RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ATAD2BQ9ULI0 1458 aa4.21□□□□□ -1.74
VPS54-202ENST00000354504 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.2□□□□□ -1.74
VPS54-202ENST00000354504 POTEGQ6S5H5 508 aa4.2□□□□□ -1.74
VPS54-202ENST00000354504 BBXQ8WY36 941 aaPredicted RBP4.19□□□□□ -1.74
VPS54-202ENST00000354504 SEC24BO95487 1268 aa4.19□□□□□ -1.74
VPS54-202ENST00000354504 ABCC8Q09428 1581 aa4.19□□□□□ -1.74
VPS54-202ENST00000354504 COLQQ9Y215 455 aaPredicted RBP4.18□□□□□ -1.74
VPS54-202ENST00000354504 PSEN1P49768 467 aa4.18□□□□□ -1.74
VPS54-202ENST00000354504 PYGBP11216 843 aa4.17□□□□□ -1.74
VPS54-202ENST00000354504 DCAF8Q5TAQ9 597 aa4.17□□□□□ -1.74
VPS54-202ENST00000354504 TRPC6Q9Y210 931 aa4.17□□□□□ -1.74
VPS54-202ENST00000354504 TOP2BQ02880 1626 aa4.17□□□□□ -1.74
VPS54-202ENST00000354504 GTPBP6O43824 516 aaPredicted RBP4.17□□□□□ -1.74
VPS54-202ENST00000354504 NCAPD3P42695 1498 aa4.16□□□□□ -1.74
VPS54-202ENST00000354504 SLC34A2O95436 690 aa4.16□□□□□ -1.74
VPS54-202ENST00000354504 CC2D2AQ9P2K1 1620 aa4.16□□□□□ -1.74
VPS54-202ENST00000354504 VGFO15240 615 aaPredicted RBP4.16□□□□□ -1.74
VPS54-202ENST00000354504 TPRNQ4KMQ1 711 aa4.16□□□□□ -1.74
VPS54-202ENST00000354504 VSIG10Q8N0Z9 540 aa4.15□□□□□ -1.75
VPS54-202ENST00000354504 HOXB1P14653 301 aaPredicted RBP4.14□□□□□ -1.75
VPS54-202ENST00000354504 MKRN3Q13064 507 aaKnown RBP4.14□□□□□ -1.75
VPS54-202ENST00000354504 CADPS2Q86UW7 1296 aa4.14□□□□□ -1.75
VPS54-202ENST00000354504 DOK7Q18PE1 504 aa4.14□□□□□ -1.75
VPS54-202ENST00000354504 HS6ST3Q8IZP7 471 aa4.14□□□□□ -1.75
VPS54-202ENST00000354504 SPRYD3Q8NCJ5 442 aa4.14□□□□□ -1.75
VPS54-202ENST00000354504 LRRIQ1Q96JM4 1722 aa4.14□□□□□ -1.75
VPS54-202ENST00000354504 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.13□□□□□ -1.75
VPS54-202ENST00000354504 ZFP91Q96JP5 570 aaPredicted RBP4.13□□□□□ -1.75
VPS54-202ENST00000354504 KIF21AQ7Z4S6 1674 aa4.12□□□□□ -1.75
VPS54-202ENST00000354504 KIF21BO75037 1637 aa4.12□□□□□ -1.75
VPS54-202ENST00000354504 RIOK3O14730 519 aaKnown RBP4.12□□□□□ -1.75
VPS54-202ENST00000354504 ST18O60284 1047 aa4.12□□□□□ -1.75
VPS54-202ENST00000354504 SLAIN1Q8ND83 568 aa4.12□□□□□ -1.75
VPS54-202ENST00000354504 CUX1P39880 1505 aa4.12□□□□□ -1.75
VPS54-202ENST00000354504 STK25O00506 426 aa4.11□□□□□ -1.75
VPS54-202ENST00000354504 BCANQ96GW7 911 aa4.11□□□□□ -1.75
VPS54-202ENST00000354504 BCL11BQ9C0K0 894 aaPredicted RBP4.11□□□□□ -1.75
VPS54-202ENST00000354504 BOLA1Q9Y3E2 137 aa4.11□□□□□ -1.75
VPS54-202ENST00000354504 RUSC2Q8N2Y8 1516 aa4.11□□□□□ -1.75
VPS54-202ENST00000354504 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.1□□□□□ -1.75
VPS54-202ENST00000354504 CFTRP13569 1480 aa4.1□□□□□ -1.75
VPS54-202ENST00000354504 SUPT5HO00267 1087 aaKnown RBP4.1□□□□□ -1.75
VPS54-202ENST00000354504 HOXB3P14651 431 aaPredicted RBP4.1□□□□□ -1.75
VPS54-202ENST00000354504 PCDHB8Q9UN66 801 aa4.1□□□□□ -1.75
VPS54-202ENST00000354504 PSDA5PKW4 1024 aaPredicted RBP4.1□□□□□ -1.75
VPS54-202ENST00000354504 RGS20O76081 388 aa4.1□□□□□ -1.75
VPS54-202ENST00000354504 PBX2P40425 430 aa4.1□□□□□ -1.75
VPS54-202ENST00000354504 KIF3CO14782 793 aa4.09□□□□□ -1.75
VPS54-202ENST00000354504 NLRP6P59044 892 aa4.09□□□□□ -1.75
VPS54-202ENST00000354504 PPP1R37O75864 691 aa4.09□□□□□ -1.76
VPS54-202ENST00000354504 IFFO2Q5TF58 517 aa4.09□□□□□ -1.76
VPS54-202ENST00000354504 CDAN1Q8IWY9 1227 aa4.09□□□□□ -1.76
VPS54-202ENST00000354504 BAZ1BQ9UIG0 1483 aaKnown RBP4.08□□□□□ -1.76
VPS54-202ENST00000354504 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.08□□□□□ -1.768e-8■■■□□ 14.9
VPS54-202ENST00000354504 RIMBP2O15034 1052 aa4.08□□□□□ -1.76
VPS54-202ENST00000354504 TARBP1Q13395 1621 aaKnown RBP4.07□□□□□ -1.76
VPS54-202ENST00000354504 ABCA5Q8WWZ7 1642 aa4.07□□□□□ -1.76
VPS54-202ENST00000354504 GOLGA2Q08379 1002 aa4.07□□□□□ -1.76
VPS54-202ENST00000354504 FBXO22Q8NEZ5 403 aa4.07□□□□□ -1.76
VPS54-202ENST00000354504 SLC4A5Q9BY07 1137 aa4.07□□□□□ -1.76
VPS54-202ENST00000354504 STK24Q9Y6E0 443 aa4.07□□□□□ -1.76
VPS54-202ENST00000354504 C3orf67Q6ZVT6 689 aa4.06□□□□□ -1.76
VPS54-202ENST00000354504 ZNF687Q8N1G0 1237 aa4.06□□□□□ -1.76
VPS54-202ENST00000354504 RYDENQ9NUL5 291 aaKnown RBP4.06□□□□□ -1.76
VPS54-202ENST00000354504 SPNS2Q8IVW8 549 aa4.06□□□□□ -1.76
VPS54-202ENST00000354504 MFRPQ9BY79 579 aa4.06□□□□□ -1.76
VPS54-202ENST00000354504 FAM163AQ96GL9 167 aaPredicted RBP4.05□□□□□ -1.76
VPS54-202ENST00000354504 PBRM1Q86U86 1689 aa4.05□□□□□ -1.76
VPS54-202ENST00000354504 CTTNBP2Q8WZ74 1663 aa4.05□□□□□ -1.76
VPS54-202ENST00000354504 SOGA1O94964 1423 aa4.05□□□□□ -1.76
VPS54-202ENST00000354504 KDM4FA0A1W2PPD8 638 aa4.04□□□□□ -1.76
VPS54-202ENST00000354504 THOC2Q8NI27 1593 aaKnown RBP4.04□□□□□ -1.76
VPS54-202ENST00000354504 KCNV2Q8TDN2 545 aa4.04□□□□□ -1.76
VPS54-202ENST00000354504 LAMC3Q9Y6N6 1575 aa4.04□□□□□ -1.76
VPS54-202ENST00000354504 TK2O00142 265 aa4.03□□□□□ -1.76
VPS54-202ENST00000354504 ERICH3Q5RHP9 1530 aa4.03□□□□□ -1.76
VPS54-202ENST00000354504 G3V3G9 751 aa4.03□□□□□ -1.76
VPS54-202ENST00000354504 ONECUT3O60422 494 aaPredicted RBP4.03□□□□□ -1.76
VPS54-202ENST00000354504 MMRN1Q13201 1228 aa4.03□□□□□ -1.76
VPS54-202ENST00000354504 MICALL2Q8IY33 904 aa4.03□□□□□ -1.76
VPS54-202ENST00000354504 PRXQ9BXM0 1461 aa4.03□□□□□ -1.76
VPS54-202ENST00000354504 DNMBPQ6XZF7 1577 aa4.02□□□□□ -1.77
VPS54-202ENST00000354504 WRNQ14191 1432 aaPredicted RBP eCLIP4.02□□□□□ -1.77
VPS54-202ENST00000354504 GPR153Q6NV75 609 aa4.02□□□□□ -1.77
VPS54-202ENST00000354504 URB2Q14146 1524 aaKnown RBP4.01□□□□□ -1.77
VPS54-202ENST00000354504 MS4A4AQ96JQ5 239 aa4.01□□□□□ -1.77
VPS54-202ENST00000354504 CFAP43Q8NDM7 1665 aa4.01□□□□□ -1.77
VPS54-202ENST00000354504 NESP48681 1621 aa4□□□□□ -1.77
VPS54-202ENST00000354504 SAMD9Q5K651 1589 aa4□□□□□ -1.77
VPS54-202ENST00000354504 PTCD2Q8WV60 388 aaKnown RBP4□□□□□ -1.77
VPS54-202ENST00000354504 KRTAP3-3Q9BYR6 98 aa4□□□□□ -1.77
VPS54-202ENST00000354504 KRTAP3-2Q9BYR7 98 aa4□□□□□ -1.77
VPS54-202ENST00000354504 EFCAB3Q8N7B9 438 aa3.99□□□□□ -1.77
VPS54-202ENST00000354504 PHF8Q9UPP1 1060 aa3.99□□□□□ -1.77
VPS54-202ENST00000354504 NCKAP5LQ9HCH0 1330 aa3.99□□□□□ -1.77
VPS54-202ENST00000354504 CUL7Q14999 1698 aa3.98□□□□□ -1.77
VPS54-202ENST00000354504 HS3ST6Q96QI5 342 aa3.98□□□□□ -1.77
VPS54-202ENST00000354504 WDR62O43379 1518 aa3.98□□□□□ -1.77
VPS54-202ENST00000354504 ABCA10Q8WWZ4 1543 aa3.98□□□□□ -1.77
VPS54-202ENST00000354504 ARAP1Q96P48 1450 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms