RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 ITGAEP38570 1179 aa33.13■■■□□ 2.89
HOXA4-201ENST00000360046 FAM69CQ0P6D2 419 aa33.13■■■□□ 2.89
HOXA4-201ENST00000360046 ZNF777Q9ULD5 760 aaPredicted RBP33.13■■■□□ 2.89
HOXA4-201ENST00000360046 ARHGAP5Q13017 1502 aa33.12■■■□□ 2.89
HOXA4-201ENST00000360046 CAMSAP2Q08AD1 1489 aa33.1■■■□□ 2.89
HOXA4-201ENST00000360046 ZNF644Q9H582 1327 aaPredicted RBP33.09■■■□□ 2.89
HOXA4-201ENST00000360046 PLCH2O75038 1416 aa33.08■■■□□ 2.89
HOXA4-201ENST00000360046 DIP2BQ9P265 1576 aa33.06■■■□□ 2.88
HOXA4-201ENST00000360046 CD109Q6YHK3 1445 aa33.05■■■□□ 2.88
HOXA4-201ENST00000360046 GLI2P10070 1586 aa33.03■■■□□ 2.88
HOXA4-201ENST00000360046 ARAP3Q8WWN8 1544 aa33.02■■■□□ 2.88
HOXA4-201ENST00000360046 SAMD9LQ8IVG5 1584 aa33.02■■■□□ 2.88
HOXA4-201ENST00000360046 EFCAB2Q5VUJ9 269 aa33.01■■■□□ 2.87
HOXA4-201ENST00000360046 DNMT1P26358 1616 aaKnown RBP32.96■■■□□ 2.87
HOXA4-201ENST00000360046 MAP3K4Q9Y6R4 1608 aa32.94■■■□□ 2.86
HOXA4-201ENST00000360046 TRHP20396 242 aaPredicted RBP32.94■■■□□ 2.86
HOXA4-201ENST00000360046 FANCAO15360 1455 aa32.93■■■□□ 2.86
HOXA4-201ENST00000360046 KIF13AQ9H1H9 1805 aa32.92■■■□□ 2.86
HOXA4-201ENST00000360046 DAPK1P53355 1430 aa32.92■■■□□ 2.86
HOXA4-201ENST00000360046 PTPRKQ15262 1439 aa32.91■■■□□ 2.86
HOXA4-201ENST00000360046 PLEKHH2Q8IVE3 1493 aa32.9■■■□□ 2.86
HOXA4-201ENST00000360046 SYCP2Q9BX26 1530 aa32.9■■■□□ 2.86
HOXA4-201ENST00000360046 ABCC5O15440 1437 aa32.88■■■□□ 2.85
HOXA4-201ENST00000360046 HNRNPMP52272 730 aaKnown RBP eCLIP32.88■■■□□ 2.85
HOXA4-201ENST00000360046 CROCC2H7BZ55 1655 aa32.87■■■□□ 2.85
HOXA4-201ENST00000360046 ABCC1P33527 1531 aa32.86■■■□□ 2.85
HOXA4-201ENST00000360046 ARHGEF5Q12774 1597 aa32.86■■■□□ 2.85
HOXA4-201ENST00000360046 TSPOAP1O95153 1857 aa32.86■■■□□ 2.85
HOXA4-201ENST00000360046 CFAP74Q9C0B2 1584 aa32.86■■■□□ 2.85
HOXA4-201ENST00000360046 KIAA1107Q9UPP5 1409 aa32.84■■■□□ 2.85
HOXA4-201ENST00000360046 MBD5Q9P267 1494 aa32.84■■■□□ 2.85
HOXA4-201ENST00000360046 CHIC2Q9UKJ5 165 aa32.82■■■□□ 2.85
HOXA4-201ENST00000360046 AKNAQ7Z591 1439 aa32.81■■■□□ 2.84
HOXA4-201ENST00000360046 CCDC141Q6ZP82 1450 aa32.81■■■□□ 2.84
HOXA4-201ENST00000360046 ARHGEF12Q9NZN5 1544 aa32.8■■■□□ 2.84
HOXA4-201ENST00000360046 ADGRL1O94910 1474 aa32.79■■■□□ 2.84
HOXA4-201ENST00000360046 ADGBQ8N7X0 1667 aa32.76■■■□□ 2.84
HOXA4-201ENST00000360046 RSPH4AQ5TD94 716 aa32.76■■■□□ 2.83
HOXA4-201ENST00000360046 NEO1Q92859 1461 aa32.76■■■□□ 2.83
HOXA4-201ENST00000360046 SHANK2Q9UPX8 1470 aa32.75■■■□□ 2.83
HOXA4-201ENST00000360046 TEX14Q8IWB6 1497 aa32.74■■■□□ 2.83
HOXA4-201ENST00000360046 SCAPERQ9BY12 1400 aa32.74■■■□□ 2.83
HOXA4-201ENST00000360046 TSPY4P0CV99 314 aa32.74■■■□□ 2.83
HOXA4-201ENST00000360046 TSPY10P0CW01 314 aa32.74■■■□□ 2.83
HOXA4-201ENST00000360046 PPRC1Q5VV67 1664 aaKnown RBP32.73■■■□□ 2.83
HOXA4-201ENST00000360046 C9orf84Q5VXU9 1444 aa32.73■■■□□ 2.83
HOXA4-201ENST00000360046 HFM1A2PYH4 1435 aa32.7■■■□□ 2.83
HOXA4-201ENST00000360046 SETD5Q9C0A6 1442 aa32.7■■■□□ 2.83
HOXA4-201ENST00000360046 ROCK1Q13464 1354 aa32.7■■■□□ 2.83
HOXA4-201ENST00000360046 RRP7BPQ9NSQ0 103 aa32.7■■■□□ 2.83
HOXA4-201ENST00000360046 TRAPPC8Q9Y2L5 1435 aa32.7■■■□□ 2.82
HOXA4-201ENST00000360046 GCC2Q8IWJ2 1684 aa32.67■■■□□ 2.82
HOXA4-201ENST00000360046 ADGRL2O95490 1459 aa32.67■■■□□ 2.82
HOXA4-201ENST00000360046 AFAP1Q8N556 730 aa32.66■■■□□ 2.82
HOXA4-201ENST00000360046 NAIPQ13075 1403 aa32.66■■■□□ 2.82
HOXA4-201ENST00000360046 MAST1Q9Y2H9 1570 aa32.65■■■□□ 2.82
HOXA4-201ENST00000360046 ANKRD30AQ9BXX3 1397 aa32.64■■■□□ 2.82
HOXA4-201ENST00000360046 RAB3GAP2Q9H2M9 1393 aa32.64■■■□□ 2.82
HOXA4-201ENST00000360046 NCOA1Q15788 1441 aa32.62■■■□□ 2.81
HOXA4-201ENST00000360046 DENND4BO75064 1496 aaPredicted RBP32.6■■■□□ 2.81
HOXA4-201ENST00000360046 MYT1LQ9UL68 1186 aa32.6■■■□□ 2.81
HOXA4-201ENST00000360046 ZNF518AQ6AHZ1 1483 aa32.58■■■□□ 2.81
HOXA4-201ENST00000360046 RAPGEF3O95398 923 aa32.58■■■□□ 2.81
HOXA4-201ENST00000360046 POGZQ7Z3K3 1410 aa32.58■■■□□ 2.81
HOXA4-201ENST00000360046 SPAG9O60271 1321 aaKnown RBP32.57■■■□□ 2.8
HOXA4-201ENST00000360046 PLXNC1O60486 1568 aa32.54■■■□□ 2.8
HOXA4-201ENST00000360046 ZFYVE16Q7Z3T8 1539 aa32.54■■■□□ 2.8
HOXA4-201ENST00000360046 KIF15Q9NS87 1388 aa32.53■■■□□ 2.8
HOXA4-201ENST00000360046 INO80Q9ULG1 1556 aaPredicted RBP32.51■■■□□ 2.8
HOXA4-201ENST00000360046 KDM6BO15054 1643 aa32.51■■■□□ 2.8
HOXA4-201ENST00000360046 ATP7AQ04656 1500 aa32.5■■■□□ 2.79
HOXA4-201ENST00000360046 KDM5CP41229 1560 aa32.5■■■□□ 2.79
HOXA4-201ENST00000360046 RTEL1-TNFRSF6BF6WH68 1400 aa32.5■■■□□ 2.79
HOXA4-201ENST00000360046 RICTORQ6R327 1708 aa32.49■■■□□ 2.79
HOXA4-201ENST00000360046 HRCP23327 699 aa32.47■■■□□ 2.79
HOXA4-201ENST00000360046 CCER1Q8TC90 406 aaPredicted RBP32.45■■■□□ 2.78
HOXA4-201ENST00000360046 ANKRD50Q9ULJ7 1429 aa32.44■■■□□ 2.78
HOXA4-201ENST00000360046 HECW2Q9P2P5 1572 aa32.44■■■□□ 2.78
HOXA4-201ENST00000360046 COL17A1Q9UMD9 1497 aaPredicted RBP32.44■■■□□ 2.78
HOXA4-201ENST00000360046 KIDINS220Q9ULH0 1771 aa32.43■■■□□ 2.78
HOXA4-201ENST00000360046 FRMPD1Q5SYB0 1578 aa32.42■■■□□ 2.78
HOXA4-201ENST00000360046 DUOX2Q9NRD8 1548 aa32.4■■■□□ 2.78
HOXA4-201ENST00000360046 MLH3Q9UHC1 1453 aa32.4■■■□□ 2.78
HOXA4-201ENST00000360046 DHX57Q6P158 1386 aaKnown RBP32.35■■■□□ 2.77
HOXA4-201ENST00000360046 ZMYM4Q5VZL5 1548 aa32.33■■■□□ 2.77
HOXA4-201ENST00000360046 TRIM52Q96A61 297 aa32.33■■■□□ 2.77
HOXA4-201ENST00000360046 ERBINQ96RT1 1412 aa32.32■■■□□ 2.76
HOXA4-201ENST00000360046 ABCA6Q8N139 1617 aa32.31■■■□□ 2.76
HOXA4-201ENST00000360046 ACIN1Q9UKV3 1341 aaKnown RBP32.3■■■□□ 2.76
HOXA4-201ENST00000360046 YEATS2Q9ULM3 1422 aa32.27■■■□□ 2.76
HOXA4-201ENST00000360046 MAGI2Q86UL8 1455 aa32.25■■■□□ 2.75
HOXA4-201ENST00000360046 DIP2CQ9Y2E4 1556 aa32.25■■■□□ 2.75
HOXA4-201ENST00000360046 DHX29Q7Z478 1369 aaKnown RBP32.23■■■□□ 2.75
HOXA4-201ENST00000360046 A2MP01023 1474 aa32.23■■■□□ 2.75
HOXA4-201ENST00000360046 EIF2AK4Q9P2K8 1649 aaKnown RBP32.2■■■□□ 2.74
HOXA4-201ENST00000360046 UNC13BO14795 1591 aa32.19■■■□□ 2.74
HOXA4-201ENST00000360046 NUP155O75694 1391 aa32.16■■■□□ 2.74
HOXA4-201ENST00000360046 KIF3BO15066 747 aa32.14■■■□□ 2.74
HOXA4-201ENST00000360046 ATP10AO60312 1499 aa32.14■■■□□ 2.74
HOXA4-201ENST00000360046 KDM5DQ9BY66 1539 aa32.14■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms