RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 CCNB3Q8WWL7 1395 aa26.47■■□□□ 1.83
COL7A1-202ENST00000422991 ARHGAP5Q13017 1502 aa26.45■■□□□ 1.83
COL7A1-202ENST00000422991 FANCAO15360 1455 aa26.43■■□□□ 1.82
COL7A1-202ENST00000422991 NEO1Q92859 1461 aa26.42■■□□□ 1.82
COL7A1-202ENST00000422991 MYOM3Q5VTT5 1437 aa26.39■■□□□ 1.82
COL7A1-202ENST00000422991 PHLDB1Q86UU1 1377 aa26.39■■□□□ 1.82
COL7A1-202ENST00000422991 PPARGC1BQ86YN6 1023 aaKnown RBP26.38■■□□□ 1.81
COL7A1-202ENST00000422991 SAMD9LQ8IVG5 1584 aa26.37■■□□□ 1.81
COL7A1-202ENST00000422991 AKNAQ7Z591 1439 aa26.34■■□□□ 1.81
COL7A1-202ENST00000422991 EFCAB2Q5VUJ9 269 aa26.34■■□□□ 1.81
COL7A1-202ENST00000422991 ABCC1P33527 1531 aa26.33■■□□□ 1.81
COL7A1-202ENST00000422991 CFDP1Q9UEE9 299 aaPredicted RBP26.32■■□□□ 1.8
COL7A1-202ENST00000422991 MIA2Q96PC5 1412 aa26.31■■□□□ 1.8
COL7A1-202ENST00000422991 COL17A1Q9UMD9 1497 aaPredicted RBP26.31■■□□□ 1.8
COL7A1-202ENST00000422991 ADGRL1O94910 1474 aa26.3■■□□□ 1.8
COL7A1-202ENST00000422991 FGD6Q6ZV73 1430 aa26.3■■□□□ 1.8
COL7A1-202ENST00000422991 CAMSAP2Q08AD1 1489 aa26.28■■□□□ 1.8
COL7A1-202ENST00000422991 PTPN23Q9H3S7 1636 aa26.28■■□□□ 1.8
COL7A1-202ENST00000422991 PLEKHH2Q8IVE3 1493 aa26.27■■□□□ 1.8
COL7A1-202ENST00000422991 SYCP2Q9BX26 1530 aa26.26■■□□□ 1.79
COL7A1-202ENST00000422991 RICTORQ6R327 1708 aa26.25■■□□□ 1.79
COL7A1-202ENST00000422991 FRMPD1Q5SYB0 1578 aa26.24■■□□□ 1.79
COL7A1-202ENST00000422991 ARHGEF12Q9NZN5 1544 aa26.24■■□□□ 1.79
COL7A1-202ENST00000422991 AEBP2Q6ZN18 517 aaPredicted RBP26.24■■□□□ 1.79
COL7A1-202ENST00000422991 ZNF777Q9ULD5 760 aaPredicted RBP26.24■■□□□ 1.79
COL7A1-202ENST00000422991 SCAPERQ9BY12 1400 aa26.23■■□□□ 1.79
COL7A1-202ENST00000422991 TCOF1Q13428 1488 aaKnown RBP26.23■■□□□ 1.79
COL7A1-202ENST00000422991 KIAA1107Q9UPP5 1409 aa26.22■■□□□ 1.79
COL7A1-202ENST00000422991 ZNF644Q9H582 1327 aaPredicted RBP26.22■■□□□ 1.79
COL7A1-202ENST00000422991 DENND4BO75064 1496 aaPredicted RBP26.22■■□□□ 1.79
COL7A1-202ENST00000422991 POGZQ7Z3K3 1410 aa26.22■■□□□ 1.79
COL7A1-202ENST00000422991 MBD5Q9P267 1494 aa26.17■■□□□ 1.78
COL7A1-202ENST00000422991 ARHGEF5Q12774 1597 aa26.17■■□□□ 1.78
COL7A1-202ENST00000422991 ZNF518AQ6AHZ1 1483 aa26.17■■□□□ 1.78
COL7A1-202ENST00000422991 KDM5CP41229 1560 aa26.16■■□□□ 1.78
COL7A1-202ENST00000422991 TRAPPC8Q9Y2L5 1435 aa26.15■■□□□ 1.78
COL7A1-202ENST00000422991 ZMYM4Q5VZL5 1548 aa26.15■■□□□ 1.78
COL7A1-202ENST00000422991 RRBP1Q9P2E9 1410 aaKnown RBP26.14■■□□□ 1.78
COL7A1-202ENST00000422991 RAPGEF3O95398 923 aa26.12■■□□□ 1.77
COL7A1-202ENST00000422991 CROCC2H7BZ55 1655 aa26.12■■□□□ 1.77
COL7A1-202ENST00000422991 CCDC141Q6ZP82 1450 aa26.11■■□□□ 1.77
COL7A1-202ENST00000422991 DNMT1P26358 1616 aaKnown RBP26.11■■□□□ 1.77
COL7A1-202ENST00000422991 HNRNPMP52272 730 aaKnown RBP eCLIP26.11■■□□□ 1.77
COL7A1-202ENST00000422991 HECW2Q9P2P5 1572 aa26.09■■□□□ 1.77
COL7A1-202ENST00000422991 INO80Q9ULG1 1556 aaPredicted RBP26.07■■□□□ 1.76
COL7A1-202ENST00000422991 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.07■■□□□ 1.76
COL7A1-202ENST00000422991 AFAP1Q8N556 730 aa26.06■■□□□ 1.76
COL7A1-202ENST00000422991 KDM4FA0A1W2PPD8 638 aa26.05■■□□□ 1.76
COL7A1-202ENST00000422991 FAM50AQ14320 339 aaKnown RBP26.05■■□□□ 1.76
COL7A1-202ENST00000422991 ZFYVE16Q7Z3T8 1539 aa26.04■■□□□ 1.76
COL7A1-202ENST00000422991 KIDINS220Q9ULH0 1771 aa26.04■■□□□ 1.76
COL7A1-202ENST00000422991 DAPK1P53355 1430 aa26.04■■□□□ 1.76
COL7A1-202ENST00000422991 MAGI2Q86UL8 1455 aa26.04■■□□□ 1.76
COL7A1-202ENST00000422991 MLH3Q9UHC1 1453 aa26.04■■□□□ 1.76
COL7A1-202ENST00000422991 ARHGEF40Q8TER5 1519 aa26.04■■□□□ 1.76
COL7A1-202ENST00000422991 MAST1Q9Y2H9 1570 aa26.03■■□□□ 1.76
COL7A1-202ENST00000422991 ABCC5O15440 1437 aa26.03■■□□□ 1.76
COL7A1-202ENST00000422991 SHANK2Q9UPX8 1470 aa26.03■■□□□ 1.76
COL7A1-202ENST00000422991 RSPH4AQ5TD94 716 aa26.02■■□□□ 1.76
COL7A1-202ENST00000422991 ATP7AQ04656 1500 aa26.02■■□□□ 1.76
COL7A1-202ENST00000422991 ABCA6Q8N139 1617 aa25.99■■□□□ 1.75
COL7A1-202ENST00000422991 SPAG9O60271 1321 aaKnown RBP25.98■■□□□ 1.75
COL7A1-202ENST00000422991 C9orf84Q5VXU9 1444 aa25.97■■□□□ 1.75
COL7A1-202ENST00000422991 DIP2CQ9Y2E4 1556 aa25.97■■□□□ 1.75
COL7A1-202ENST00000422991 RTEL1-TNFRSF6BF6WH68 1400 aa25.97■■□□□ 1.75
COL7A1-202ENST00000422991 YEATS2Q9ULM3 1422 aa25.97■■□□□ 1.75
COL7A1-202ENST00000422991 ADGBQ8N7X0 1667 aa25.96■■□□□ 1.75
COL7A1-202ENST00000422991 PLXNC1O60486 1568 aa25.95■■□□□ 1.74
COL7A1-202ENST00000422991 TSPY4P0CV99 314 aa25.92■■□□□ 1.74
COL7A1-202ENST00000422991 TSPY10P0CW01 314 aa25.92■■□□□ 1.74
COL7A1-202ENST00000422991 PTPRKQ15262 1439 aa25.91■■□□□ 1.74
COL7A1-202ENST00000422991 ADGRL2O95490 1459 aa25.9■■□□□ 1.74
COL7A1-202ENST00000422991 REREQ9P2R6 1566 aa25.89■■□□□ 1.73
COL7A1-202ENST00000422991 ATP10AO60312 1499 aa25.87■■□□□ 1.73
COL7A1-202ENST00000422991 MYT1LQ9UL68 1186 aa25.87■■□□□ 1.73
COL7A1-202ENST00000422991 SIGLEC1Q9BZZ2 1709 aa25.86■■□□□ 1.73
COL7A1-202ENST00000422991 ITGAEP38570 1179 aa25.83■■□□□ 1.73
COL7A1-202ENST00000422991 CHIC2Q9UKJ5 165 aa25.82■■□□□ 1.72
COL7A1-202ENST00000422991 ROCK1Q13464 1354 aa25.82■■□□□ 1.72
COL7A1-202ENST00000422991 ANKRD30AQ9BXX3 1397 aa25.82■■□□□ 1.72
COL7A1-202ENST00000422991 NCOA1Q15788 1441 aa25.81■■□□□ 1.72
COL7A1-202ENST00000422991 A2MP01023 1474 aa25.81■■□□□ 1.72
COL7A1-202ENST00000422991 DUOX2Q9NRD8 1548 aa25.79■■□□□ 1.72
COL7A1-202ENST00000422991 KIF15Q9NS87 1388 aa25.79■■□□□ 1.72
COL7A1-202ENST00000422991 AGLP35573 1532 aa25.77■■□□□ 1.72
COL7A1-202ENST00000422991 BCORL1Q5H9F3 1711 aa25.75■■□□□ 1.71
COL7A1-202ENST00000422991 GCC2Q8IWJ2 1684 aa25.75■■□□□ 1.71
COL7A1-202ENST00000422991 EIF2AK4Q9P2K8 1649 aaKnown RBP25.75■■□□□ 1.71
COL7A1-202ENST00000422991 DHX29Q7Z478 1369 aaKnown RBP25.75■■□□□ 1.71
COL7A1-202ENST00000422991 RRP7BPQ9NSQ0 103 aa25.73■■□□□ 1.71
COL7A1-202ENST00000422991 ERBINQ96RT1 1412 aa25.71■■□□□ 1.71
COL7A1-202ENST00000422991 ARID4BQ4LE39 1312 aaPredicted RBP25.7■■□□□ 1.71
COL7A1-202ENST00000422991 HFM1A2PYH4 1435 aa25.68■■□□□ 1.7
COL7A1-202ENST00000422991 ADAMTSL3P82987 1691 aa25.68■■□□□ 1.7
COL7A1-202ENST00000422991 RNF17Q9BXT8 1623 aaKnown RBP25.67■■□□□ 1.7
COL7A1-202ENST00000422991 NAIPQ13075 1403 aa25.66■■□□□ 1.7
COL7A1-202ENST00000422991 ANKRD50Q9ULJ7 1429 aa25.66■■□□□ 1.7
COL7A1-202ENST00000422991 TRIM26Q12899 539 aaPredicted RBP25.64■■□□□ 1.7
COL7A1-202ENST00000422991 DEPDC5O75140 1603 aa25.63■■□□□ 1.69
COL7A1-202ENST00000422991 MROH1Q8NDA8 1641 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms