RNA–Protein interactions for RNA: ENST00000414220.2
Retrieved 7 of 7 RNA–protein pairs in 11.5 ms
CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, human
TSL 5
Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .
RNA | Protein | Prediction (catRAPID) | Interaction (ENCODE eCLIP) | ||||||
---|---|---|---|---|---|---|---|---|---|
Transcript Symbol | Ensembl Transcript ID | Gene | UniProt Accession | Length | Protein Status | Prediction Score | Prediction z-Score | p-Value | Fold Change |
CHD1-202 | ENST00000414220 | ZNF622 | Q969S3 | 477 aa | Known RBP eCLIP | 18.87 | ■□□□□ 0.61 | 4e-9 | ■■■■■ 36.8 |
CHD1-202 | ENST00000414220 | BUD13 | Q9BRD0 | 619 aa | Known RBP eCLIP | 16.57 | ■□□□□ 0.24 | 3e-7 | ■■■■■ 35.2 |
CHD1-202 | ENST00000414220 | FXR2 | P51116 | 673 aa | Known RBP eCLIP | 16.44 | ■□□□□ 0.22 | 8e-7 | ■■■■■ 29.8 |
CHD1-202 | ENST00000414220 | TARDBP | Q13148 | 414 aa | Known RBP eCLIP | 14.51 | □□□□□ -0.09 | 3e-8 | ■■■■■ 28.2 |
CHD1-202 | ENST00000414220 | BCLAF1 | Q9NYF8 | 920 aa | Known RBP eCLIP | 19.82 | ■□□□□ 0.76 | 4e-8 | ■■■□□ 18.7 |
CHD1-202 | ENST00000414220 | UCHL5 | Q9Y5K5 | 329 aa | Known RBP eCLIP | 15.3 | ■□□□□ 0.04 | 2e-10 | ■■■□□ 15.7 |
CHD1-202 | ENST00000414220 | PUM1 | Q14671 | 1186 aa | Known RBP eCLIP | 14.93 | □□□□□ -0.02 | 9e-8 | ■■□□□ 13 |