RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TEX14Q8IWB6 1497 aa34.2■■■■□ 3.06
SDC3-202ENST00000339394 CDC42BPAQ5VT25 1732 aa34.2■■■■□ 3.06
SDC3-202ENST00000339394 PPRC1Q5VV67 1664 aaKnown RBP34.19■■■■□ 3.06
SDC3-202ENST00000339394 PREX2Q70Z35 1606 aa34.18■■■■□ 3.06
SDC3-202ENST00000339394 ZNF777Q9ULD5 760 aaPredicted RBP34.17■■■■□ 3.06
SDC3-202ENST00000339394 CDC42BPBQ9Y5S2 1711 aa34.15■■■■□ 3.06
SDC3-202ENST00000339394 NEO1Q92859 1461 aa34.13■■■■□ 3.05
SDC3-202ENST00000339394 MIA2Q96PC5 1412 aa34.12■■■■□ 3.05
SDC3-202ENST00000339394 ITSN2Q9NZM3 1697 aa34.12■■■■□ 3.05
SDC3-202ENST00000339394 AKNAQ7Z591 1439 aa34.12■■■■□ 3.05
SDC3-202ENST00000339394 ZNF644Q9H582 1327 aaPredicted RBP34.11■■■■□ 3.05
SDC3-202ENST00000339394 FGD6Q6ZV73 1430 aa34.09■■■■□ 3.05
SDC3-202ENST00000339394 CFAP74Q9C0B2 1584 aa34.04■■■■□ 3.04
SDC3-202ENST00000339394 ADGRL1O94910 1474 aa34.03■■■■□ 3.04
SDC3-202ENST00000339394 SAMD9LQ8IVG5 1584 aa34.02■■■■□ 3.04
SDC3-202ENST00000339394 SCAPERQ9BY12 1400 aa34.01■■■■□ 3.04
SDC3-202ENST00000339394 CAMSAP2Q08AD1 1489 aa33.99■■■■□ 3.03
SDC3-202ENST00000339394 HNRNPMP52272 730 aaKnown RBP eCLIP33.99■■■■□ 3.03
SDC3-202ENST00000339394 KIAA1107Q9UPP5 1409 aa33.98■■■■□ 3.03
SDC3-202ENST00000339394 COL17A1Q9UMD9 1497 aaPredicted RBP33.97■■■■□ 3.03
SDC3-202ENST00000339394 PLEKHH2Q8IVE3 1493 aa33.97■■■■□ 3.03
SDC3-202ENST00000339394 ABCC1P33527 1531 aa33.96■■■■□ 3.03
SDC3-202ENST00000339394 ARHGEF12Q9NZN5 1544 aa33.96■■■■□ 3.03
SDC3-202ENST00000339394 FAM50AQ14320 339 aaKnown RBP33.95■■■■□ 3.03
SDC3-202ENST00000339394 PTPN23Q9H3S7 1636 aa33.95■■■■□ 3.03
SDC3-202ENST00000339394 TCOF1Q13428 1488 aaKnown RBP33.95■■■■□ 3.02
SDC3-202ENST00000339394 RAPGEF3O95398 923 aa33.94■■■■□ 3.02
SDC3-202ENST00000339394 RRBP1Q9P2E9 1410 aaKnown RBP33.93■■■■□ 3.02
SDC3-202ENST00000339394 DENND4BO75064 1496 aaPredicted RBP33.92■■■■□ 3.02
SDC3-202ENST00000339394 SYCP2Q9BX26 1530 aa33.92■■■■□ 3.02
SDC3-202ENST00000339394 MBD5Q9P267 1494 aa33.91■■■■□ 3.02
SDC3-202ENST00000339394 AFAP1Q8N556 730 aa33.9■■■■□ 3.02
SDC3-202ENST00000339394 TRAPPC8Q9Y2L5 1435 aa33.89■■■■□ 3.02
SDC3-202ENST00000339394 POGZQ7Z3K3 1410 aa33.87■■■■□ 3.01
SDC3-202ENST00000339394 RSPH4AQ5TD94 716 aa33.86■■■■□ 3.01
SDC3-202ENST00000339394 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.85■■■■□ 3.013e-8■■■■□ 23
SDC3-202ENST00000339394 KDM6BO15054 1643 aa33.84■■■■□ 3.01
SDC3-202ENST00000339394 ZNF518AQ6AHZ1 1483 aa33.83■■■■□ 3.01
SDC3-202ENST00000339394 CCDC141Q6ZP82 1450 aa33.78■■■■□ 3
SDC3-202ENST00000339394 ARHGEF5Q12774 1597 aa33.78■■■■□ 3
SDC3-202ENST00000339394 FRMPD1Q5SYB0 1578 aa33.77■■■■□ 3
SDC3-202ENST00000339394 ABCC5O15440 1437 aa33.77■■■■□ 3
SDC3-202ENST00000339394 TSPY4P0CV99 314 aa33.76■■■□□ 2.99
SDC3-202ENST00000339394 TSPY10P0CW01 314 aa33.76■■■□□ 2.99
SDC3-202ENST00000339394 RICTORQ6R327 1708 aa33.75■■■□□ 2.99
SDC3-202ENST00000339394 DAPK1P53355 1430 aa33.75■■■□□ 2.99
SDC3-202ENST00000339394 SPAG9O60271 1321 aaKnown RBP33.73■■■□□ 2.99
SDC3-202ENST00000339394 ITGAEP38570 1179 aa33.72■■■□□ 2.99
SDC3-202ENST00000339394 KDM5CP41229 1560 aa33.72■■■□□ 2.99
SDC3-202ENST00000339394 DNMT1P26358 1616 aaKnown RBP33.7■■■□□ 2.98
SDC3-202ENST00000339394 MYT1LQ9UL68 1186 aa33.69■■■□□ 2.98
SDC3-202ENST00000339394 MLH3Q9UHC1 1453 aa33.67■■■□□ 2.98
SDC3-202ENST00000339394 PTPRKQ15262 1439 aa33.67■■■□□ 2.98
SDC3-202ENST00000339394 ZMYM4Q5VZL5 1548 aa33.66■■■□□ 2.98
SDC3-202ENST00000339394 CHIC2Q9UKJ5 165 aa33.66■■■□□ 2.98
SDC3-202ENST00000339394 C9orf84Q5VXU9 1444 aa33.65■■■□□ 2.98
SDC3-202ENST00000339394 MAGI2Q86UL8 1455 aa33.64■■■□□ 2.98
SDC3-202ENST00000339394 RTEL1-TNFRSF6BF6WH68 1400 aa33.64■■■□□ 2.98
SDC3-202ENST00000339394 SHANK2Q9UPX8 1470 aa33.62■■■□□ 2.97
SDC3-202ENST00000339394 HECW2Q9P2P5 1572 aa33.61■■■□□ 2.97
SDC3-202ENST00000339394 YEATS2Q9ULM3 1422 aa33.6■■■□□ 2.97
SDC3-202ENST00000339394 ZFYVE16Q7Z3T8 1539 aa33.59■■■□□ 2.97
SDC3-202ENST00000339394 ATP7AQ04656 1500 aa33.58■■■□□ 2.97
SDC3-202ENST00000339394 MAST1Q9Y2H9 1570 aa33.57■■■□□ 2.96
SDC3-202ENST00000339394 INO80Q9ULG1 1556 aaPredicted RBP33.57■■■□□ 2.96
SDC3-202ENST00000339394 CROCC2H7BZ55 1655 aa33.56■■■□□ 2.96
SDC3-202ENST00000339394 TRIM26Q12899 539 aaPredicted RBP33.55■■■□□ 2.96
SDC3-202ENST00000339394 KIDINS220Q9ULH0 1771 aa33.55■■■□□ 2.96
SDC3-202ENST00000339394 RRP7BPQ9NSQ0 103 aa33.52■■■□□ 2.96
SDC3-202ENST00000339394 NCOA1Q15788 1441 aa33.52■■■□□ 2.96
SDC3-202ENST00000339394 ANKRD30AQ9BXX3 1397 aa33.52■■■□□ 2.96
SDC3-202ENST00000339394 ADGRL2O95490 1459 aa33.5■■■□□ 2.95
SDC3-202ENST00000339394 ROCK1Q13464 1354 aa33.49■■■□□ 2.95
SDC3-202ENST00000339394 ATP10AO60312 1499 aa33.48■■■□□ 2.95
SDC3-202ENST00000339394 ARHGEF40Q8TER5 1519 aa33.48■■■□□ 2.95
SDC3-202ENST00000339394 DIP2CQ9Y2E4 1556 aa33.47■■■□□ 2.95
SDC3-202ENST00000339394 ABCA6Q8N139 1617 aa33.47■■■□□ 2.95
SDC3-202ENST00000339394 KIF15Q9NS87 1388 aa33.46■■■□□ 2.95
SDC3-202ENST00000339394 PLXNC1O60486 1568 aa33.43■■■□□ 2.94
SDC3-202ENST00000339394 DHX29Q7Z478 1369 aaKnown RBP33.41■■■□□ 2.94
SDC3-202ENST00000339394 A2MP01023 1474 aa33.41■■■□□ 2.94
SDC3-202ENST00000339394 ADGBQ8N7X0 1667 aa33.37■■■□□ 2.93
SDC3-202ENST00000339394 DUOX2Q9NRD8 1548 aa33.35■■■□□ 2.93
SDC3-202ENST00000339394 HFM1A2PYH4 1435 aa33.33■■■□□ 2.93
SDC3-202ENST00000339394 NAIPQ13075 1403 aa33.33■■■□□ 2.93
SDC3-202ENST00000339394 REREQ9P2R6 1566 aa33.32■■■□□ 2.93
SDC3-202ENST00000339394 ANKRD50Q9ULJ7 1429 aa33.31■■■□□ 2.92
SDC3-202ENST00000339394 ARID4BQ4LE39 1312 aaPredicted RBP33.3■■■□□ 2.92
SDC3-202ENST00000339394 ERBINQ96RT1 1412 aa33.28■■■□□ 2.92
SDC3-202ENST00000339394 KIF3BO15066 747 aa33.27■■■□□ 2.92
SDC3-202ENST00000339394 AGLP35573 1532 aa33.25■■■□□ 2.91
SDC3-202ENST00000339394 SIGLEC1Q9BZZ2 1709 aa33.25■■■□□ 2.91
SDC3-202ENST00000339394 PCGF6Q9BYE7 350 aa33.24■■■□□ 2.91
SDC3-202ENST00000339394 SETD5Q9C0A6 1442 aa33.2■■■□□ 2.9
SDC3-202ENST00000339394 MLECQ14165 292 aa33.19■■■□□ 2.9
SDC3-202ENST00000339394 GGT6Q6P531 493 aa33.19■■■□□ 2.9
SDC3-202ENST00000339394 GCC2Q8IWJ2 1684 aa33.16■■■□□ 2.9
SDC3-202ENST00000339394 EIF2AK4Q9P2K8 1649 aaKnown RBP33.15■■■□□ 2.9
SDC3-202ENST00000339394 RAB3GAP2Q9H2M9 1393 aa33.11■■■□□ 2.89
SDC3-202ENST00000339394 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.1■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms