RNA–Protein interactions for RNA: ENST00000340480.8

HIPK1-201, Transcript of homeodomain interacting protein kinase 1, humanhuman

TSL 1 (best) BASIC

Gene HIPK1, Length 6,997 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK1-201ENST00000340480 NISCHQ9Y2I1 1504 aa14.96□□□□□ -0.01
HIPK1-201ENST00000340480 DCAF8L2P0C7V8 631 aa13.28□□□□□ -0.28
HIPK1-201ENST00000340480 SHROOM4Q9ULL8 1493 aa12.87□□□□□ -0.35
HIPK1-201ENST00000340480 SUPT5HO00267 1087 aaKnown RBP12.81□□□□□ -0.36
HIPK1-201ENST00000340480 CCDC180Q9P1Z9 1646 aa12.76□□□□□ -0.37
HIPK1-201ENST00000340480 ZCCHC6Q5VYS8 1495 aaKnown RBP12.54□□□□□ -0.4
HIPK1-201ENST00000340480 DCAF1Q9Y4B6 1507 aa12.3□□□□□ -0.44
HIPK1-201ENST00000340480 ABCC9O60706 1549 aa12.25□□□□□ -0.45
HIPK1-201ENST00000340480 TRIM41Q8WV44 630 aa12.1□□□□□ -0.47
HIPK1-201ENST00000340480 NACADO15069 1562 aa12.08□□□□□ -0.48
HIPK1-201ENST00000340480 MYO15BQ96JP2 1530 aa12.07□□□□□ -0.48
HIPK1-201ENST00000340480 CHIC1Q5VXU3 224 aa12.04□□□□□ -0.48
HIPK1-201ENST00000340480 RB1CC1Q8TDY2 1594 aa12□□□□□ -0.49
HIPK1-201ENST00000340480 SCRIBQ14160 1630 aa11.97□□□□□ -0.49
HIPK1-201ENST00000340480 FAM9AQ8IZU1 332 aaPredicted RBP11.92□□□□□ -0.5
HIPK1-201ENST00000340480 APLP2Q06481 763 aa11.84□□□□□ -0.51
HIPK1-201ENST00000340480 RSF1Q96T23 1441 aaPredicted RBP11.77□□□□□ -0.53
HIPK1-201ENST00000340480 PABPN1Q86U42 306 aaKnown RBP eCLIP11.76□□□□□ -0.53
HIPK1-201ENST00000340480 ZEB1P37275 1124 aaPredicted RBP11.74□□□□□ -0.53
HIPK1-201ENST00000340480 EHMT2Q96KQ7 1210 aa11.73□□□□□ -0.53
HIPK1-201ENST00000340480 PCGF6Q9BYE7 350 aa11.72□□□□□ -0.53
HIPK1-201ENST00000340480 BAZ1AQ9NRL2 1556 aaPredicted RBP11.7□□□□□ -0.54
HIPK1-201ENST00000340480 UBTFP17480 764 aaKnown RBP11.7□□□□□ -0.54
HIPK1-201ENST00000340480 TRIM26Q12899 539 aaPredicted RBP11.65□□□□□ -0.54
HIPK1-201ENST00000340480 PELP1Q8IZL8 1130 aaKnown RBP11.6□□□□□ -0.55
HIPK1-201ENST00000340480 LOC105371045A0A1W2PR82 267 aa11.59□□□□□ -0.55
HIPK1-201ENST00000340480 CECR2Q9BXF3 1484 aa11.53□□□□□ -0.56
HIPK1-201ENST00000340480 EEA1Q15075 1411 aa11.52□□□□□ -0.57
HIPK1-201ENST00000340480 CSRNP3Q8WYN3 585 aa11.48□□□□□ -0.57
HIPK1-201ENST00000340480 MROH2BQ7Z745 1585 aa11.48□□□□□ -0.57
HIPK1-201ENST00000340480 HRCP23327 699 aa11.47□□□□□ -0.57
HIPK1-201ENST00000340480 BAZ1BQ9UIG0 1483 aaKnown RBP11.46□□□□□ -0.57
HIPK1-201ENST00000340480 CCER1Q8TC90 406 aaPredicted RBP11.43□□□□□ -0.58
HIPK1-201ENST00000340480 SMARCA2P51531 1590 aa11.42□□□□□ -0.58
HIPK1-201ENST00000340480 TOP2AP11388 1531 aaKnown RBP11.41□□□□□ -0.58
HIPK1-201ENST00000340480 RANGAP1P46060 587 aaPredicted RBP11.38□□□□□ -0.59
HIPK1-201ENST00000340480 WRNQ14191 1432 aaPredicted RBP eCLIP11.36□□□□□ -0.59
HIPK1-201ENST00000340480 SMARCA4P51532 1647 aa11.36□□□□□ -0.59
HIPK1-201ENST00000340480 TTBK1Q5TCY1 1321 aaPredicted RBP11.35□□□□□ -0.59
HIPK1-201ENST00000340480 CCDC88BA6NC98 1476 aa11.31□□□□□ -0.6
HIPK1-201ENST00000340480 WIZO95785 1651 aa11.28□□□□□ -0.6
HIPK1-201ENST00000340480 GOLGA3Q08378 1498 aa11.28□□□□□ -0.6
HIPK1-201ENST00000340480 ATP1B4Q9UN42 357 aaPredicted RBP11.28□□□□□ -0.6
HIPK1-201ENST00000340480 ATAD2BQ9ULI0 1458 aa11.26□□□□□ -0.61
HIPK1-201ENST00000340480 TNIKQ9UKE5 1360 aa11.24□□□□□ -0.61
HIPK1-201ENST00000340480 CEP164Q9UPV0 1460 aa11.24□□□□□ -0.61
HIPK1-201ENST00000340480 PPARGC1BQ86YN6 1023 aaKnown RBP11.22□□□□□ -0.61
HIPK1-201ENST00000340480 KIF27Q86VH2 1401 aa11.2□□□□□ -0.62
HIPK1-201ENST00000340480 CLIP1P30622 1438 aa11.17□□□□□ -0.62
HIPK1-201ENST00000340480 CEP162Q5TB80 1403 aa11.17□□□□□ -0.62
HIPK1-201ENST00000340480 CENPBP07199 599 aaPredicted RBP11.16□□□□□ -0.62
HIPK1-201ENST00000340480 NCAPD3P42695 1498 aa11.14□□□□□ -0.63
HIPK1-201ENST00000340480 HNRNPUL2Q1KMD3 747 aaKnown RBP11.12□□□□□ -0.63
HIPK1-201ENST00000340480 ABCC8Q09428 1581 aa11.08□□□□□ -0.64
HIPK1-201ENST00000340480 CADPSQ9ULU8 1353 aa11.08□□□□□ -0.64
HIPK1-201ENST00000340480 HMGXB3Q12766 1538 aa11.07□□□□□ -0.64
HIPK1-201ENST00000340480 SOGA1O94964 1423 aa11.06□□□□□ -0.64
HIPK1-201ENST00000340480 BICRAQ9NZM4 1560 aa11.05□□□□□ -0.64
HIPK1-201ENST00000340480 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.05□□□□□ -0.64
HIPK1-201ENST00000340480 PEG3Q9GZU2 1588 aa11.05□□□□□ -0.64
HIPK1-201ENST00000340480 EIF4G1Q04637 1599 aaKnown RBP11.04□□□□□ -0.64
HIPK1-201ENST00000340480 PDS5BQ9NTI5 1447 aa11.03□□□□□ -0.64
HIPK1-201ENST00000340480 MYT1LQ9UL68 1186 aa11.02□□□□□ -0.65
HIPK1-201ENST00000340480 ITGAEP38570 1179 aa11.01□□□□□ -0.65
HIPK1-201ENST00000340480 ERICH6Q7L0X2 663 aa11□□□□□ -0.65
HIPK1-201ENST00000340480 CDK11AQ9UQ88 783 aaPredicted RBP11□□□□□ -0.65
HIPK1-201ENST00000340480 CUX2O14529 1486 aa10.99□□□□□ -0.65
HIPK1-201ENST00000340480 FAM50AQ14320 339 aaKnown RBP10.99□□□□□ -0.65
HIPK1-201ENST00000340480 VPS8Q8N3P4 1428 aa10.98□□□□□ -0.65
HIPK1-201ENST00000340480 FHAD1B1AJZ9 1412 aa10.97□□□□□ -0.65
HIPK1-201ENST00000340480 CARMIL1Q5VZK9 1371 aa10.96□□□□□ -0.65
HIPK1-201ENST00000340480 ACIN1Q9UKV3 1341 aaKnown RBP10.96□□□□□ -0.66
HIPK1-201ENST00000340480 CFTRP13569 1480 aa10.93□□□□□ -0.66
HIPK1-201ENST00000340480 P3H3Q8IVL6 736 aa10.9□□□□□ -0.66
HIPK1-201ENST00000340480 UNC13AQ9UPW8 1703 aa10.89□□□□□ -0.67
HIPK1-201ENST00000340480 FANCD2Q9BXW9 1451 aa10.89□□□□□ -0.67
HIPK1-201ENST00000340480 DIEXFQ68CQ4 756 aaKnown RBP10.89□□□□□ -0.67
HIPK1-201ENST00000340480 MTUS2Q5JR59 1369 aa10.89□□□□□ -0.67
HIPK1-201ENST00000340480 CLSPNQ9HAW4 1339 aa10.88□□□□□ -0.67
HIPK1-201ENST00000340480 RAPGEF2Q9Y4G8 1499 aa10.88□□□□□ -0.67
HIPK1-201ENST00000340480 ZNF316A6NFI3 1004 aaPredicted RBP10.87□□□□□ -0.67
HIPK1-201ENST00000340480 FBLN2P98095 1184 aa10.87□□□□□ -0.67
HIPK1-201ENST00000340480 KIF21BO75037 1637 aa10.87□□□□□ -0.67
HIPK1-201ENST00000340480 ERICH3Q5RHP9 1530 aa10.85□□□□□ -0.67
HIPK1-201ENST00000340480 TOP2BQ02880 1626 aa10.84□□□□□ -0.67
HIPK1-201ENST00000340480 ERCC6Q03468 1493 aa10.83□□□□□ -0.68
HIPK1-201ENST00000340480 CHMP7Q8WUX9 453 aaPredicted RBP10.83□□□□□ -0.68
HIPK1-201ENST00000340480 FMN1Q68DA7 1419 aa10.82□□□□□ -0.68
HIPK1-201ENST00000340480 SYNJ1O43426 1573 aa10.81□□□□□ -0.68
HIPK1-201ENST00000340480 TRIM52Q96A61 297 aa10.8□□□□□ -0.68
HIPK1-201ENST00000340480 RUSC2Q8N2Y8 1516 aa10.8□□□□□ -0.68
HIPK1-201ENST00000340480 FGD5Q6ZNL6 1462 aa10.8□□□□□ -0.68
HIPK1-201ENST00000340480 NEFLP07196 543 aa10.79□□□□□ -0.68
HIPK1-201ENST00000340480 CCNB3Q8WWL7 1395 aa10.78□□□□□ -0.68
HIPK1-201ENST00000340480 CC2D2AQ9P2K1 1620 aa10.77□□□□□ -0.69
HIPK1-201ENST00000340480 IGF1RP08069 1367 aa10.76□□□□□ -0.69
HIPK1-201ENST00000340480 PRXQ9BXM0 1461 aa10.75□□□□□ -0.69
HIPK1-201ENST00000340480 TDRD9Q8NDG6 1382 aaKnown RBP10.73□□□□□ -0.69
HIPK1-201ENST00000340480 TONSLQ96HA7 1378 aa10.73□□□□□ -0.69
HIPK1-201ENST00000340480 NEUROD1Q13562 356 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms