RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 CFDP1Q9UEE9 299 aaPredicted RBP6.24□□□□□ -1.41
LIG4-201ENST00000356922 CCNB3Q8WWL7 1395 aa6.24□□□□□ -1.41
LIG4-201ENST00000356922 MAP3K4Q9Y6R4 1608 aa6.24□□□□□ -1.41
LIG4-201ENST00000356922 AFAP1Q8N556 730 aa6.23□□□□□ -1.41
LIG4-201ENST00000356922 GLI2P10070 1586 aa6.23□□□□□ -1.41
LIG4-201ENST00000356922 SUPT6HQ7KZ85 1726 aaKnown RBP6.23□□□□□ -1.41
LIG4-201ENST00000356922 MYOM3Q5VTT5 1437 aa6.22□□□□□ -1.41
LIG4-201ENST00000356922 PTPRKQ15262 1439 aa6.22□□□□□ -1.41
LIG4-201ENST00000356922 ITGAEP38570 1179 aa6.22□□□□□ -1.41
LIG4-201ENST00000356922 FANCAO15360 1455 aa6.22□□□□□ -1.41
LIG4-201ENST00000356922 FGD6Q6ZV73 1430 aa6.21□□□□□ -1.41
LIG4-201ENST00000356922 FAM50AQ14320 339 aaKnown RBP6.21□□□□□ -1.41
LIG4-201ENST00000356922 SAMD9LQ8IVG5 1584 aa6.21□□□□□ -1.42
LIG4-201ENST00000356922 EFCAB2Q5VUJ9 269 aa6.21□□□□□ -1.42
LIG4-201ENST00000356922 ARHGAP5Q13017 1502 aa6.21□□□□□ -1.42
LIG4-201ENST00000356922 TRAPPC8Q9Y2L5 1435 aa6.21□□□□□ -1.42
LIG4-201ENST00000356922 MBD5Q9P267 1494 aa6.2□□□□□ -1.42
LIG4-201ENST00000356922 AKNAQ7Z591 1439 aa6.2□□□□□ -1.42
LIG4-201ENST00000356922 PREX2Q70Z35 1606 aa6.2□□□□□ -1.42
LIG4-201ENST00000356922 CHIC2Q9UKJ5 165 aa6.2□□□□□ -1.42
LIG4-201ENST00000356922 MYO5CQ9NQX4 1742 aa6.2□□□□□ -1.42
LIG4-201ENST00000356922 SCAPERQ9BY12 1400 aa6.2□□□□□ -1.42
LIG4-201ENST00000356922 RRBP1Q9P2E9 1410 aaKnown RBP6.19□□□□□ -1.42
LIG4-201ENST00000356922 CAMSAP2Q08AD1 1489 aa6.19□□□□□ -1.42
LIG4-201ENST00000356922 SYCP2Q9BX26 1530 aa6.18□□□□□ -1.42
LIG4-201ENST00000356922 PTPN23Q9H3S7 1636 aa6.18□□□□□ -1.42
LIG4-201ENST00000356922 ABCC5O15440 1437 aa6.18□□□□□ -1.42
LIG4-201ENST00000356922 MIA2Q96PC5 1412 aa6.18□□□□□ -1.42
LIG4-201ENST00000356922 ADGRL1O94910 1474 aa6.18□□□□□ -1.42
LIG4-201ENST00000356922 TCOF1Q13428 1488 aaKnown RBP6.17□□□□□ -1.42
LIG4-201ENST00000356922 ABCC1P33527 1531 aa6.17□□□□□ -1.42
LIG4-201ENST00000356922 PCGF6Q9BYE7 350 aa6.16□□□□□ -1.42
LIG4-201ENST00000356922 ARAP3Q8WWN8 1544 aa6.16□□□□□ -1.42
LIG4-201ENST00000356922 NEO1Q92859 1461 aa6.16□□□□□ -1.42
LIG4-201ENST00000356922 FRMPD1Q5SYB0 1578 aa6.16□□□□□ -1.42
LIG4-201ENST00000356922 RRP7BPQ9NSQ0 103 aa6.16□□□□□ -1.42
LIG4-201ENST00000356922 YEATS2Q9ULM3 1422 aa6.16□□□□□ -1.42
LIG4-201ENST00000356922 ITSN2Q9NZM3 1697 aa6.15□□□□□ -1.42
LIG4-201ENST00000356922 KIAA1107Q9UPP5 1409 aa6.15□□□□□ -1.42
LIG4-201ENST00000356922 DAPK1P53355 1430 aa6.15□□□□□ -1.42
LIG4-201ENST00000356922 TRIM26Q12899 539 aaPredicted RBP6.15□□□□□ -1.43
LIG4-201ENST00000356922 POGZQ7Z3K3 1410 aa6.14□□□□□ -1.43
LIG4-201ENST00000356922 DENND4BO75064 1496 aaPredicted RBP6.14□□□□□ -1.43
LIG4-201ENST00000356922 TEX14Q8IWB6 1497 aa6.14□□□□□ -1.43
LIG4-201ENST00000356922 RICTORQ6R327 1708 aa6.14□□□□□ -1.43
LIG4-201ENST00000356922 SIGLEC1Q9BZZ2 1709 aa6.13□□□□□ -1.43
LIG4-201ENST00000356922 SPAG9O60271 1321 aaKnown RBP6.13□□□□□ -1.43
LIG4-201ENST00000356922 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.13□□□□□ -1.43
LIG4-201ENST00000356922 NCOA1Q15788 1441 aa6.13□□□□□ -1.43
LIG4-201ENST00000356922 DNMT1P26358 1616 aaKnown RBP6.13□□□□□ -1.43
LIG4-201ENST00000356922 KIDINS220Q9ULH0 1771 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 CCDC141Q6ZP82 1450 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 TSPY4P0CV99 314 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 TSPY10P0CW01 314 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 KDM6BO15054 1643 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 MYT1LQ9UL68 1186 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 C9orf84Q5VXU9 1444 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 KDM5CP41229 1560 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 ZNF518AQ6AHZ1 1483 aa6.12□□□□□ -1.43
LIG4-201ENST00000356922 ARHGEF5Q12774 1597 aa6.11□□□□□ -1.43
LIG4-201ENST00000356922 SENP3Q9H4L4 574 aaPredicted RBP6.11□□□□□ -1.43
LIG4-201ENST00000356922 ZFYVE16Q7Z3T8 1539 aa6.11□□□□□ -1.43
LIG4-201ENST00000356922 PLEKHH2Q8IVE3 1493 aa6.11□□□□□ -1.43
LIG4-201ENST00000356922 RSPH4AQ5TD94 716 aa6.1□□□□□ -1.43
LIG4-201ENST00000356922 MLH3Q9UHC1 1453 aa6.1□□□□□ -1.43
LIG4-201ENST00000356922 NAIPQ13075 1403 aa6.1□□□□□ -1.43
LIG4-201ENST00000356922 CFAP74Q9C0B2 1584 aa6.1□□□□□ -1.43
LIG4-201ENST00000356922 ABCA6Q8N139 1617 aa6.1□□□□□ -1.43
LIG4-201ENST00000356922 ATP7AQ04656 1500 aa6.1□□□□□ -1.43
LIG4-201ENST00000356922 INO80Q9ULG1 1556 aaPredicted RBP6.09□□□□□ -1.43
LIG4-201ENST00000356922 KIF15Q9NS87 1388 aa6.09□□□□□ -1.43
LIG4-201ENST00000356922 CROCC2H7BZ55 1655 aa6.09□□□□□ -1.43
LIG4-201ENST00000356922 DIP2CQ9Y2E4 1556 aa6.09□□□□□ -1.44
LIG4-201ENST00000356922 MLECQ14165 292 aa6.09□□□□□ -1.44
LIG4-201ENST00000356922 ZMYM4Q5VZL5 1548 aa6.08□□□□□ -1.44
LIG4-201ENST00000356922 RTEL1-TNFRSF6BF6WH68 1400 aa6.08□□□□□ -1.44
LIG4-201ENST00000356922 KIF3BO15066 747 aa6.08□□□□□ -1.44
LIG4-201ENST00000356922 HECW2Q9P2P5 1572 aa6.08□□□□□ -1.44
LIG4-201ENST00000356922 ADGRL2O95490 1459 aa6.08□□□□□ -1.44
LIG4-201ENST00000356922 DHX29Q7Z478 1369 aaKnown RBP6.08□□□□□ -1.44
LIG4-201ENST00000356922 SHANK2Q9UPX8 1470 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 GGT6Q6P531 493 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 ANKRD30AQ9BXX3 1397 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 MAST1Q9Y2H9 1570 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 ROCK1Q13464 1354 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 RAB3GAP2Q9H2M9 1393 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 HFM1A2PYH4 1435 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 ADGBQ8N7X0 1667 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.07□□□□□ -1.44
LIG4-201ENST00000356922 ANKRD50Q9ULJ7 1429 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 ATP10AO60312 1499 aa6.07□□□□□ -1.44
LIG4-201ENST00000356922 A2MP01023 1474 aa6.06□□□□□ -1.44
LIG4-201ENST00000356922 MAGI2Q86UL8 1455 aa6.06□□□□□ -1.44
LIG4-201ENST00000356922 FOXD1Q16676 465 aa6.06□□□□□ -1.44
LIG4-201ENST00000356922 ARID4BQ4LE39 1312 aaPredicted RBP6.05□□□□□ -1.44
LIG4-201ENST00000356922 SETD5Q9C0A6 1442 aa6.05□□□□□ -1.44
LIG4-201ENST00000356922 PLXNC1O60486 1568 aa6.05□□□□□ -1.44
LIG4-201ENST00000356922 ARHGEF40Q8TER5 1519 aa6.05□□□□□ -1.44
LIG4-201ENST00000356922 KDM4FA0A1W2PPD8 638 aa6.04□□□□□ -1.44
LIG4-201ENST00000356922 CEBPAP49715 358 aaPredicted RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms