RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 UGGT2Q9NYU1 1516 aa20.01■□□□□ 0.79
VPS9D1-201ENST00000389386 ANP32AP39687 249 aaKnown RBP20■□□□□ 0.79
VPS9D1-201ENST00000389386 ZBTB47Q9UFB7 747 aaPredicted RBP20■□□□□ 0.79
VPS9D1-201ENST00000389386 WASHC2AQ641Q2 1341 aa19.99■□□□□ 0.79
VPS9D1-201ENST00000389386 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.97■□□□□ 0.79
VPS9D1-201ENST00000389386 KIAA0556O60303 1618 aa19.96■□□□□ 0.79
VPS9D1-201ENST00000389386 FGD6Q6ZV73 1430 aa19.95■□□□□ 0.78
VPS9D1-201ENST00000389386 NCOA2Q15596 1464 aa19.92■□□□□ 0.78
VPS9D1-201ENST00000389386 TONSLQ96HA7 1378 aa19.92■□□□□ 0.78
VPS9D1-201ENST00000389386 PRG4Q92954 1404 aaPredicted RBP19.91■□□□□ 0.78
VPS9D1-201ENST00000389386 CCDC184Q52MB2 194 aa19.91■□□□□ 0.78
VPS9D1-201ENST00000389386 ZBED9Q6R2W3 1325 aa19.9■□□□□ 0.78
VPS9D1-201ENST00000389386 MAGI3Q5TCQ9 1506 aa19.9■□□□□ 0.78
VPS9D1-201ENST00000389386 PTPRKQ15262 1439 aa19.9■□□□□ 0.78
VPS9D1-201ENST00000389386 C11orf95C9JLR9 678 aaPredicted RBP19.89■□□□□ 0.77
VPS9D1-201ENST00000389386 CHIC2Q9UKJ5 165 aa19.89■□□□□ 0.77
VPS9D1-201ENST00000389386 CARMIL2Q6F5E8 1435 aa19.89■□□□□ 0.77
VPS9D1-201ENST00000389386 CDK13Q14004 1512 aaKnown RBP19.88■□□□□ 0.77
VPS9D1-201ENST00000389386 EIF5BO60841 1220 aaKnown RBP19.87■□□□□ 0.77
VPS9D1-201ENST00000389386 PLB1Q6P1J6 1458 aa19.86■□□□□ 0.77
VPS9D1-201ENST00000389386 WASHC2CQ9Y4E1 1318 aa19.86■□□□□ 0.77
VPS9D1-201ENST00000389386 MYOM3Q5VTT5 1437 aa19.84■□□□□ 0.77
VPS9D1-201ENST00000389386 USP35Q9P2H5 1018 aa19.84■□□□□ 0.77
VPS9D1-201ENST00000389386 RRP7BPQ9NSQ0 103 aa19.84■□□□□ 0.77
VPS9D1-201ENST00000389386 ERCC6L2Q5T890 1561 aa19.83■□□□□ 0.76
VPS9D1-201ENST00000389386 FAM9BQ8IZU0 186 aa19.82■□□□□ 0.76
VPS9D1-201ENST00000389386 EPRSP07814 1512 aaKnown RBP19.82■□□□□ 0.76
VPS9D1-201ENST00000389386 SUPT6HQ7KZ85 1726 aaKnown RBP19.81■□□□□ 0.76
VPS9D1-201ENST00000389386 EHBP1L1Q8N3D4 1523 aa19.8■□□□□ 0.76
VPS9D1-201ENST00000389386 HECW1Q76N89 1606 aa19.79■□□□□ 0.76
VPS9D1-201ENST00000389386 NEFMP07197 916 aa19.79■□□□□ 0.76
VPS9D1-201ENST00000389386 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.78■□□□□ 0.763e-7■□□□□ 10
VPS9D1-201ENST00000389386 NUP153P49790 1475 aaKnown RBP19.78■□□□□ 0.76
VPS9D1-201ENST00000389386 PTPRGP23470 1445 aa19.77■□□□□ 0.76
VPS9D1-201ENST00000389386 KDM5BQ9UGL1 1544 aa19.77■□□□□ 0.76
VPS9D1-201ENST00000389386 RNF123Q5XPI4 1314 aa19.77■□□□□ 0.76
VPS9D1-201ENST00000389386 PRKRIP1Q9H875 184 aaPredicted RBP19.77■□□□□ 0.76
VPS9D1-201ENST00000389386 CNTLNQ9NXG0 1405 aa19.77■□□□□ 0.76
VPS9D1-201ENST00000389386 RAPGEF6Q8TEU7 1601 aa19.77■□□□□ 0.75
VPS9D1-201ENST00000389386 CCDC18Q5T9S5 1454 aa19.77■□□□□ 0.75
VPS9D1-201ENST00000389386 HSPA5P11021 654 aaKnown RBP19.76■□□□□ 0.75
VPS9D1-201ENST00000389386 MRS2Q9HD23 443 aa19.76■□□□□ 0.75
VPS9D1-201ENST00000389386 SMG6Q86US8 1419 aaKnown RBP19.75■□□□□ 0.75
VPS9D1-201ENST00000389386 PTPN23Q9H3S7 1636 aa19.75■□□□□ 0.75
VPS9D1-201ENST00000389386 AKNAQ7Z591 1439 aa19.74■□□□□ 0.75
VPS9D1-201ENST00000389386 OSCARQ8IYS5 282 aa19.73■□□□□ 0.75
VPS9D1-201ENST00000389386 LAS1LQ9Y4W2 734 aaKnown RBP19.73■□□□□ 0.75
VPS9D1-201ENST00000389386 CLASP1Q7Z460 1538 aa19.72■□□□□ 0.75
VPS9D1-201ENST00000389386 NAIPQ13075 1403 aa19.72■□□□□ 0.75
VPS9D1-201ENST00000389386 ZNF644Q9H582 1327 aaPredicted RBP19.72■□□□□ 0.75
VPS9D1-201ENST00000389386 HFM1A2PYH4 1435 aa19.71■□□□□ 0.75
VPS9D1-201ENST00000389386 BRPF3Q9ULD4 1205 aa19.71■□□□□ 0.75
VPS9D1-201ENST00000389386 SHROOM2Q13796 1616 aa19.71■□□□□ 0.75
VPS9D1-201ENST00000389386 SLC24A1O60721 1099 aa19.7■□□□□ 0.74
VPS9D1-201ENST00000389386 UACAQ9BZF9 1416 aa19.69■□□□□ 0.74
VPS9D1-201ENST00000389386 ARHGEF11O15085 1522 aa19.69■□□□□ 0.74
VPS9D1-201ENST00000389386 PPM1GO15355 546 aaPredicted RBP19.68■□□□□ 0.74
VPS9D1-201ENST00000389386 PKNOX2Q96KN3 472 aa19.68■□□□□ 0.74
VPS9D1-201ENST00000389386 NUDCQ9Y266 331 aa19.67■□□□□ 0.74
VPS9D1-201ENST00000389386 NPM2Q86SE8 214 aaKnown RBP19.67■□□□□ 0.74
VPS9D1-201ENST00000389386 EIF4G2P78344 907 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS9D1-201ENST00000389386 ABCA8O94911 1581 aa19.64■□□□□ 0.73
VPS9D1-201ENST00000389386 FOXD1Q16676 465 aa19.63■□□□□ 0.73
VPS9D1-201ENST00000389386 ATP10BO94823 1461 aa19.62■□□□□ 0.73
VPS9D1-201ENST00000389386 CCDC7Q96M83 1385 aa19.62■□□□□ 0.73
VPS9D1-201ENST00000389386 ZNF777Q9ULD5 760 aaPredicted RBP19.62■□□□□ 0.73
VPS9D1-201ENST00000389386 GSE1Q14687 1217 aa19.62■□□□□ 0.73
VPS9D1-201ENST00000389386 KDM6BO15054 1643 aa19.61■□□□□ 0.73
VPS9D1-201ENST00000389386 NCOA1Q15788 1441 aa19.61■□□□□ 0.73
VPS9D1-201ENST00000389386 TCERG1O14776 1098 aaKnown RBP19.6■□□□□ 0.73
VPS9D1-201ENST00000389386 PLEKHD1A6NEE1 506 aa19.6■□□□□ 0.73
VPS9D1-201ENST00000389386 PDE4AP27815 886 aa19.6■□□□□ 0.73
VPS9D1-201ENST00000389386 TCOF1Q13428 1488 aaKnown RBP19.59■□□□□ 0.73
VPS9D1-201ENST00000389386 BACH2Q9BYV9 841 aa19.57■□□□□ 0.72
VPS9D1-201ENST00000389386 MIA2Q96PC5 1412 aa19.55■□□□□ 0.72
VPS9D1-201ENST00000389386 TROQ12816 1431 aaPredicted RBP19.55■□□□□ 0.72
VPS9D1-201ENST00000389386 CFDP1Q9UEE9 299 aaPredicted RBP19.53■□□□□ 0.72
VPS9D1-201ENST00000389386 KIF14Q15058 1648 aa19.53■□□□□ 0.72
VPS9D1-201ENST00000389386 RSPH6AQ9H0K4 717 aa19.53■□□□□ 0.72
VPS9D1-201ENST00000389386 MS4A1P11836 297 aa19.53■□□□□ 0.72
VPS9D1-201ENST00000389386 PLEKHG5O94827 1062 aa19.52■□□□□ 0.71
VPS9D1-201ENST00000389386 MPHOSPH9Q99550 1183 aa19.52■□□□□ 0.71
VPS9D1-201ENST00000389386 FRAT1Q92837 279 aaPredicted RBP19.51■□□□□ 0.71
VPS9D1-201ENST00000389386 ABCC5O15440 1437 aa19.5■□□□□ 0.71
VPS9D1-201ENST00000389386 DAPK1P53355 1430 aa19.5■□□□□ 0.71
VPS9D1-201ENST00000389386 DENND4BO75064 1496 aaPredicted RBP19.5■□□□□ 0.71
VPS9D1-201ENST00000389386 NFKBIBQ15653 356 aa19.49■□□□□ 0.71
VPS9D1-201ENST00000389386 ABCC2Q92887 1545 aa19.49■□□□□ 0.71
VPS9D1-201ENST00000389386 GCC2Q8IWJ2 1684 aa19.47■□□□□ 0.71
VPS9D1-201ENST00000389386 DDRGK1Q96HY6 314 aa19.46■□□□□ 0.71
VPS9D1-201ENST00000389386 KIF7Q2M1P5 1343 aa19.46■□□□□ 0.71
VPS9D1-201ENST00000389386 FAM43AQ8N2R8 423 aa19.45■□□□□ 0.7
VPS9D1-201ENST00000389386 EXOC6Q8TAG9 804 aa19.45■□□□□ 0.7
VPS9D1-201ENST00000389386 L3MBTL2Q969R5 705 aa19.43■□□□□ 0.7
VPS9D1-201ENST00000389386 GPATCH8Q9UKJ3 1502 aaKnown RBP19.43■□□□□ 0.7
VPS9D1-201ENST00000389386 CAMSAP2Q08AD1 1489 aa19.42■□□□□ 0.7
VPS9D1-201ENST00000389386 RRP1P56182 461 aaKnown RBP19.42■□□□□ 0.7
VPS9D1-201ENST00000389386 SLC4A1APQ9BWU0 796 aaKnown RBP19.42■□□□□ 0.7
VPS9D1-201ENST00000389386 DNMT1P26358 1616 aaKnown RBP19.41■□□□□ 0.7
VPS9D1-201ENST00000389386 DAXXQ9UER7 740 aaPredicted RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms