RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TONSLQ96HA7 1378 aa13.66□□□□□ -0.22
PTCHD4-202ENST00000398738 CLEC11AQ9Y240 323 aa13.66□□□□□ -0.22
PTCHD4-202ENST00000398738 PHLDB1Q86UU1 1377 aa13.64□□□□□ -0.23
PTCHD4-202ENST00000398738 PDS5BQ9NTI5 1447 aa13.64□□□□□ -0.23
PTCHD4-202ENST00000398738 VSIG10Q8N0Z9 540 aa13.63□□□□□ -0.23
PTCHD4-202ENST00000398738 PRXQ9BXM0 1461 aa13.63□□□□□ -0.23
PTCHD4-202ENST00000398738 CCDC184Q52MB2 194 aa13.62□□□□□ -0.23
PTCHD4-202ENST00000398738 SPRYD3Q8NCJ5 442 aa13.62□□□□□ -0.23
PTCHD4-202ENST00000398738 STAG3Q9UJ98 1225 aa13.62□□□□□ -0.23
PTCHD4-202ENST00000398738 FANCIQ9NVI1 1328 aa13.62□□□□□ -0.23
PTCHD4-202ENST00000398738 CUX2O14529 1486 aa13.62□□□□□ -0.23
PTCHD4-202ENST00000398738 ARHGAP35Q9NRY4 1499 aa13.62□□□□□ -0.23
PTCHD4-202ENST00000398738 WDR62O43379 1518 aa13.61□□□□□ -0.23
PTCHD4-202ENST00000398738 KIF27Q86VH2 1401 aa13.59□□□□□ -0.23
PTCHD4-202ENST00000398738 POLR3GLQ9BT43 218 aa13.58□□□□□ -0.23
PTCHD4-202ENST00000398738 PPP4R2Q9NY27 417 aa13.58□□□□□ -0.24
PTCHD4-202ENST00000398738 FANCD2Q9BXW9 1451 aa13.57□□□□□ -0.24
PTCHD4-202ENST00000398738 PAK3O75914 559 aaPredicted RBP13.57□□□□□ -0.24
PTCHD4-202ENST00000398738 ERCC6Q03468 1493 aa13.57□□□□□ -0.24
PTCHD4-202ENST00000398738 MRC2Q9UBG0 1479 aa13.56□□□□□ -0.24
PTCHD4-202ENST00000398738 MRS2Q9HD23 443 aa13.55□□□□□ -0.24
PTCHD4-202ENST00000398738 CHIC2Q9UKJ5 165 aa13.55□□□□□ -0.24
PTCHD4-202ENST00000398738 HSPA5P11021 654 aaKnown RBP13.54□□□□□ -0.24
PTCHD4-202ENST00000398738 NUBP1P53384 320 aa13.53□□□□□ -0.24
PTCHD4-202ENST00000398738 RASEFQ8IZ41 740 aa13.53□□□□□ -0.24
PTCHD4-202ENST00000398738 TIMELESSQ9UNS1 1208 aa13.52□□□□□ -0.24
PTCHD4-202ENST00000398738 NOP58Q9Y2X3 529 aaKnown RBP13.52□□□□□ -0.24
PTCHD4-202ENST00000398738 RRP7BPQ9NSQ0 103 aa13.51□□□□□ -0.25
PTCHD4-202ENST00000398738 TOP2BQ02880 1626 aa13.51□□□□□ -0.25
PTCHD4-202ENST00000398738 ERICH3Q5RHP9 1530 aa13.51□□□□□ -0.25
PTCHD4-202ENST00000398738 WASHC2AQ641Q2 1341 aa13.51□□□□□ -0.25
PTCHD4-202ENST00000398738 URB2Q14146 1524 aaKnown RBP13.5□□□□□ -0.25
PTCHD4-202ENST00000398738 NPM2Q86SE8 214 aaKnown RBP13.5□□□□□ -0.25
PTCHD4-202ENST00000398738 PYGBP11216 843 aa13.49□□□□□ -0.25
PTCHD4-202ENST00000398738 DCAF8Q5TAQ9 597 aa13.49□□□□□ -0.25
PTCHD4-202ENST00000398738 MNX1P50219 401 aaPredicted RBP13.49□□□□□ -0.25
PTCHD4-202ENST00000398738 LRRC9Q6ZRR7 1453 aa13.49□□□□□ -0.25
PTCHD4-202ENST00000398738 ANO8Q9HCE9 1232 aaPredicted RBP13.48□□□□□ -0.25
PTCHD4-202ENST00000398738 ARID3CA6NKF2 412 aa13.47□□□□□ -0.25
PTCHD4-202ENST00000398738 RTL5Q5HYW3 569 aaPredicted RBP13.47□□□□□ -0.25
PTCHD4-202ENST00000398738 STK25O00506 426 aa13.46□□□□□ -0.25
PTCHD4-202ENST00000398738 DNMBPQ6XZF7 1577 aa13.46□□□□□ -0.26
PTCHD4-202ENST00000398738 CARMIL1Q5VZK9 1371 aa13.45□□□□□ -0.26
PTCHD4-202ENST00000398738 EIF4G2P78344 907 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTCHD4-202ENST00000398738 CCDC136Q96JN2 1154 aa13.45□□□□□ -0.26
PTCHD4-202ENST00000398738 IGF1RP08069 1367 aa13.45□□□□□ -0.26
PTCHD4-202ENST00000398738 CHADLQ6NUI6 762 aa13.45□□□□□ -0.26
PTCHD4-202ENST00000398738 CUX1P39880 1505 aa13.45□□□□□ -0.26
PTCHD4-202ENST00000398738 C11orf95C9JLR9 678 aaPredicted RBP13.45□□□□□ -0.26
PTCHD4-202ENST00000398738 FHOD3Q2V2M9 1422 aa13.44□□□□□ -0.26
PTCHD4-202ENST00000398738 CREBZFQ9NS37 354 aa13.44□□□□□ -0.26
PTCHD4-202ENST00000398738 ANP32AP39687 249 aaKnown RBP13.43□□□□□ -0.26
PTCHD4-202ENST00000398738 TIAM1Q13009 1591 aa13.43□□□□□ -0.26
PTCHD4-202ENST00000398738 PRKRIP1Q9H875 184 aaPredicted RBP13.42□□□□□ -0.26
PTCHD4-202ENST00000398738 ZBTB47Q9UFB7 747 aaPredicted RBP13.42□□□□□ -0.26
PTCHD4-202ENST00000398738 TOPBP1Q92547 1522 aa13.42□□□□□ -0.26
PTCHD4-202ENST00000398738 ZNF326Q5BKZ1 582 aaKnown RBP13.41□□□□□ -0.26
PTCHD4-202ENST00000398738 SALL2Q9Y467 1007 aaPredicted RBP13.41□□□□□ -0.26
PTCHD4-202ENST00000398738 HS6ST3Q8IZP7 471 aa13.4□□□□□ -0.26
PTCHD4-202ENST00000398738 GTPBP6O43824 516 aaPredicted RBP13.4□□□□□ -0.26
PTCHD4-202ENST00000398738 MYT1LQ9UL68 1186 aa13.4□□□□□ -0.26
PTCHD4-202ENST00000398738 MTUS2Q5JR59 1369 aa13.4□□□□□ -0.27
PTCHD4-202ENST00000398738 LAS1LQ9Y4W2 734 aaKnown RBP13.39□□□□□ -0.27
PTCHD4-202ENST00000398738 BIVM-ERCC5R4GMW8 1640 aa13.39□□□□□ -0.27
PTCHD4-202ENST00000398738 IL27Q8NEV9 243 aa13.39□□□□□ -0.27
PTCHD4-202ENST00000398738 L3MBTL2Q969R5 705 aa13.38□□□□□ -0.27
PTCHD4-202ENST00000398738 CCDC18Q5T9S5 1454 aa13.38□□□□□ -0.27
PTCHD4-202ENST00000398738 TARBP1Q13395 1621 aaKnown RBP13.38□□□□□ -0.27
PTCHD4-202ENST00000398738 BCL11BQ9C0K0 894 aaPredicted RBP13.37□□□□□ -0.27
PTCHD4-202ENST00000398738 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
PTCHD4-202ENST00000398738 AKNAQ7Z591 1439 aa13.36□□□□□ -0.27
PTCHD4-202ENST00000398738 ERICH6BQ5W0A0 696 aa13.36□□□□□ -0.27
PTCHD4-202ENST00000398738 FHAD1B1AJZ9 1412 aa13.35□□□□□ -0.27
PTCHD4-202ENST00000398738 PTPRKQ15262 1439 aa13.35□□□□□ -0.27
PTCHD4-202ENST00000398738 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.35□□□□□ -0.27
PTCHD4-202ENST00000398738 ZFP91Q96JP5 570 aaPredicted RBP13.35□□□□□ -0.27
PTCHD4-202ENST00000398738 AQRO60306 1485 aaKnown RBP eCLIP13.35□□□□□ -0.279e-6■■□□□ 13.1
PTCHD4-202ENST00000398738 IPO9Q96P70 1041 aaKnown RBP13.35□□□□□ -0.27
PTCHD4-202ENST00000398738 PRR29P0C7W0 189 aa13.34□□□□□ -0.27
PTCHD4-202ENST00000398738 ZBED9Q6R2W3 1325 aa13.34□□□□□ -0.27
PTCHD4-202ENST00000398738 REM2Q8IYK8 340 aaPredicted RBP13.33□□□□□ -0.28
PTCHD4-202ENST00000398738 STK24Q9Y6E0 443 aa13.32□□□□□ -0.28
PTCHD4-202ENST00000398738 RIOK3O14730 519 aaKnown RBP13.32□□□□□ -0.28
PTCHD4-202ENST00000398738 FGD6Q6ZV73 1430 aa13.31□□□□□ -0.28
PTCHD4-202ENST00000398738 IFT140Q96RY7 1462 aa13.31□□□□□ -0.28
PTCHD4-202ENST00000398738 UACAQ9BZF9 1416 aa13.31□□□□□ -0.28
PTCHD4-202ENST00000398738 PITPNM1O00562 1244 aa13.29□□□□□ -0.28
PTCHD4-202ENST00000398738 NBPF8Q3BBV2 869 aa13.29□□□□□ -0.28
PTCHD4-202ENST00000398738 NEFMP07197 916 aa13.29□□□□□ -0.28
PTCHD4-202ENST00000398738 MPHOSPH9Q99550 1183 aa13.29□□□□□ -0.28
PTCHD4-202ENST00000398738 POLA1P09884 1462 aaPredicted RBP13.29□□□□□ -0.28
PTCHD4-202ENST00000398738 TSPYL2Q9H2G4 693 aaPredicted RBP13.28□□□□□ -0.28
PTCHD4-202ENST00000398738 CNTLNQ9NXG0 1405 aa13.28□□□□□ -0.28
PTCHD4-202ENST00000398738 PCF11O94913 1555 aaKnown RBP13.28□□□□□ -0.28
PTCHD4-202ENST00000398738 CCDC7Q96M83 1385 aa13.28□□□□□ -0.28
PTCHD4-202ENST00000398738 KIF7Q2M1P5 1343 aa13.27□□□□□ -0.29
PTCHD4-202ENST00000398738 CADPS2Q86UW7 1296 aa13.26□□□□□ -0.29
PTCHD4-202ENST00000398738 NAIPQ13075 1403 aa13.26□□□□□ -0.29
PTCHD4-202ENST00000398738 SKAP1Q86WV1 359 aa13.26□□□□□ -0.29
PTCHD4-202ENST00000398738 TMC1Q8TDI8 760 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms