RNA–Protein interactions for RNA: ENST00000360565.7

SCAF1-201, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene SCAF1, Length 4,306 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-201ENST00000360565 EIF5BO60841 1220 aaKnown RBP21.31■■□□□ 1
SCAF1-201ENST00000360565 RALBP1Q15311 655 aa21.3■■□□□ 1
SCAF1-201ENST00000360565 RRBP1Q9P2E9 1410 aaKnown RBP21.3■■□□□ 1
SCAF1-201ENST00000360565 GAPVD1Q14C86 1478 aa21.29■■□□□ 1
SCAF1-201ENST00000360565 CFTRP13569 1480 aa21.29■■□□□ 1
SCAF1-201ENST00000360565 EFCAB2Q5VUJ9 269 aa21.28■■□□□ 1
SCAF1-201ENST00000360565 RCAN3Q9UKA8 241 aa21.28■■□□□ 1
SCAF1-201ENST00000360565 ST20-MTHFSA0A0A6YYL1 179 aa21.27■■□□□ 1
SCAF1-201ENST00000360565 NUDCQ9Y266 331 aa21.27■■□□□ 1
SCAF1-201ENST00000360565 BECN1Q14457 450 aa21.26■□□□□ 0.99
SCAF1-201ENST00000360565 FTSJ3Q8IY81 847 aaKnown RBP21.26■□□□□ 0.99
SCAF1-201ENST00000360565 KANK1Q14678 1352 aa21.26■□□□□ 0.99
SCAF1-201ENST00000360565 MYH16Q9H6N6 1097 aa21.25■□□□□ 0.99
SCAF1-201ENST00000360565 POGKQ9P215 609 aa21.25■□□□□ 0.99
SCAF1-201ENST00000360565 ZNF644Q9H582 1327 aaPredicted RBP21.24■□□□□ 0.99
SCAF1-201ENST00000360565 MYOM3Q5VTT5 1437 aa21.24■□□□□ 0.99
SCAF1-201ENST00000360565 ANP32BQ92688 251 aaKnown RBP21.23■□□□□ 0.99
SCAF1-201ENST00000360565 GGT6Q6P531 493 aa21.23■□□□□ 0.99
SCAF1-201ENST00000360565 MAPK8IP3Q9UPT6 1336 aa21.22■□□□□ 0.99
SCAF1-201ENST00000360565 U2SURPO15042 1029 aaKnown RBP21.22■□□□□ 0.99
SCAF1-201ENST00000360565 UACAQ9BZF9 1416 aa21.22■□□□□ 0.99
SCAF1-201ENST00000360565 NLRP13Q86W25 1043 aa21.22■□□□□ 0.99
SCAF1-201ENST00000360565 TOP2BQ02880 1626 aa21.21■□□□□ 0.99
SCAF1-201ENST00000360565 SAFB2Q14151 953 aaKnown RBP eCLIP21.2■□□□□ 0.98
SCAF1-201ENST00000360565 CASKIN1Q8WXD9 1431 aa21.2■□□□□ 0.98
SCAF1-201ENST00000360565 RSPH4AQ5TD94 716 aa21.19■□□□□ 0.98
SCAF1-201ENST00000360565 MORC1Q86VD1 984 aa21.19■□□□□ 0.98
SCAF1-201ENST00000360565 CUX1P39880 1505 aa21.19■□□□□ 0.98
SCAF1-201ENST00000360565 KIF3BO15066 747 aa21.15■□□□□ 0.98
SCAF1-201ENST00000360565 USP47Q96K76 1375 aa21.15■□□□□ 0.98
SCAF1-201ENST00000360565 NCOA2Q15596 1464 aa21.14■□□□□ 0.97
SCAF1-201ENST00000360565 SRPK2P78362 688 aaKnown RBP21.12■□□□□ 0.97
SCAF1-201ENST00000360565 ZBED9Q6R2W3 1325 aa21.12■□□□□ 0.97
SCAF1-201ENST00000360565 PLEKHG5O94827 1062 aa21.12■□□□□ 0.97
SCAF1-201ENST00000360565 AQRO60306 1485 aaKnown RBP eCLIP21.11■□□□□ 0.971e-6■■■■□ 23.2
SCAF1-201ENST00000360565 KIF15Q9NS87 1388 aa21.1■□□□□ 0.97
SCAF1-201ENST00000360565 SPAG9O60271 1321 aaKnown RBP21.1■□□□□ 0.97
SCAF1-201ENST00000360565 WASHC2AQ641Q2 1341 aa21.09■□□□□ 0.97
SCAF1-201ENST00000360565 C14orf37Q86TY3 774 aa21.09■□□□□ 0.97
SCAF1-201ENST00000360565 STK26Q9P289 416 aa21.09■□□□□ 0.97
SCAF1-201ENST00000360565 MYBBP1AQ9BQG0 1328 aaKnown RBP21.09■□□□□ 0.97
SCAF1-201ENST00000360565 CCDC144AA2RUR9 1427 aa21.08■□□□□ 0.97
SCAF1-201ENST00000360565 KIF7Q2M1P5 1343 aa21.08■□□□□ 0.97
SCAF1-201ENST00000360565 CCDC7Q96M83 1385 aa21.08■□□□□ 0.96
SCAF1-201ENST00000360565 PANK3Q9H999 370 aa21.08■□□□□ 0.96
SCAF1-201ENST00000360565 ARID4BQ4LE39 1312 aaPredicted RBP21.07■□□□□ 0.96
SCAF1-201ENST00000360565 TCERG1O14776 1098 aaKnown RBP21.07■□□□□ 0.96
SCAF1-201ENST00000360565 FYCO1Q9BQS8 1478 aa21.07■□□□□ 0.96
SCAF1-201ENST00000360565 PDE3BQ13370 1112 aa21.06■□□□□ 0.96
SCAF1-201ENST00000360565 NESP48681 1621 aa21.06■□□□□ 0.96
SCAF1-201ENST00000360565 PTPRGP23470 1445 aa21.06■□□□□ 0.96
SCAF1-201ENST00000360565 ZBTB7CA1YPR0 619 aa21.05■□□□□ 0.96
SCAF1-201ENST00000360565 DEKP35659 375 aaKnown RBP21.04■□□□□ 0.96
SCAF1-201ENST00000360565 GOLGA2Q08379 1002 aa21.04■□□□□ 0.96
SCAF1-201ENST00000360565 CCDC146Q8IYE0 955 aa21.03■□□□□ 0.96
SCAF1-201ENST00000360565 U2AF1L5P0DN76 240 aaPredicted RBP21.03■□□□□ 0.96
SCAF1-201ENST00000360565 MS4A1P11836 297 aa21.03■□□□□ 0.96
SCAF1-201ENST00000360565 U2AF1Q01081 240 aaKnown RBP eCLIP21.03■□□□□ 0.96
SCAF1-201ENST00000360565 HMGXB3Q12766 1538 aa21.03■□□□□ 0.96
SCAF1-201ENST00000360565 BICRAQ9NZM4 1560 aa21.02■□□□□ 0.96
SCAF1-201ENST00000360565 MLECQ14165 292 aa21.01■□□□□ 0.95
SCAF1-201ENST00000360565 TIAM1Q13009 1591 aa21■□□□□ 0.95
SCAF1-201ENST00000360565 POLA1P09884 1462 aaPredicted RBP20.99■□□□□ 0.95
SCAF1-201ENST00000360565 PLIN1O60240 522 aa20.97■□□□□ 0.95
SCAF1-201ENST00000360565 RTN4Q9NQC3 1192 aaKnown RBP20.97■□□□□ 0.95
SCAF1-201ENST00000360565 CNTLNQ9NXG0 1405 aa20.97■□□□□ 0.95
SCAF1-201ENST00000360565 TOPBP1Q92547 1522 aa20.96■□□□□ 0.95
SCAF1-201ENST00000360565 IPO9Q96P70 1041 aaKnown RBP20.96■□□□□ 0.95
SCAF1-201ENST00000360565 PNNQ9H307 717 aaKnown RBP20.96■□□□□ 0.95
SCAF1-201ENST00000360565 EXOC6Q8TAG9 804 aa20.96■□□□□ 0.95
SCAF1-201ENST00000360565 EIF3AQ14152 1382 aaKnown RBP20.96■□□□□ 0.95
SCAF1-201ENST00000360565 NUTM2DQ5VT03 806 aaPredicted RBP20.95■□□□□ 0.94
SCAF1-201ENST00000360565 HFM1A2PYH4 1435 aa20.94■□□□□ 0.94
SCAF1-201ENST00000360565 ANKRD50Q9ULJ7 1429 aa20.94■□□□□ 0.94
SCAF1-201ENST00000360565 TRAK1Q9UPV9 953 aa20.94■□□□□ 0.94
SCAF1-201ENST00000360565 NBPF8Q3BBV2 869 aa20.93■□□□□ 0.94
SCAF1-201ENST00000360565 GOLGA6L22H0YM25 854 aa20.93■□□□□ 0.94
SCAF1-201ENST00000360565 SOX12O15370 315 aa20.93■□□□□ 0.94
SCAF1-201ENST00000360565 RRP1P56182 461 aaKnown RBP20.92■□□□□ 0.94
SCAF1-201ENST00000360565 EFCAB5A4FU69 1503 aa20.92■□□□□ 0.94
SCAF1-201ENST00000360565 WDR97A6NE52 1622 aa20.91■□□□□ 0.94
SCAF1-201ENST00000360565 CLUAP1Q96AJ1 413 aa20.91■□□□□ 0.94
SCAF1-201ENST00000360565 CHMP4BQ9H444 224 aaKnown RBP20.9■□□□□ 0.94
SCAF1-201ENST00000360565 HDGFL2Q7Z4V5 671 aaPredicted RBP20.89■□□□□ 0.94
SCAF1-201ENST00000360565 WASHC2CQ9Y4E1 1318 aa20.89■□□□□ 0.93
SCAF1-201ENST00000360565 NCLP19338 710 aaKnown RBP20.88■□□□□ 0.93
SCAF1-201ENST00000360565 GRIN2BQ13224 1484 aa20.88■□□□□ 0.93
SCAF1-201ENST00000360565 SPRYD3Q8NCJ5 442 aa20.87■□□□□ 0.93
SCAF1-201ENST00000360565 TRIM44Q96DX7 344 aaPredicted RBP20.86■□□□□ 0.93
SCAF1-201ENST00000360565 RRP7AQ9Y3A4 280 aaKnown RBP20.86■□□□□ 0.93
SCAF1-201ENST00000360565 CASC1Q6TDU7 716 aa20.85■□□□□ 0.93
SCAF1-201ENST00000360565 PRDM2Q13029 1718 aa20.85■□□□□ 0.93
SCAF1-201ENST00000360565 CENPJQ9HC77 1338 aaPredicted RBP20.85■□□□□ 0.93
SCAF1-201ENST00000360565 RWDD1Q9H446 243 aaPredicted RBP20.84■□□□□ 0.93
SCAF1-201ENST00000360565 PDE4AP27815 886 aa20.84■□□□□ 0.93
SCAF1-201ENST00000360565 CCDC184Q52MB2 194 aa20.84■□□□□ 0.93
SCAF1-201ENST00000360565 NAIPQ13075 1403 aa20.83■□□□□ 0.93
SCAF1-201ENST00000360565 HSP90AB1P08238 724 aaKnown RBP20.83■□□□□ 0.93
SCAF1-201ENST00000360565 CRBNQ96SW2 442 aa20.83■□□□□ 0.93
SCAF1-201ENST00000360565 IPO8O15397 1037 aaKnown RBP20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms