RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 NISCHQ9Y2I1 1504 aa35.37■■■■□ 3.25
CHD1-202ENST00000414220 CCDC180Q9P1Z9 1646 aa31.41■■■□□ 2.62
CHD1-202ENST00000414220 ABCC9O60706 1549 aa30.79■■■□□ 2.52
CHD1-202ENST00000414220 DCAF8L2P0C7V8 631 aa29.76■■■□□ 2.35
CHD1-202ENST00000414220 RB1CC1Q8TDY2 1594 aa29.65■■■□□ 2.34
CHD1-202ENST00000414220 NACADO15069 1562 aa29.61■■■□□ 2.33
CHD1-202ENST00000414220 ZCCHC6Q5VYS8 1495 aaKnown RBP29.43■■■□□ 2.3
CHD1-202ENST00000414220 MYO15BQ96JP2 1530 aa29.42■■■□□ 2.3
CHD1-202ENST00000414220 DCAF1Q9Y4B6 1507 aa29.28■■■□□ 2.28
CHD1-202ENST00000414220 PABPN1Q86U42 306 aaKnown RBP eCLIP28.83■■■□□ 2.21
CHD1-202ENST00000414220 UNC13AQ9UPW8 1703 aa28.76■■■□□ 2.19
CHD1-202ENST00000414220 SCRIBQ14160 1630 aa28.65■■■□□ 2.18
CHD1-202ENST00000414220 BICRAQ9NZM4 1560 aa28.6■■■□□ 2.17
CHD1-202ENST00000414220 SHROOM4Q9ULL8 1493 aa28.47■■■□□ 2.15
CHD1-202ENST00000414220 DNAJC5BQ9UF47 199 aa28.22■■■□□ 2.11
CHD1-202ENST00000414220 EIF4G1Q04637 1599 aaKnown RBP27.94■■■□□ 2.06
CHD1-202ENST00000414220 CC2D2AQ9P2K1 1620 aa27.81■■■□□ 2.04
CHD1-202ENST00000414220 CECR2Q9BXF3 1484 aa27.7■■■□□ 2.02
CHD1-202ENST00000414220 BAZ1AQ9NRL2 1556 aaPredicted RBP27.45■■□□□ 1.99
CHD1-202ENST00000414220 SMARCA4P51532 1647 aa27.41■■□□□ 1.98
CHD1-202ENST00000414220 NCAPD3P42695 1498 aa27.32■■□□□ 1.96
CHD1-202ENST00000414220 ATAD2BQ9ULI0 1458 aa27.32■■□□□ 1.96
CHD1-202ENST00000414220 SMARCA2P51531 1590 aa27.31■■□□□ 1.96
CHD1-202ENST00000414220 MROH2BQ7Z745 1585 aa27.22■■□□□ 1.95
CHD1-202ENST00000414220 HMGXB3Q12766 1538 aa27.15■■□□□ 1.94
CHD1-202ENST00000414220 PEG3Q9GZU2 1588 aa27.14■■□□□ 1.93
CHD1-202ENST00000414220 BAZ1BQ9UIG0 1483 aaKnown RBP27.13■■□□□ 1.93
CHD1-202ENST00000414220 RSF1Q96T23 1441 aaPredicted RBP26.95■■□□□ 1.9
CHD1-202ENST00000414220 WIZO95785 1651 aa26.89■■□□□ 1.9
CHD1-202ENST00000414220 TOP2AP11388 1531 aaKnown RBP26.67■■□□□ 1.86
CHD1-202ENST00000414220 ERCC6Q03468 1493 aa26.63■■□□□ 1.85
CHD1-202ENST00000414220 LAMC3Q9Y6N6 1575 aa26.59■■□□□ 1.85
CHD1-202ENST00000414220 NESP48681 1621 aa26.58■■□□□ 1.85
CHD1-202ENST00000414220 CADPSQ9ULU8 1353 aa26.57■■□□□ 1.84
CHD1-202ENST00000414220 PDS5BQ9NTI5 1447 aa26.51■■□□□ 1.83
CHD1-202ENST00000414220 SUPT5HO00267 1087 aaKnown RBP26.39■■□□□ 1.82
CHD1-202ENST00000414220 CCDC88BA6NC98 1476 aa26.37■■□□□ 1.81
CHD1-202ENST00000414220 CFTRP13569 1480 aa26.36■■□□□ 1.81
CHD1-202ENST00000414220 CUX2O14529 1486 aa26.31■■□□□ 1.8
CHD1-202ENST00000414220 FANCD2Q9BXW9 1451 aa26.23■■□□□ 1.79
CHD1-202ENST00000414220 KIF21AQ7Z4S6 1674 aa26.22■■□□□ 1.79
CHD1-202ENST00000414220 CEP164Q9UPV0 1460 aa26.22■■□□□ 1.79
CHD1-202ENST00000414220 MRC2Q9UBG0 1479 aa26.16■■□□□ 1.78
CHD1-202ENST00000414220 THOC2Q8NI27 1593 aaKnown RBP26.15■■□□□ 1.78
CHD1-202ENST00000414220 PRDM2Q13029 1718 aa26.03■■□□□ 1.76
CHD1-202ENST00000414220 WDR62O43379 1518 aa26.02■■□□□ 1.76
CHD1-202ENST00000414220 ABCC8Q09428 1581 aa25.9■■□□□ 1.74
CHD1-202ENST00000414220 URB2Q14146 1524 aaKnown RBP25.89■■□□□ 1.74
CHD1-202ENST00000414220 TOPBP1Q92547 1522 aa25.77■■□□□ 1.72
CHD1-202ENST00000414220 DNMBPQ6XZF7 1577 aa25.74■■□□□ 1.71
CHD1-202ENST00000414220 IFT140Q96RY7 1462 aa25.67■■□□□ 1.7
CHD1-202ENST00000414220 POLA1P09884 1462 aaPredicted RBP25.55■■□□□ 1.68
CHD1-202ENST00000414220 DNAJC5Q9H3Z4 198 aa25.54■■□□□ 1.68
CHD1-202ENST00000414220 CUX1P39880 1505 aa25.53■■□□□ 1.68
CHD1-202ENST00000414220 SOGA1O94964 1423 aa25.53■■□□□ 1.68
CHD1-202ENST00000414220 FGD5Q6ZNL6 1462 aa25.5■■□□□ 1.67
CHD1-202ENST00000414220 WRNQ14191 1432 aaPredicted RBP eCLIP25.46■■□□□ 1.67
CHD1-202ENST00000414220 ZNF608Q9ULD9 1512 aaPredicted RBP25.46■■□□□ 1.67
CHD1-202ENST00000414220 RAD54L2Q9Y4B4 1467 aa25.44■■□□□ 1.66
CHD1-202ENST00000414220 TARBP1Q13395 1621 aaKnown RBP25.42■■□□□ 1.66
CHD1-202ENST00000414220 AQRO60306 1485 aaKnown RBP eCLIP25.38■■□□□ 1.65
CHD1-202ENST00000414220 TDRD9Q8NDG6 1382 aaKnown RBP25.35■■□□□ 1.65
CHD1-202ENST00000414220 EIF4G3O43432 1585 aaKnown RBP25.35■■□□□ 1.65
CHD1-202ENST00000414220 TOP2BQ02880 1626 aa25.34■■□□□ 1.65
CHD1-202ENST00000414220 OSCARQ8IYS5 282 aa25.33■■□□□ 1.65
CHD1-202ENST00000414220 WDR97A6NE52 1622 aa25.33■■□□□ 1.65
CHD1-202ENST00000414220 BIVM-ERCC5R4GMW8 1640 aa25.3■■□□□ 1.64
CHD1-202ENST00000414220 SYNJ1O43426 1573 aa25.27■■□□□ 1.64
CHD1-202ENST00000414220 ABCA10Q8WWZ4 1543 aa25.26■■□□□ 1.63
CHD1-202ENST00000414220 FBLN2P98095 1184 aa25.22■■□□□ 1.63
CHD1-202ENST00000414220 GRIN2BQ13224 1484 aa25.21■■□□□ 1.63
CHD1-202ENST00000414220 GAPVD1Q14C86 1478 aa25.21■■□□□ 1.63
CHD1-202ENST00000414220 CHMP7Q8WUX9 453 aaPredicted RBP25.15■■□□□ 1.62
CHD1-202ENST00000414220 MAGI1Q96QZ7 1491 aaPredicted RBP25.14■■□□□ 1.61
CHD1-202ENST00000414220 SNAPC4Q5SXM2 1469 aa25.13■■□□□ 1.61
CHD1-202ENST00000414220 ABCA5Q8WWZ7 1642 aa25.08■■□□□ 1.61
CHD1-202ENST00000414220 SYNJ2O15056 1496 aa25.03■■□□□ 1.6
CHD1-202ENST00000414220 PBRM1Q86U86 1689 aa25.03■■□□□ 1.6
CHD1-202ENST00000414220 CHD1O14646 1710 aa24.99■■□□□ 1.59
CHD1-202ENST00000414220 KIF27Q86VH2 1401 aa24.99■■□□□ 1.59
CHD1-202ENST00000414220 TRIM41Q8WV44 630 aa24.98■■□□□ 1.59
CHD1-202ENST00000414220 ERICH3Q5RHP9 1530 aa24.97■■□□□ 1.59
CHD1-202ENST00000414220 FHAD1B1AJZ9 1412 aa24.94■■□□□ 1.58
CHD1-202ENST00000414220 ADAMTS12P58397 1594 aa24.87■■□□□ 1.57
CHD1-202ENST00000414220 GRIN2AQ12879 1464 aa24.85■■□□□ 1.57
CHD1-202ENST00000414220 IGF1RP08069 1367 aa24.82■■□□□ 1.56
CHD1-202ENST00000414220 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
CHD1-202ENST00000414220 CLASP1Q7Z460 1538 aa24.76■■□□□ 1.55
CHD1-202ENST00000414220 NUP160Q12769 1436 aa24.73■■□□□ 1.55
CHD1-202ENST00000414220 CARMIL1Q5VZK9 1371 aa24.73■■□□□ 1.55
CHD1-202ENST00000414220 CUL7Q14999 1698 aa24.72■■□□□ 1.55
CHD1-202ENST00000414220 RIMBP3CA6NJZ7 1639 aa24.72■■□□□ 1.55
CHD1-202ENST00000414220 RIMBP3BA6NNM3 1639 aa24.72■■□□□ 1.55
CHD1-202ENST00000414220 RIMBP3Q9UFD9 1639 aa24.72■■□□□ 1.55
CHD1-202ENST00000414220 CYB5RLQ6IPT4 315 aa24.66■■□□□ 1.54
CHD1-202ENST00000414220 CEP170Q5SW79 1584 aa24.65■■□□□ 1.54
CHD1-202ENST00000414220 RUSC2Q8N2Y8 1516 aa24.6■■□□□ 1.53
CHD1-202ENST00000414220 JPH4Q96JJ6 628 aa24.59■■□□□ 1.53
CHD1-202ENST00000414220 CHIC1Q5VXU3 224 aa24.57■■□□□ 1.52
CHD1-202ENST00000414220 RAPGEF2Q9Y4G8 1499 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms