RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 GRIN2AQ12879 1464 aa16.49■□□□□ 0.23
CD44-209ENST00000433892 ROCK1Q13464 1354 aa16.49■□□□□ 0.23
CD44-209ENST00000433892 NEFLP07196 543 aa16.49■□□□□ 0.23
CD44-209ENST00000433892 MYT1Q01538 1121 aa16.48■□□□□ 0.23
CD44-209ENST00000433892 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
CD44-209ENST00000433892 RAPGEF6Q8TEU7 1601 aa16.47■□□□□ 0.23
CD44-209ENST00000433892 DNMT1P26358 1616 aaKnown RBP16.46■□□□□ 0.23
CD44-209ENST00000433892 ANKRD30BQ9BXX2 1392 aa16.46■□□□□ 0.23
CD44-209ENST00000433892 EIF4G3O43432 1585 aaKnown RBP16.46■□□□□ 0.22
CD44-209ENST00000433892 SLC4A1APQ9BWU0 796 aaKnown RBP16.45■□□□□ 0.22
CD44-209ENST00000433892 PRG4Q92954 1404 aaPredicted RBP16.44■□□□□ 0.22
CD44-209ENST00000433892 C11orf95C9JLR9 678 aaPredicted RBP16.44■□□□□ 0.22
CD44-209ENST00000433892 HNRNPUQ00839 825 aaKnown RBP eCLIP16.44■□□□□ 0.22
CD44-209ENST00000433892 RPRD2Q5VT52 1461 aaKnown RBP16.43■□□□□ 0.22
CD44-209ENST00000433892 NBPF8Q3BBV2 869 aa16.43■□□□□ 0.22
CD44-209ENST00000433892 CHMP7Q8WUX9 453 aaPredicted RBP16.43■□□□□ 0.22
CD44-209ENST00000433892 CFDP1Q9UEE9 299 aaPredicted RBP16.42■□□□□ 0.22
CD44-209ENST00000433892 FBLN2P98095 1184 aa16.42■□□□□ 0.22
CD44-209ENST00000433892 PLB1Q6P1J6 1458 aa16.41■□□□□ 0.22
CD44-209ENST00000433892 TROQ12816 1431 aaPredicted RBP16.41■□□□□ 0.22
CD44-209ENST00000433892 ZNF777Q9ULD5 760 aaPredicted RBP16.4■□□□□ 0.22
CD44-209ENST00000433892 CNTLNQ9NXG0 1405 aa16.4■□□□□ 0.22
CD44-209ENST00000433892 TEX14Q8IWB6 1497 aa16.39■□□□□ 0.21
CD44-209ENST00000433892 NCOA1Q15788 1441 aa16.39■□□□□ 0.21
CD44-209ENST00000433892 CCDC7Q96M83 1385 aa16.39■□□□□ 0.21
CD44-209ENST00000433892 CAMSAP2Q08AD1 1489 aa16.38■□□□□ 0.21
CD44-209ENST00000433892 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
CD44-209ENST00000433892 CCDC184Q52MB2 194 aa16.38■□□□□ 0.21
CD44-209ENST00000433892 CEP170Q5SW79 1584 aa16.37■□□□□ 0.21
CD44-209ENST00000433892 MAGI1Q96QZ7 1491 aaPredicted RBP16.37■□□□□ 0.21
CD44-209ENST00000433892 GPATCH8Q9UKJ3 1502 aaKnown RBP16.37■□□□□ 0.21
CD44-209ENST00000433892 SYNJ2O15056 1496 aa16.36■□□□□ 0.21
CD44-209ENST00000433892 PZPP20742 1482 aa16.35■□□□□ 0.21
CD44-209ENST00000433892 KIF14Q15058 1648 aa16.34■□□□□ 0.21
CD44-209ENST00000433892 JPH4Q96JJ6 628 aa16.34■□□□□ 0.21
CD44-209ENST00000433892 PRKRIP1Q9H875 184 aaPredicted RBP16.34■□□□□ 0.21
CD44-209ENST00000433892 SPATA31E1Q6ZUB1 1445 aa16.33■□□□□ 0.2
CD44-209ENST00000433892 CARMIL2Q6F5E8 1435 aa16.32■□□□□ 0.2
CD44-209ENST00000433892 ITSN2Q9NZM3 1697 aa16.32■□□□□ 0.2
CD44-209ENST00000433892 KIF7Q2M1P5 1343 aa16.32■□□□□ 0.2
CD44-209ENST00000433892 IRX6P78412 446 aaPredicted RBP16.3■□□□□ 0.2
CD44-209ENST00000433892 FAM9BQ8IZU0 186 aa16.3■□□□□ 0.2
CD44-209ENST00000433892 PKD2Q13563 968 aa16.29■□□□□ 0.2
CD44-209ENST00000433892 MRS2Q9HD23 443 aa16.29■□□□□ 0.2
CD44-209ENST00000433892 ADGBQ8N7X0 1667 aa16.29■□□□□ 0.2
CD44-209ENST00000433892 ANKRD30AQ9BXX3 1397 aa16.29■□□□□ 0.2
CD44-209ENST00000433892 ADCY10Q96PN6 1610 aa16.28■□□□□ 0.2
CD44-209ENST00000433892 ADGRL2O95490 1459 aa16.28■□□□□ 0.2
CD44-209ENST00000433892 KIAA1107Q9UPP5 1409 aa16.28■□□□□ 0.2
CD44-209ENST00000433892 ZNF326Q5BKZ1 582 aaKnown RBP16.28■□□□□ 0.2
CD44-209ENST00000433892 NUP160Q12769 1436 aa16.28■□□□□ 0.2
CD44-209ENST00000433892 PLEKHD1A6NEE1 506 aa16.28■□□□□ 0.2
CD44-209ENST00000433892 CROCC2H7BZ55 1655 aa16.26■□□□□ 0.19
CD44-209ENST00000433892 ANKRD50Q9ULJ7 1429 aa16.26■□□□□ 0.19
CD44-209ENST00000433892 MBD5Q9P267 1494 aa16.24■□□□□ 0.19
CD44-209ENST00000433892 RBM19Q9Y4C8 960 aaKnown RBP16.24■□□□□ 0.19
CD44-209ENST00000433892 POLR3GLQ9BT43 218 aa16.22■□□□□ 0.19
CD44-209ENST00000433892 USP47Q96K76 1375 aa16.22■□□□□ 0.19
CD44-209ENST00000433892 ATP10BO94823 1461 aa16.22■□□□□ 0.19
CD44-209ENST00000433892 CNGB1Q14028 1251 aaPredicted RBP16.22■□□□□ 0.19
CD44-209ENST00000433892 POLR1AO95602 1720 aaPredicted RBP16.22■□□□□ 0.19
CD44-209ENST00000433892 NUP155O75694 1391 aa16.21■□□□□ 0.19
CD44-209ENST00000433892 CDC42BPAQ5VT25 1732 aa16.21■□□□□ 0.19
CD44-209ENST00000433892 ABCA8O94911 1581 aa16.21■□□□□ 0.19
CD44-209ENST00000433892 C9orf84Q5VXU9 1444 aa16.21■□□□□ 0.18
CD44-209ENST00000433892 ABCC10Q5T3U5 1492 aa16.2■□□□□ 0.18
CD44-209ENST00000433892 TSPY4P0CV99 314 aa16.2■□□□□ 0.18
CD44-209ENST00000433892 TSPY10P0CW01 314 aa16.2■□□□□ 0.18
CD44-209ENST00000433892 ZBED9Q6R2W3 1325 aa16.19■□□□□ 0.18
CD44-209ENST00000433892 HNRNPMP52272 730 aaKnown RBP eCLIP16.18■□□□□ 0.18
CD44-209ENST00000433892 BCORL1Q5H9F3 1711 aa16.17■□□□□ 0.18
CD44-209ENST00000433892 DHX29Q7Z478 1369 aaKnown RBP16.17■□□□□ 0.18
CD44-209ENST00000433892 SHANK2Q9UPX8 1470 aa16.17■□□□□ 0.18
CD44-209ENST00000433892 ANP32EQ9BTT0 268 aa16.16■□□□□ 0.18
CD44-209ENST00000433892 KIF15Q9NS87 1388 aa16.15■□□□□ 0.18
CD44-209ENST00000433892 KDM5CP41229 1560 aa16.14■□□□□ 0.17
CD44-209ENST00000433892 CARD11Q9BXL7 1154 aa16.14■□□□□ 0.17
CD44-209ENST00000433892 KDM2AQ9Y2K7 1162 aa16.14■□□□□ 0.17
CD44-209ENST00000433892 UHRF1BP1Q6BDS2 1440 aa16.13■□□□□ 0.17
CD44-209ENST00000433892 ERICH6BQ5W0A0 696 aa16.12■□□□□ 0.17
CD44-209ENST00000433892 PTPRGP23470 1445 aa16.12■□□□□ 0.17
CD44-209ENST00000433892 RALGAPBQ86X10 1494 aa16.11■□□□□ 0.17
CD44-209ENST00000433892 PPP4R2Q9NY27 417 aa16.11■□□□□ 0.17
CD44-209ENST00000433892 ARID4BQ4LE39 1312 aaPredicted RBP16.11■□□□□ 0.17
CD44-209ENST00000433892 DCAF11Q8TEB1 546 aa16.1■□□□□ 0.17
CD44-209ENST00000433892 KDM5DQ9BY66 1539 aa16.1■□□□□ 0.17
CD44-209ENST00000433892 ARHGEF12Q9NZN5 1544 aa16.09■□□□□ 0.17
CD44-209ENST00000433892 ST20-MTHFSA0A0A6YYL1 179 aa16.08■□□□□ 0.17
CD44-209ENST00000433892 ARHGEF5Q12774 1597 aa16.07■□□□□ 0.16
CD44-209ENST00000433892 CCDC141Q6ZP82 1450 aa16.06■□□□□ 0.16
CD44-209ENST00000433892 ROCK2O75116 1388 aaKnown RBP16.06■□□□□ 0.16
CD44-209ENST00000433892 SENP3-EIF4A1A0A087X0R7 540 aa16.06■□□□□ 0.16
CD44-209ENST00000433892 B4GALNT3Q6L9W6 998 aa16.06■□□□□ 0.16
CD44-209ENST00000433892 SAMD9LQ8IVG5 1584 aa16.06■□□□□ 0.16
CD44-209ENST00000433892 CDC42BPBQ9Y5S2 1711 aa16.04■□□□□ 0.16
CD44-209ENST00000433892 TMC1Q8TDI8 760 aa16.03■□□□□ 0.16
CD44-209ENST00000433892 FAM135AQ9P2D6 1515 aa16.03■□□□□ 0.16
CD44-209ENST00000433892 PNISRQ8TF01 805 aaKnown RBP16.03■□□□□ 0.16
CD44-209ENST00000433892 PREX2Q70Z35 1606 aa16.02■□□□□ 0.16
CD44-209ENST00000433892 SMG6Q86US8 1419 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms