RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 SCAPERQ9BY12 1400 aa23.09■■□□□ 1.29
CHD1-202ENST00000414220 AEBP2Q6ZN18 517 aaPredicted RBP23.08■■□□□ 1.29
CHD1-202ENST00000414220 CFDP1Q9UEE9 299 aaPredicted RBP23.06■■□□□ 1.28
CHD1-202ENST00000414220 ZNF777Q9ULD5 760 aaPredicted RBP23.05■■□□□ 1.28
CHD1-202ENST00000414220 TIAM1Q13009 1591 aa23.05■■□□□ 1.28
CHD1-202ENST00000414220 MAP3K1Q13233 1512 aa23.04■■□□□ 1.28
CHD1-202ENST00000414220 MYT1LQ9UL68 1186 aa23.02■■□□□ 1.28
CHD1-202ENST00000414220 GPATCH8Q9UKJ3 1502 aaKnown RBP23.02■■□□□ 1.28
CHD1-202ENST00000414220 PREX2Q70Z35 1606 aa23■■□□□ 1.27
CHD1-202ENST00000414220 POGZQ7Z3K3 1410 aa22.99■■□□□ 1.27
CHD1-202ENST00000414220 LRRC9Q6ZRR7 1453 aa22.98■■□□□ 1.27
CHD1-202ENST00000414220 MAGI2Q86UL8 1455 aa22.98■■□□□ 1.27
CHD1-202ENST00000414220 CDC42BPBQ9Y5S2 1711 aa22.97■■□□□ 1.27
CHD1-202ENST00000414220 ZNF518AQ6AHZ1 1483 aa22.97■■□□□ 1.27
CHD1-202ENST00000414220 SUPT6HQ7KZ85 1726 aaKnown RBP22.96■■□□□ 1.27
CHD1-202ENST00000414220 PLEKHH2Q8IVE3 1493 aa22.96■■□□□ 1.27
CHD1-202ENST00000414220 NCOA2Q15596 1464 aa22.95■■□□□ 1.26
CHD1-202ENST00000414220 CDC42BPAQ5VT25 1732 aa22.95■■□□□ 1.26
CHD1-202ENST00000414220 RICTORQ6R327 1708 aa22.94■■□□□ 1.26
CHD1-202ENST00000414220 FRMPD1Q5SYB0 1578 aa22.94■■□□□ 1.26
CHD1-202ENST00000414220 ARID4BQ4LE39 1312 aaPredicted RBP22.94■■□□□ 1.26
CHD1-202ENST00000414220 KANK4Q5T7N3 995 aaPredicted RBP22.94■■□□□ 1.26
CHD1-202ENST00000414220 AFAP1Q8N556 730 aa22.94■■□□□ 1.26
CHD1-202ENST00000414220 ZMYM4Q5VZL5 1548 aa22.92■■□□□ 1.26
CHD1-202ENST00000414220 KIAA1107Q9UPP5 1409 aa22.91■■□□□ 1.26
CHD1-202ENST00000414220 ITSN2Q9NZM3 1697 aa22.9■■□□□ 1.26
CHD1-202ENST00000414220 KDM4FA0A1W2PPD8 638 aa22.9■■□□□ 1.26
CHD1-202ENST00000414220 HNRNPMP52272 730 aaKnown RBP eCLIP22.9■■□□□ 1.26
CHD1-202ENST00000414220 ABCC1P33527 1531 aa22.9■■□□□ 1.26
CHD1-202ENST00000414220 ZFYVE16Q7Z3T8 1539 aa22.9■■□□□ 1.26
CHD1-202ENST00000414220 RSPH4AQ5TD94 716 aa22.87■■□□□ 1.25
CHD1-202ENST00000414220 TRAPPC8Q9Y2L5 1435 aa22.86■■□□□ 1.25
CHD1-202ENST00000414220 ARHGEF40Q8TER5 1519 aa22.86■■□□□ 1.25
CHD1-202ENST00000414220 SAMD9LQ8IVG5 1584 aa22.85■■□□□ 1.25
CHD1-202ENST00000414220 SPAG9O60271 1321 aaKnown RBP22.84■■□□□ 1.25
CHD1-202ENST00000414220 YEATS2Q9ULM3 1422 aa22.84■■□□□ 1.25
CHD1-202ENST00000414220 ARHGEF12Q9NZN5 1544 aa22.84■■□□□ 1.25
CHD1-202ENST00000414220 MLH3Q9UHC1 1453 aa22.84■■□□□ 1.25
CHD1-202ENST00000414220 KDM5CP41229 1560 aa22.84■■□□□ 1.25
CHD1-202ENST00000414220 ATP10AO60312 1499 aa22.83■■□□□ 1.25
CHD1-202ENST00000414220 SYCP2Q9BX26 1530 aa22.82■■□□□ 1.24
CHD1-202ENST00000414220 ZNF644Q9H582 1327 aaPredicted RBP22.82■■□□□ 1.24
CHD1-202ENST00000414220 C9orf84Q5VXU9 1444 aa22.8■■□□□ 1.24
CHD1-202ENST00000414220 MIA2Q96PC5 1412 aa22.8■■□□□ 1.24
CHD1-202ENST00000414220 HECW2Q9P2P5 1572 aa22.8■■□□□ 1.24
CHD1-202ENST00000414220 MYOM3Q5VTT5 1437 aa22.79■■□□□ 1.24
CHD1-202ENST00000414220 TSPY4P0CV99 314 aa22.78■■□□□ 1.24
CHD1-202ENST00000414220 TSPY10P0CW01 314 aa22.78■■□□□ 1.24
CHD1-202ENST00000414220 CAMSAP2Q08AD1 1489 aa22.75■■□□□ 1.23
CHD1-202ENST00000414220 MLECQ14165 292 aa22.73■■□□□ 1.23
CHD1-202ENST00000414220 MBD5Q9P267 1494 aa22.73■■□□□ 1.23
CHD1-202ENST00000414220 CCDC141Q6ZP82 1450 aa22.72■■□□□ 1.23
CHD1-202ENST00000414220 RTEL1-TNFRSF6BF6WH68 1400 aa22.7■■□□□ 1.22
CHD1-202ENST00000414220 ESF1Q9H501 851 aaKnown RBP22.69■■□□□ 1.22
CHD1-202ENST00000414220 DIP2CQ9Y2E4 1556 aa22.68■■□□□ 1.22
CHD1-202ENST00000414220 ATP7AQ04656 1500 aa22.68■■□□□ 1.22
CHD1-202ENST00000414220 BCORL1Q5H9F3 1711 aa22.67■■□□□ 1.22
CHD1-202ENST00000414220 REREQ9P2R6 1566 aa22.67■■□□□ 1.22
CHD1-202ENST00000414220 KIDINS220Q9ULH0 1771 aa22.66■■□□□ 1.22
CHD1-202ENST00000414220 ABCA6Q8N139 1617 aa22.65■■□□□ 1.22
CHD1-202ENST00000414220 ARHGEF5Q12774 1597 aa22.64■■□□□ 1.22
CHD1-202ENST00000414220 ADAMTSL3P82987 1691 aa22.64■■□□□ 1.21
CHD1-202ENST00000414220 FGD6Q6ZV73 1430 aa22.64■■□□□ 1.21
CHD1-202ENST00000414220 AGLP35573 1532 aa22.62■■□□□ 1.21
CHD1-202ENST00000414220 A2MP01023 1474 aa22.62■■□□□ 1.21
CHD1-202ENST00000414220 INO80Q9ULG1 1556 aaPredicted RBP22.62■■□□□ 1.21
CHD1-202ENST00000414220 PTPN23Q9H3S7 1636 aa22.6■■□□□ 1.21
CHD1-202ENST00000414220 PTPRMP28827 1452 aa22.6■■□□□ 1.21
CHD1-202ENST00000414220 FAM50AQ14320 339 aaKnown RBP22.59■■□□□ 1.21
CHD1-202ENST00000414220 DHX29Q7Z478 1369 aaKnown RBP22.58■■□□□ 1.21
CHD1-202ENST00000414220 MADDQ8WXG6 1647 aa22.57■■□□□ 1.2
CHD1-202ENST00000414220 PPARGC1BQ86YN6 1023 aaKnown RBP22.57■■□□□ 1.2
CHD1-202ENST00000414220 TCOF1Q13428 1488 aaKnown RBP22.56■■□□□ 1.2
CHD1-202ENST00000414220 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
CHD1-202ENST00000414220 PPP6R1Q9UPN7 881 aa22.55■■□□□ 1.2
CHD1-202ENST00000414220 ADGBQ8N7X0 1667 aa22.55■■□□□ 1.2
CHD1-202ENST00000414220 GGT6Q6P531 493 aa22.54■■□□□ 1.2
CHD1-202ENST00000414220 SIGLEC1Q9BZZ2 1709 aa22.54■■□□□ 1.2
CHD1-202ENST00000414220 KIF3BO15066 747 aa22.52■■□□□ 1.2
CHD1-202ENST00000414220 MAST1Q9Y2H9 1570 aa22.51■■□□□ 1.19
CHD1-202ENST00000414220 ABCC5O15440 1437 aa22.51■■□□□ 1.19
CHD1-202ENST00000414220 CNTLNQ9NXG0 1405 aa22.51■■□□□ 1.19
CHD1-202ENST00000414220 RIMS1Q86UR5 1692 aaKnown RBP22.51■■□□□ 1.19
CHD1-202ENST00000414220 DAPK1P53355 1430 aa22.5■■□□□ 1.19
CHD1-202ENST00000414220 SHANK2Q9UPX8 1470 aa22.5■■□□□ 1.19
CHD1-202ENST00000414220 FER1L4A9Z1Z3 1794 aa22.5■■□□□ 1.19
CHD1-202ENST00000414220 PLXNC1O60486 1568 aa22.49■■□□□ 1.19
CHD1-202ENST00000414220 ANKRD30AQ9BXX3 1397 aa22.47■■□□□ 1.19
CHD1-202ENST00000414220 RRP7BPQ9NSQ0 103 aa22.46■■□□□ 1.19
CHD1-202ENST00000414220 CHIC2Q9UKJ5 165 aa22.46■■□□□ 1.19
CHD1-202ENST00000414220 DNMT1P26358 1616 aaKnown RBP22.46■■□□□ 1.19
CHD1-202ENST00000414220 KIF15Q9NS87 1388 aa22.43■■□□□ 1.18
CHD1-202ENST00000414220 CEBPAP49715 358 aaPredicted RBP22.42■■□□□ 1.18
CHD1-202ENST00000414220 DUOX2Q9NRD8 1548 aa22.41■■□□□ 1.18
CHD1-202ENST00000414220 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.41■■□□□ 1.18
CHD1-202ENST00000414220 WASHC2CQ9Y4E1 1318 aa22.4■■□□□ 1.18
CHD1-202ENST00000414220 ZMYM3Q14202 1370 aa22.39■■□□□ 1.18
CHD1-202ENST00000414220 CROCC2H7BZ55 1655 aa22.38■■□□□ 1.17
CHD1-202ENST00000414220 ITGAEP38570 1179 aa22.37■■□□□ 1.17
CHD1-202ENST00000414220 NCOA1Q15788 1441 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms