RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 ROCK2O75116 1388 aaKnown RBP13.15□□□□□ -0.3
CHD3-201ENST00000330494 NAP1L2Q9ULW6 460 aaPredicted RBP13.15□□□□□ -0.31
CHD3-201ENST00000330494 NUP155O75694 1391 aa13.14□□□□□ -0.31
CHD3-201ENST00000330494 APBB1O00213 710 aa13.14□□□□□ -0.31
CHD3-201ENST00000330494 SPRYD3Q8NCJ5 442 aa13.13□□□□□ -0.31
CHD3-201ENST00000330494 PPP4R2Q9NY27 417 aa13.13□□□□□ -0.31
CHD3-201ENST00000330494 TOP2AP11388 1531 aaKnown RBP13.13□□□□□ -0.31
CHD3-201ENST00000330494 KIF3BO15066 747 aa13.12□□□□□ -0.31
CHD3-201ENST00000330494 NUTM2FA1L443 756 aa13.12□□□□□ -0.31
CHD3-201ENST00000330494 NAP1L5Q96NT1 182 aaPredicted RBP13.11□□□□□ -0.31
CHD3-201ENST00000330494 HDGFP51858 240 aaKnown RBP13.09□□□□□ -0.31
CHD3-201ENST00000330494 ZNF330Q9Y3S2 320 aaPredicted RBP13.09□□□□□ -0.31
CHD3-201ENST00000330494 TRIM44Q96DX7 344 aaPredicted RBP13.09□□□□□ -0.31
CHD3-201ENST00000330494 RUSC2Q8N2Y8 1516 aa13.09□□□□□ -0.31
CHD3-201ENST00000330494 RAPGEF2Q9Y4G8 1499 aa13.09□□□□□ -0.31
CHD3-201ENST00000330494 GOLGA6L22H0YM25 854 aa13.09□□□□□ -0.31
CHD3-201ENST00000330494 CDK11BP21127 795 aaKnown RBP13.09□□□□□ -0.31
CHD3-201ENST00000330494 KCNJ4P48050 445 aa13.09□□□□□ -0.31
CHD3-201ENST00000330494 HSP90AB1P08238 724 aaKnown RBP13.08□□□□□ -0.32
CHD3-201ENST00000330494 AMER1Q5JTC6 1135 aaPredicted RBP13.08□□□□□ -0.32
CHD3-201ENST00000330494 RTF1Q92541 710 aaKnown RBP13.08□□□□□ -0.32
CHD3-201ENST00000330494 PNNQ9H307 717 aaKnown RBP13.08□□□□□ -0.32
CHD3-201ENST00000330494 FGD1P98174 961 aa13.07□□□□□ -0.32
CHD3-201ENST00000330494 EFCAB2Q5VUJ9 269 aa13.07□□□□□ -0.32
CHD3-201ENST00000330494 HDGFL2Q7Z4V5 671 aaPredicted RBP13.07□□□□□ -0.32
CHD3-201ENST00000330494 PLCB2Q00722 1185 aa13.07□□□□□ -0.32
CHD3-201ENST00000330494 U2AF1L5P0DN76 240 aaPredicted RBP13.07□□□□□ -0.32
CHD3-201ENST00000330494 U2AF1Q01081 240 aaKnown RBP eCLIP13.07□□□□□ -0.32
CHD3-201ENST00000330494 CCDC146Q8IYE0 955 aa13.07□□□□□ -0.32
CHD3-201ENST00000330494 GOLGA2Q08379 1002 aa13.07□□□□□ -0.32
CHD3-201ENST00000330494 FMN1Q68DA7 1419 aa13.06□□□□□ -0.32
CHD3-201ENST00000330494 KTN1Q86UP2 1357 aaKnown RBP13.06□□□□□ -0.32
CHD3-201ENST00000330494 PTMAP06454 111 aaKnown RBP13.05□□□□□ -0.32
CHD3-201ENST00000330494 CSB-PGBD3P0DP91 1061 aa13.05□□□□□ -0.32
CHD3-201ENST00000330494 ZRSR1Q15695 479 aaKnown RBP13.05□□□□□ -0.32
CHD3-201ENST00000330494 ANKRD30AQ9BXX3 1397 aa13.04□□□□□ -0.32
CHD3-201ENST00000330494 SMARCA4P51532 1647 aa13.04□□□□□ -0.32
CHD3-201ENST00000330494 JPH4Q96JJ6 628 aa13.03□□□□□ -0.32
CHD3-201ENST00000330494 L3MBTL2Q969R5 705 aa13.03□□□□□ -0.32
CHD3-201ENST00000330494 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.03□□□□□ -0.32
CHD3-201ENST00000330494 WASHC2CQ9Y4E1 1318 aa13.02□□□□□ -0.32
CHD3-201ENST00000330494 CADPSQ9ULU8 1353 aa13.02□□□□□ -0.32
CHD3-201ENST00000330494 LTV1Q96GA3 475 aaPredicted RBP13.02□□□□□ -0.33
CHD3-201ENST00000330494 SPAG9O60271 1321 aaKnown RBP13.02□□□□□ -0.33
CHD3-201ENST00000330494 TRAK1Q9UPV9 953 aa13.01□□□□□ -0.33
CHD3-201ENST00000330494 PRDM2Q13029 1718 aa13□□□□□ -0.33
CHD3-201ENST00000330494 ERICH6BQ5W0A0 696 aa13□□□□□ -0.33
CHD3-201ENST00000330494 CCDC9Q9Y3X0 531 aaKnown RBP13□□□□□ -0.33
CHD3-201ENST00000330494 DNTTIP2Q5QJE6 756 aaKnown RBP12.99□□□□□ -0.33
CHD3-201ENST00000330494 NOP58Q9Y2X3 529 aaKnown RBP12.99□□□□□ -0.33
CHD3-201ENST00000330494 ITPRIPQ8IWB1 547 aa12.99□□□□□ -0.33
CHD3-201ENST00000330494 NCBP3Q53F19 620 aaKnown RBP12.99□□□□□ -0.33
CHD3-201ENST00000330494 MS4A1P11836 297 aa12.99□□□□□ -0.33
CHD3-201ENST00000330494 ATAD2BQ9ULI0 1458 aa12.99□□□□□ -0.33
CHD3-201ENST00000330494 CYB5RLQ6IPT4 315 aa12.99□□□□□ -0.33
CHD3-201ENST00000330494 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.98□□□□□ -0.33
CHD3-201ENST00000330494 ISY1Q9ULR0 285 aaKnown RBP12.98□□□□□ -0.33
CHD3-201ENST00000330494 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
CHD3-201ENST00000330494 RCAN3Q9UKA8 241 aa12.97□□□□□ -0.33
CHD3-201ENST00000330494 CCER2I3L3R5 266 aa12.96□□□□□ -0.33
CHD3-201ENST00000330494 CCDC18Q5T9S5 1454 aa12.96□□□□□ -0.33
CHD3-201ENST00000330494 NGDNQ8NEJ9 315 aaKnown RBP12.96□□□□□ -0.33
CHD3-201ENST00000330494 DEKP35659 375 aaKnown RBP12.96□□□□□ -0.34
CHD3-201ENST00000330494 RRP7AQ9Y3A4 280 aaKnown RBP12.96□□□□□ -0.34
CHD3-201ENST00000330494 CHMP4BQ9H444 224 aaKnown RBP12.96□□□□□ -0.34
CHD3-201ENST00000330494 CLUAP1Q96AJ1 413 aa12.95□□□□□ -0.34
CHD3-201ENST00000330494 TIMELESSQ9UNS1 1208 aa12.94□□□□□ -0.34
CHD3-201ENST00000330494 CHMP3Q9Y3E7 222 aa12.94□□□□□ -0.34
CHD3-201ENST00000330494 HSCBQ8IWL3 235 aa12.94□□□□□ -0.34
CHD3-201ENST00000330494 SLC4A10Q6U841 1118 aa12.93□□□□□ -0.34
CHD3-201ENST00000330494 EID1Q9Y6B2 187 aa12.93□□□□□ -0.34
CHD3-201ENST00000330494 SMC4Q9NTJ3 1288 aa12.91□□□□□ -0.34
CHD3-201ENST00000330494 RALBP1Q15311 655 aa12.91□□□□□ -0.34
CHD3-201ENST00000330494 ST20-MTHFSA0A0A6YYL1 179 aa12.91□□□□□ -0.34
CHD3-201ENST00000330494 AMPHP49418 695 aa12.91□□□□□ -0.34
CHD3-201ENST00000330494 EIF3AQ14152 1382 aaKnown RBP12.91□□□□□ -0.34
CHD3-201ENST00000330494 RAD54L2Q9Y4B4 1467 aa12.9□□□□□ -0.34
CHD3-201ENST00000330494 IPO8O15397 1037 aaKnown RBP12.89□□□□□ -0.35
CHD3-201ENST00000330494 PANK3Q9H999 370 aa12.89□□□□□ -0.35
CHD3-201ENST00000330494 TERF2IPQ9NYB0 399 aa12.89□□□□□ -0.35
CHD3-201ENST00000330494 RBM19Q9Y4C8 960 aaKnown RBP12.88□□□□□ -0.35
CHD3-201ENST00000330494 GOLGA6L4A6NEF3 574 aa12.88□□□□□ -0.35
CHD3-201ENST00000330494 MCCP23508 829 aa12.88□□□□□ -0.35
CHD3-201ENST00000330494 ELL2O00472 640 aaPredicted RBP12.88□□□□□ -0.35
CHD3-201ENST00000330494 BCL2L13Q9BXK5 485 aa12.87□□□□□ -0.35
CHD3-201ENST00000330494 SLKQ9H2G2 1235 aaPredicted RBP12.86□□□□□ -0.35
CHD3-201ENST00000330494 MINK1Q8N4C8 1332 aaPredicted RBP12.86□□□□□ -0.35
CHD3-201ENST00000330494 TRIM6-TRIM34B2RNG4 842 aa12.86□□□□□ -0.35
CHD3-201ENST00000330494 CLSTN1O94985 981 aa12.86□□□□□ -0.35
CHD3-201ENST00000330494 MFAP1P55081 439 aaKnown RBP12.86□□□□□ -0.35
CHD3-201ENST00000330494 NOL8Q76FK4 1167 aaKnown RBP12.86□□□□□ -0.35
CHD3-201ENST00000330494 FOXD4L1Q9NU39 408 aa12.86□□□□□ -0.35
CHD3-201ENST00000330494 CCDC144AA2RUR9 1427 aa12.85□□□□□ -0.35
CHD3-201ENST00000330494 PTPRGP23470 1445 aa12.85□□□□□ -0.35
CHD3-201ENST00000330494 GZF1Q9H116 711 aaPredicted RBP12.85□□□□□ -0.35
CHD3-201ENST00000330494 FGD5Q6ZNL6 1462 aa12.85□□□□□ -0.35
CHD3-201ENST00000330494 KIAA1211Q6ZU35 1233 aa12.85□□□□□ -0.35
CHD3-201ENST00000330494 PLIN1O60240 522 aa12.85□□□□□ -0.35
CHD3-201ENST00000330494 STK31Q9BXU1 1019 aa12.85□□□□□ -0.35
CHD3-201ENST00000330494 ZNF644Q9H582 1327 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms