RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 KIF13AQ9H1H9 1805 aa15.36■□□□□ 0.05
CD44-207ENST00000425428 PLCH2O75038 1416 aa15.35■□□□□ 0.05
CD44-207ENST00000425428 GPATCH8Q9UKJ3 1502 aaKnown RBP15.35■□□□□ 0.05
CD44-207ENST00000425428 TEX14Q8IWB6 1497 aa15.35■□□□□ 0.05
CD44-207ENST00000425428 MAP3K4Q9Y6R4 1608 aa15.35■□□□□ 0.05
CD44-207ENST00000425428 PHLDB1Q86UU1 1377 aa15.35■□□□□ 0.05
CD44-207ENST00000425428 ARAP3Q8WWN8 1544 aa15.34■□□□□ 0.05
CD44-207ENST00000425428 FAM50AQ14320 339 aaKnown RBP15.34■□□□□ 0.05
CD44-207ENST00000425428 CDC42BPBQ9Y5S2 1711 aa15.33■□□□□ 0.05
CD44-207ENST00000425428 FGD6Q6ZV73 1430 aa15.33■□□□□ 0.04
CD44-207ENST00000425428 PLEKHH2Q8IVE3 1493 aa15.32■□□□□ 0.04
CD44-207ENST00000425428 PTPN23Q9H3S7 1636 aa15.31■□□□□ 0.04
CD44-207ENST00000425428 FANCAO15360 1455 aa15.31■□□□□ 0.04
CD44-207ENST00000425428 TRIM26Q12899 539 aaPredicted RBP15.31■□□□□ 0.04
CD44-207ENST00000425428 RSPH4AQ5TD94 716 aa15.29■□□□□ 0.04
CD44-207ENST00000425428 NEO1Q92859 1461 aa15.28■□□□□ 0.04
CD44-207ENST00000425428 RRBP1Q9P2E9 1410 aaKnown RBP15.27■□□□□ 0.04
CD44-207ENST00000425428 CAMSAP2Q08AD1 1489 aa15.27■□□□□ 0.03
CD44-207ENST00000425428 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.27■□□□□ 0.03
CD44-207ENST00000425428 AKNAQ7Z591 1439 aa15.25■□□□□ 0.03
CD44-207ENST00000425428 TSPY4P0CV99 314 aa15.25■□□□□ 0.03
CD44-207ENST00000425428 TSPY10P0CW01 314 aa15.25■□□□□ 0.03
CD44-207ENST00000425428 ADGRL1O94910 1474 aa15.24■□□□□ 0.03
CD44-207ENST00000425428 TCOF1Q13428 1488 aaKnown RBP15.24■□□□□ 0.03
CD44-207ENST00000425428 MYT1LQ9UL68 1186 aa15.24■□□□□ 0.03
CD44-207ENST00000425428 ITGAEP38570 1179 aa15.24■□□□□ 0.03
CD44-207ENST00000425428 KIAA1107Q9UPP5 1409 aa15.23■□□□□ 0.03
CD44-207ENST00000425428 SAMD9LQ8IVG5 1584 aa15.23■□□□□ 0.03
CD44-207ENST00000425428 ZNF644Q9H582 1327 aaPredicted RBP15.21■□□□□ 0.03
CD44-207ENST00000425428 HNRNPMP52272 730 aaKnown RBP eCLIP15.21■□□□□ 0.02
CD44-207ENST00000425428 SCAPERQ9BY12 1400 aa15.21■□□□□ 0.02
CD44-207ENST00000425428 ABCC1P33527 1531 aa15.2■□□□□ 0.02
CD44-207ENST00000425428 SYCP2Q9BX26 1530 aa15.2■□□□□ 0.02
CD44-207ENST00000425428 PPRC1Q5VV67 1664 aaKnown RBP15.19■□□□□ 0.02
CD44-207ENST00000425428 ARHGEF5Q12774 1597 aa15.19■□□□□ 0.02
CD44-207ENST00000425428 DENND4BO75064 1496 aaPredicted RBP15.19■□□□□ 0.02
CD44-207ENST00000425428 CCDC141Q6ZP82 1450 aa15.19■□□□□ 0.02
CD44-207ENST00000425428 DNMT1P26358 1616 aaKnown RBP15.18■□□□□ 0.02
CD44-207ENST00000425428 ZNF518AQ6AHZ1 1483 aa15.18■□□□□ 0.02
CD44-207ENST00000425428 DAPK1P53355 1430 aa15.16■□□□□ 0.02
CD44-207ENST00000425428 SPAG9O60271 1321 aaKnown RBP15.16■□□□□ 0.02
CD44-207ENST00000425428 CROCC2H7BZ55 1655 aa15.14■□□□□ 0.01
CD44-207ENST00000425428 PCGF6Q9BYE7 350 aa15.13■□□□□ 0.01
CD44-207ENST00000425428 ADGBQ8N7X0 1667 aa15.13■□□□□ 0.01
CD44-207ENST00000425428 POGZQ7Z3K3 1410 aa15.13■□□□□ 0.01
CD44-207ENST00000425428 CHIC2Q9UKJ5 165 aa15.13■□□□□ 0.01
CD44-207ENST00000425428 ANKRD30AQ9BXX3 1397 aa15.13■□□□□ 0.01
CD44-207ENST00000425428 MBD5Q9P267 1494 aa15.13■□□□□ 0.01
CD44-207ENST00000425428 SHANK2Q9UPX8 1470 aa15.13■□□□□ 0.01
CD44-207ENST00000425428 KDM6BO15054 1643 aa15.12■□□□□ 0.01
CD44-207ENST00000425428 ABCC5O15440 1437 aa15.12■□□□□ 0.01
CD44-207ENST00000425428 C9orf84Q5VXU9 1444 aa15.12■□□□□ 0.01
CD44-207ENST00000425428 AFAP1Q8N556 730 aa15.11■□□□□ 0.01
CD44-207ENST00000425428 RAPGEF3O95398 923 aa15.11■□□□□ 0.01
CD44-207ENST00000425428 RICTORQ6R327 1708 aa15.1■□□□□ 0.01
CD44-207ENST00000425428 TRAPPC8Q9Y2L5 1435 aa15.1■□□□□ 0.01
CD44-207ENST00000425428 ARHGEF12Q9NZN5 1544 aa15.1■□□□□ 0.01
CD44-207ENST00000425428 POTEDQ86YR6 584 aa15.09■□□□□ 0.01
CD44-207ENST00000425428 RTEL1-TNFRSF6BF6WH68 1400 aa15.09■□□□□ 0.01
CD44-207ENST00000425428 HECW2Q9P2P5 1572 aa15.08■□□□□ 0.01
CD44-207ENST00000425428 MAST1Q9Y2H9 1570 aa15.08■□□□□ 0.01
CD44-207ENST00000425428 ACIN1Q9UKV3 1341 aaKnown RBP15.08■□□□□ 0
CD44-207ENST00000425428 ROCK1Q13464 1354 aa15.08■□□□□ 0
CD44-207ENST00000425428 MAGI2Q86UL8 1455 aa15.08■□□□□ 0
CD44-207ENST00000425428 ATP7AQ04656 1500 aa15.07■□□□□ 0
CD44-207ENST00000425428 KDM5CP41229 1560 aa15.07■□□□□ 0
CD44-207ENST00000425428 MLH3Q9UHC1 1453 aa15.06■□□□□ 0
CD44-207ENST00000425428 RRP7BPQ9NSQ0 103 aa15.06■□□□□ 0
CD44-207ENST00000425428 ADGRL2O95490 1459 aa15.04■□□□□ -0
CD44-207ENST00000425428 ZMYM4Q5VZL5 1548 aa15.04■□□□□ -0
CD44-207ENST00000425428 PLXNC1O60486 1568 aa15.04■□□□□ -0
CD44-207ENST00000425428 KIF15Q9NS87 1388 aa15.03■□□□□ -0
CD44-207ENST00000425428 INO80Q9ULG1 1556 aaPredicted RBP15.03■□□□□ -0
CD44-207ENST00000425428 SENP3Q9H4L4 574 aaPredicted RBP15.03■□□□□ -0
CD44-207ENST00000425428 NCOA1Q15788 1441 aa15.03■□□□□ -0
CD44-207ENST00000425428 ZFYVE16Q7Z3T8 1539 aa15.03■□□□□ -0
CD44-207ENST00000425428 KIDINS220Q9ULH0 1771 aa15.02□□□□□ -0.01
CD44-207ENST00000425428 GCC2Q8IWJ2 1684 aa15.01□□□□□ -0.01
CD44-207ENST00000425428 FRMPD1Q5SYB0 1578 aa15.01□□□□□ -0.01
CD44-207ENST00000425428 DUOX2Q9NRD8 1548 aa15.01□□□□□ -0.01
CD44-207ENST00000425428 HFM1A2PYH4 1435 aa15.01□□□□□ -0.01
CD44-207ENST00000425428 PTPRKQ15262 1439 aa15.01□□□□□ -0.01
CD44-207ENST00000425428 SETD5Q9C0A6 1442 aa15□□□□□ -0.01
CD44-207ENST00000425428 COL17A1Q9UMD9 1497 aaPredicted RBP14.98□□□□□ -0.01
CD44-207ENST00000425428 ATP10AO60312 1499 aa14.98□□□□□ -0.01
CD44-207ENST00000425428 ANKRD50Q9ULJ7 1429 aa14.97□□□□□ -0.01
CD44-207ENST00000425428 A2MP01023 1474 aa14.97□□□□□ -0.01
CD44-207ENST00000425428 ERBINQ96RT1 1412 aa14.97□□□□□ -0.01
CD44-207ENST00000425428 NAIPQ13075 1403 aa14.96□□□□□ -0.01
CD44-207ENST00000425428 DHX29Q7Z478 1369 aaKnown RBP14.96□□□□□ -0.01
CD44-207ENST00000425428 ABCA6Q8N139 1617 aa14.96□□□□□ -0.01
CD44-207ENST00000425428 ARHGEF40Q8TER5 1519 aa14.95□□□□□ -0.02
CD44-207ENST00000425428 ARID4BQ4LE39 1312 aaPredicted RBP14.95□□□□□ -0.02
CD44-207ENST00000425428 DIP2CQ9Y2E4 1556 aa14.95□□□□□ -0.02
CD44-207ENST00000425428 HRCP23327 699 aa14.95□□□□□ -0.02
CD44-207ENST00000425428 TRIM52Q96A61 297 aa14.95□□□□□ -0.02
CD44-207ENST00000425428 YEATS2Q9ULM3 1422 aa14.94□□□□□ -0.02
CD44-207ENST00000425428 EIF2AK4Q9P2K8 1649 aaKnown RBP14.94□□□□□ -0.02
CD44-207ENST00000425428 KANK1Q14678 1352 aa14.93□□□□□ -0.02
CD44-207ENST00000425428 RAB3GAP2Q9H2M9 1393 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms