RNA–Protein interactions for RNA: ENST00000340480.8

HIPK1-201, Transcript of homeodomain interacting protein kinase 1, humanhuman

TSL 1 (best) BASIC

Gene HIPK1, Length 6,997 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK1-201ENST00000340480 ROCK1Q13464 1354 aa10.28□□□□□ -0.76
HIPK1-201ENST00000340480 HNRNPUQ00839 825 aaKnown RBP eCLIP10.28□□□□□ -0.76
HIPK1-201ENST00000340480 MRS2Q9HD23 443 aa10.27□□□□□ -0.76
HIPK1-201ENST00000340480 KDM2AQ9Y2K7 1162 aa10.27□□□□□ -0.76
HIPK1-201ENST00000340480 AKNAQ7Z591 1439 aa10.27□□□□□ -0.76
HIPK1-201ENST00000340480 CTTNBP2Q8WZ74 1663 aa10.26□□□□□ -0.77
HIPK1-201ENST00000340480 ADAMTS12P58397 1594 aa10.26□□□□□ -0.77
HIPK1-201ENST00000340480 WDR62O43379 1518 aa10.26□□□□□ -0.77
HIPK1-201ENST00000340480 TMC1Q8TDI8 760 aa10.26□□□□□ -0.77
HIPK1-201ENST00000340480 ABCA5Q8WWZ7 1642 aa10.26□□□□□ -0.77
HIPK1-201ENST00000340480 UGGT2Q9NYU1 1516 aa10.25□□□□□ -0.77
HIPK1-201ENST00000340480 ROCK2O75116 1388 aaKnown RBP10.25□□□□□ -0.77
HIPK1-201ENST00000340480 CHGAP10645 457 aaKnown RBP10.25□□□□□ -0.77
HIPK1-201ENST00000340480 SPAG9O60271 1321 aaKnown RBP10.24□□□□□ -0.77
HIPK1-201ENST00000340480 STAC3Q96MF2 364 aa10.24□□□□□ -0.77
HIPK1-201ENST00000340480 DNAJC5BQ9UF47 199 aa10.24□□□□□ -0.77
HIPK1-201ENST00000340480 STAG3Q9UJ98 1225 aa10.23□□□□□ -0.77
HIPK1-201ENST00000340480 ZNF608Q9ULD9 1512 aaPredicted RBP10.23□□□□□ -0.77
HIPK1-201ENST00000340480 ANKRD50Q9ULJ7 1429 aa10.23□□□□□ -0.77
HIPK1-201ENST00000340480 HSPA5P11021 654 aaKnown RBP10.23□□□□□ -0.77
HIPK1-201ENST00000340480 L3MBTL2Q969R5 705 aa10.23□□□□□ -0.77
HIPK1-201ENST00000340480 KIF21AQ7Z4S6 1674 aa10.22□□□□□ -0.77
HIPK1-201ENST00000340480 CFAP43Q8NDM7 1665 aa10.22□□□□□ -0.77
HIPK1-201ENST00000340480 OSCARQ8IYS5 282 aa10.21□□□□□ -0.77
HIPK1-201ENST00000340480 HNRNPMP52272 730 aaKnown RBP eCLIP10.21□□□□□ -0.782e-6■■□□□ 12.5
HIPK1-201ENST00000340480 KIF15Q9NS87 1388 aa10.21□□□□□ -0.78
HIPK1-201ENST00000340480 NAIPQ13075 1403 aa10.2□□□□□ -0.78
HIPK1-201ENST00000340480 DCAF11Q8TEB1 546 aa10.2□□□□□ -0.78
HIPK1-201ENST00000340480 HIRIP3Q9BW71 556 aaPredicted RBP10.2□□□□□ -0.78
HIPK1-201ENST00000340480 DAPK1P53355 1430 aa10.2□□□□□ -0.78
HIPK1-201ENST00000340480 RGL3Q3MIN7 710 aa10.2□□□□□ -0.78
HIPK1-201ENST00000340480 CCDC144AA2RUR9 1427 aa10.2□□□□□ -0.78
HIPK1-201ENST00000340480 FAM9BQ8IZU0 186 aa10.2□□□□□ -0.78
HIPK1-201ENST00000340480 ARID4BQ4LE39 1312 aaPredicted RBP10.19□□□□□ -0.78
HIPK1-201ENST00000340480 TMF1P82094 1093 aa10.19□□□□□ -0.78
HIPK1-201ENST00000340480 PTPN23Q9H3S7 1636 aa10.18□□□□□ -0.78
HIPK1-201ENST00000340480 CDK13Q14004 1512 aaKnown RBP10.18□□□□□ -0.78
HIPK1-201ENST00000340480 SCAF1Q9H7N4 1312 aaKnown RBP10.18□□□□□ -0.78
HIPK1-201ENST00000340480 RTL5Q5HYW3 569 aaPredicted RBP10.17□□□□□ -0.78
HIPK1-201ENST00000340480 SAMD9Q5K651 1589 aa10.17□□□□□ -0.78
HIPK1-201ENST00000340480 EIF3AQ14152 1382 aaKnown RBP10.17□□□□□ -0.78
HIPK1-201ENST00000340480 C9orf84Q5VXU9 1444 aa10.16□□□□□ -0.78
HIPK1-201ENST00000340480 WDR43Q15061 677 aaKnown RBP eCLIP10.16□□□□□ -0.78
HIPK1-201ENST00000340480 KNSTRNQ9Y448 316 aa10.16□□□□□ -0.78
HIPK1-201ENST00000340480 FKBP8Q14318 412 aa10.15□□□□□ -0.78
HIPK1-201ENST00000340480 KIAA0556O60303 1618 aa10.15□□□□□ -0.78
HIPK1-201ENST00000340480 KIF14Q15058 1648 aa10.15□□□□□ -0.78
HIPK1-201ENST00000340480 CANXP27824 592 aaKnown RBP10.15□□□□□ -0.78
HIPK1-201ENST00000340480 NUP160Q12769 1436 aa10.15□□□□□ -0.78
HIPK1-201ENST00000340480 TARBP1Q13395 1621 aaKnown RBP10.15□□□□□ -0.78
HIPK1-201ENST00000340480 TCOF1Q13428 1488 aaKnown RBP10.15□□□□□ -0.79
HIPK1-201ENST00000340480 ARHGAP5Q13017 1502 aa10.15□□□□□ -0.79
HIPK1-201ENST00000340480 RAPGEF6Q8TEU7 1601 aa10.15□□□□□ -0.79
HIPK1-201ENST00000340480 ZNF644Q9H582 1327 aaPredicted RBP10.15□□□□□ -0.79
HIPK1-201ENST00000340480 KIAA1107Q9UPP5 1409 aa10.14□□□□□ -0.79
HIPK1-201ENST00000340480 FOXD1Q16676 465 aa10.14□□□□□ -0.79
HIPK1-201ENST00000340480 RALBP1Q15311 655 aa10.14□□□□□ -0.79
HIPK1-201ENST00000340480 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.14□□□□□ -0.79
HIPK1-201ENST00000340480 EIF4G3O43432 1585 aaKnown RBP10.14□□□□□ -0.79
HIPK1-201ENST00000340480 PLB1Q6P1J6 1458 aa10.13□□□□□ -0.79
HIPK1-201ENST00000340480 CCDC141Q6ZP82 1450 aa10.13□□□□□ -0.79
HIPK1-201ENST00000340480 CAMSAP2Q08AD1 1489 aa10.12□□□□□ -0.79
HIPK1-201ENST00000340480 PBRM1Q86U86 1689 aa10.12□□□□□ -0.79
HIPK1-201ENST00000340480 KIF3BO15066 747 aa10.12□□□□□ -0.79
HIPK1-201ENST00000340480 ERICH6BQ5W0A0 696 aa10.12□□□□□ -0.79
HIPK1-201ENST00000340480 NUP153P49790 1475 aaKnown RBP10.11□□□□□ -0.79
HIPK1-201ENST00000340480 ABCC5O15440 1437 aa10.11□□□□□ -0.79
HIPK1-201ENST00000340480 HDGFP51858 240 aaKnown RBP10.11□□□□□ -0.79
HIPK1-201ENST00000340480 KTN1Q86UP2 1357 aaKnown RBP10.11□□□□□ -0.79
HIPK1-201ENST00000340480 CFAP53Q96M91 514 aa10.1□□□□□ -0.79
HIPK1-201ENST00000340480 ITSN2Q9NZM3 1697 aa10.1□□□□□ -0.79
HIPK1-201ENST00000340480 USP47Q96K76 1375 aa10.09□□□□□ -0.79
HIPK1-201ENST00000340480 NCOA1Q15788 1441 aa10.08□□□□□ -0.8
HIPK1-201ENST00000340480 PLPPR3Q6T4P5 718 aa10.08□□□□□ -0.8
HIPK1-201ENST00000340480 NPM2Q86SE8 214 aaKnown RBP10.07□□□□□ -0.8
HIPK1-201ENST00000340480 GPATCH8Q9UKJ3 1502 aaKnown RBP10.07□□□□□ -0.8
HIPK1-201ENST00000340480 DISP1Q96F81 1524 aa10.07□□□□□ -0.8
HIPK1-201ENST00000340480 GGT6Q6P531 493 aa10.06□□□□□ -0.8
HIPK1-201ENST00000340480 SHANK2Q9UPX8 1470 aa10.06□□□□□ -0.8
HIPK1-201ENST00000340480 CCDC7Q96M83 1385 aa10.05□□□□□ -0.8
HIPK1-201ENST00000340480 ARHGEF11O15085 1522 aa10.05□□□□□ -0.8
HIPK1-201ENST00000340480 CNTLNQ9NXG0 1405 aa10.05□□□□□ -0.8
HIPK1-201ENST00000340480 ANKRD30BQ9BXX2 1392 aa10.05□□□□□ -0.8
HIPK1-201ENST00000340480 WASHC2CQ9Y4E1 1318 aa10.04□□□□□ -0.8
HIPK1-201ENST00000340480 NLRP13Q86W25 1043 aa10.04□□□□□ -0.8
HIPK1-201ENST00000340480 ATP10BO94823 1461 aa10.04□□□□□ -0.8
HIPK1-201ENST00000340480 CCDC136Q96JN2 1154 aa10.03□□□□□ -0.8
HIPK1-201ENST00000340480 PRKRIP1Q9H875 184 aaPredicted RBP10.03□□□□□ -0.8
HIPK1-201ENST00000340480 RPRD2Q5VT52 1461 aaKnown RBP10.02□□□□□ -0.8
HIPK1-201ENST00000340480 MAPKBP1O60336 1514 aa10.01□□□□□ -0.81
HIPK1-201ENST00000340480 POGKQ9P215 609 aa10.01□□□□□ -0.81
HIPK1-201ENST00000340480 NUDCQ9Y266 331 aa10.01□□□□□ -0.81
HIPK1-201ENST00000340480 WASHC2AQ641Q2 1341 aa10.01□□□□□ -0.81
HIPK1-201ENST00000340480 PDE3BQ13370 1112 aa10.01□□□□□ -0.81
HIPK1-201ENST00000340480 ST20-MTHFSA0A0A6YYL1 179 aa10.01□□□□□ -0.81
HIPK1-201ENST00000340480 PPP4R2Q9NY27 417 aa10□□□□□ -0.81
HIPK1-201ENST00000340480 MYBBP1AQ9BQG0 1328 aaKnown RBP10□□□□□ -0.81
HIPK1-201ENST00000340480 VGFO15240 615 aaPredicted RBP10□□□□□ -0.81
HIPK1-201ENST00000340480 BCL11AQ9H165 835 aa10□□□□□ -0.81
HIPK1-201ENST00000340480 PNNQ9H307 717 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms