581 FYCO1Q9BQS8 1478 aa10.76□□□□□ -0.69
TMEM39A-202ENST00000438581 SRPK2P78362 688 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-202ENST00000438581 LMOD2Q6P5Q4 547 aa10.74□□□□□ -0.69
TMEM39A-202ENST00000438581 CCDC136Q96JN2 1154 aa10.73□□□□□ -0.69
TMEM39A-202ENST00000438581 EFCAB5A4FU69 1503 aa10.73□□□□□ -0.69
TMEM39A-202ENST00000438581 KIAA0586Q9BVV6 1533 aa10.73□□□□□ -0.69
TMEM39A-202ENST00000438581 KIF15Q9NS87 1388 aa10.73□□□□□ -0.69
TMEM39A-202ENST00000438581 CFAP53Q96M91 514 aa10.72□□□□□ -0.69
TMEM39A-202ENST00000438581 SUPT16HQ9Y5B9 1047 aaKnown RBP10.72□□□□□ -0.69
TMEM39A-202ENST00000438581 SYNJ2O15056 1496 aa10.72□□□□□ -0.69
TMEM39A-202ENST00000438581 SOX12O15370 315 aa10.72□□□□□ -0.69
TMEM39A-202ENST00000438581 ST20-MTHFSA0A0A6YYL1 179 aa10.71□□□□□ -0.69
TMEM39A-202ENST00000438581 HDGFP51858 240 aaKnown RBP10.71□□□□□ -0.7
TMEM39A-202ENST00000438581 CCDC144AA2RUR9 1427 aa10.71□□□□□ -0.7
TMEM39A-202ENST00000438581 BIVM-ERCC5R4GMW8 1640 aa10.7□□□□□ -0.7
TMEM39A-202ENST00000438581 CDK13Q14004 1512 aaKnown RBP10.7□□□□□ -0.7
TMEM39A-202ENST00000438581 RRBP1Q9P2E9 1410 aaKnown RBP10.7□□□□□ -0.7
TMEM39A-202ENST00000438581 TRAK1Q9UPV9 953 aa10.69□□□□□ -0.7
TMEM39A-202ENST00000438581 U2SURPO15042 1029 aaKnown RBP10.69□□□□□ -0.7
TMEM39A-202ENST00000438581 KCNA4P22459 653 aa10.69□□□□□ -0.7
TMEM39A-202ENST00000438581 ANKRD50Q9ULJ7 1429 aa10.69□□□□□ -0.7
TMEM39A-202ENST00000438581 TIAM1Q13009 1591 aa10.68□□□□□ -0.7
TMEM39A-202ENST00000438581 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.68□□□□□ -0.7
TMEM39A-202ENST00000438581 TROQ12816 1431 aaPredicted RBP10.68□□□□□ -0.7
TMEM39A-202ENST00000438581 IQGAP2Q13576 1575 aa10.68□□□□□ -0.7
TMEM39A-202ENST00000438581 GRIN2AQ12879 1464 aa10.68□□□□□ -0.7
TMEM39A-202ENST00000438581 PLB1Q6P1J6 1458 aa10.67□□□□□ -0.7
TMEM39A-202ENST00000438581 A0A0G2JS52 829 aa10.67□□□□□ -0.7
TMEM39A-202ENST00000438581 UACAQ9BZF9 1416 aa10.66□□□□□ -0.7
TMEM39A-202ENST00000438581 MORC1Q86VD1 984 aa10.66□□□□□ -0.7
TMEM39A-202ENST00000438581 ARHGAP5Q13017 1502 aa10.66□□□□□ -0.7
TMEM39A-202ENST00000438581 EPRSP07814 1512 aaKnown RBP10.66□□□□□ -0.7
TMEM39A-202ENST00000438581 NUTM2FA1L443 756 aa10.65□□□□□ -0.7
TMEM39A-202ENST00000438581 CCER2I3L3R5 266 aa10.65□□□□□ -0.7
TMEM39A-202ENST00000438581 HAP1P54257 671 aaPredicted RBP10.65□□□□□ -0.71
TMEM39A-202ENST00000438581 ARID3AQ99856 593 aa10.65□□□□□ -0.71
TMEM39A-202ENST00000438581 LAS1LQ9Y4W2 734 aaKnown RBP10.65□□□□□ -0.71
TMEM39A-202ENST00000438581 CUL7Q14999 1698 aa10.64□□□□□ -0.71
TMEM39A-202ENST00000438581 NUDCQ9Y266 331 aa10.64□□□□□ -0.71
TMEM39A-202ENST00000438581 PCF11O94913 1555 aaKnown RBP10.64□□□□□ -0.71
TMEM39A-202ENST00000438581 MAGI1Q96QZ7 1491 aaPredicted RBP10.63□□□□□ -0.71
TMEM39A-202ENST00000438581 RAPGEF3O95398 923 aa10.63□□□□□ -0.71
TMEM39A-202ENST00000438581 MAPK8IP3Q9UPT6 1336 aa10.63□□□□□ -0.71
TMEM39A-202ENST00000438581 EHBP1L1Q8N3D4 1523 aa10.63□□□□□ -0.71
TMEM39A-202ENST00000438581 RTL5Q5HYW3 569 aaPredicted RBP10.62□□□□□ -0.71
TMEM39A-202ENST00000438581 KTN1Q86UP2 1357 aaKnown RBP10.62□□□□□ -0.71
TMEM39A-202ENST00000438581 HECW1Q76N89 1606 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms