RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 MTUS2Q5JR59 1369 aa44.02■■■■■ 4.64
ATPAF1-201ENST00000329231 POGZQ7Z3K3 1410 aa44■■■■■ 4.63
ATPAF1-201ENST00000329231 ZMYM4Q5VZL5 1548 aa43.98■■■■■ 4.63
ATPAF1-201ENST00000329231 PREX2Q70Z35 1606 aa43.97■■■■■ 4.63
ATPAF1-201ENST00000329231 CDC42BPBQ9Y5S2 1711 aa43.96■■■■■ 4.63
ATPAF1-201ENST00000329231 VPS8Q8N3P4 1428 aa43.93■■■■■ 4.62
ATPAF1-201ENST00000329231 MAGI2Q86UL8 1455 aa43.93■■■■■ 4.62
ATPAF1-201ENST00000329231 ARHGEF40Q8TER5 1519 aa43.93■■■■■ 4.62
ATPAF1-201ENST00000329231 CDC42BPAQ5VT25 1732 aa43.87■■■■■ 4.61
ATPAF1-201ENST00000329231 ZFYVE16Q7Z3T8 1539 aa43.87■■■■■ 4.61
ATPAF1-201ENST00000329231 ZNF518AQ6AHZ1 1483 aa43.86■■■■■ 4.61
ATPAF1-201ENST00000329231 EHBP1L1Q8N3D4 1523 aa43.86■■■■■ 4.61
ATPAF1-201ENST00000329231 GPATCH8Q9UKJ3 1502 aaKnown RBP43.85■■■■■ 4.61
ATPAF1-201ENST00000329231 CCNB3Q8WWL7 1395 aa43.83■■■■■ 4.61
ATPAF1-201ENST00000329231 ARID4BQ4LE39 1312 aaPredicted RBP43.83■■■■■ 4.61
ATPAF1-201ENST00000329231 YEATS2Q9ULM3 1422 aa43.82■■■■■ 4.61
ATPAF1-201ENST00000329231 AFAP1Q8N556 730 aa43.8■■■■■ 4.6
ATPAF1-201ENST00000329231 ABCC1P33527 1531 aa43.78■■■■■ 4.6
ATPAF1-201ENST00000329231 ZNF777Q9ULD5 760 aaPredicted RBP43.77■■■■■ 4.6
ATPAF1-201ENST00000329231 CFDP1Q9UEE9 299 aaPredicted RBP43.76■■■■■ 4.6
ATPAF1-201ENST00000329231 KDM5CP41229 1560 aa43.75■■■■■ 4.59
ATPAF1-201ENST00000329231 TIAM1Q13009 1591 aa43.74■■■■■ 4.59
ATPAF1-201ENST00000329231 ARHGEF12Q9NZN5 1544 aa43.72■■■■■ 4.59
ATPAF1-201ENST00000329231 TRAPPC8Q9Y2L5 1435 aa43.69■■■■■ 4.58
ATPAF1-201ENST00000329231 MYT1LQ9UL68 1186 aa43.68■■■■■ 4.58
ATPAF1-201ENST00000329231 ATP10AO60312 1499 aa43.68■■■■■ 4.58
ATPAF1-201ENST00000329231 ITSN2Q9NZM3 1697 aa43.68■■■■■ 4.58
ATPAF1-201ENST00000329231 SAMD9LQ8IVG5 1584 aa43.67■■■■■ 4.58
ATPAF1-201ENST00000329231 ADAMTSL3P82987 1691 aa43.65■■■■■ 4.58
ATPAF1-201ENST00000329231 BCORL1Q5H9F3 1711 aa43.65■■■■■ 4.58
ATPAF1-201ENST00000329231 HECW2Q9P2P5 1572 aa43.63■■■■■ 4.58
ATPAF1-201ENST00000329231 PLEKHH2Q8IVE3 1493 aa43.63■■■■■ 4.57
ATPAF1-201ENST00000329231 MLH3Q9UHC1 1453 aa43.63■■■■■ 4.57
ATPAF1-201ENST00000329231 C9orf84Q5VXU9 1444 aa43.62■■■■■ 4.57
ATPAF1-201ENST00000329231 KIAA1107Q9UPP5 1409 aa43.61■■■■■ 4.57
ATPAF1-201ENST00000329231 MAP3K1Q13233 1512 aa43.61■■■■■ 4.57
ATPAF1-201ENST00000329231 SUPT6HQ7KZ85 1726 aaKnown RBP43.61■■■■■ 4.57
ATPAF1-201ENST00000329231 NCOA2Q15596 1464 aa43.59■■■■■ 4.57
ATPAF1-201ENST00000329231 SYCP2Q9BX26 1530 aa43.58■■■■■ 4.57
ATPAF1-201ENST00000329231 LRRC9Q6ZRR7 1453 aa43.58■■■■■ 4.57
ATPAF1-201ENST00000329231 HNRNPMP52272 730 aaKnown RBP eCLIP43.57■■■■■ 4.57
ATPAF1-201ENST00000329231 SIGLEC1Q9BZZ2 1709 aa43.53■■■■■ 4.56
ATPAF1-201ENST00000329231 PTPRMP28827 1452 aa43.5■■■■■ 4.55
ATPAF1-201ENST00000329231 DIP2CQ9Y2E4 1556 aa43.5■■■■■ 4.55
ATPAF1-201ENST00000329231 MADDQ8WXG6 1647 aa43.49■■■■■ 4.55
ATPAF1-201ENST00000329231 APLP2Q06481 763 aa43.49■■■■■ 4.55
ATPAF1-201ENST00000329231 KANK4Q5T7N3 995 aaPredicted RBP43.47■■■■■ 4.55
ATPAF1-201ENST00000329231 SPAG9O60271 1321 aaKnown RBP43.47■■■■■ 4.55
ATPAF1-201ENST00000329231 ZNF644Q9H582 1327 aaPredicted RBP43.47■■■■■ 4.55
ATPAF1-201ENST00000329231 MLECQ14165 292 aa43.46■■■■■ 4.55
ATPAF1-201ENST00000329231 ABCA6Q8N139 1617 aa43.44■■■■■ 4.55
ATPAF1-201ENST00000329231 REREQ9P2R6 1566 aa43.43■■■■■ 4.54
ATPAF1-201ENST00000329231 KIDINS220Q9ULH0 1771 aa43.42■■■■■ 4.54
ATPAF1-201ENST00000329231 MBD5Q9P267 1494 aa43.36■■■■■ 4.53
ATPAF1-201ENST00000329231 RIMS1Q86UR5 1692 aaKnown RBP43.35■■■■■ 4.53
ATPAF1-201ENST00000329231 ATP7AQ04656 1500 aa43.32■■■■■ 4.53
ATPAF1-201ENST00000329231 AGLP35573 1532 aa43.31■■■■■ 4.52
ATPAF1-201ENST00000329231 CAMSAP2Q08AD1 1489 aa43.31■■■■■ 4.52
ATPAF1-201ENST00000329231 INO80Q9ULG1 1556 aaPredicted RBP43.29■■■■■ 4.52
ATPAF1-201ENST00000329231 RSPH4AQ5TD94 716 aa43.27■■■■■ 4.52
ATPAF1-201ENST00000329231 FER1L4A9Z1Z3 1794 aa43.26■■■■■ 4.52
ATPAF1-201ENST00000329231 MYOM3Q5VTT5 1437 aa43.22■■■■■ 4.51
ATPAF1-201ENST00000329231 CCDC141Q6ZP82 1450 aa43.21■■■■■ 4.51
ATPAF1-201ENST00000329231 RTEL1-TNFRSF6BF6WH68 1400 aa43.21■■■■■ 4.51
ATPAF1-201ENST00000329231 MIA2Q96PC5 1412 aa43.19■■■■■ 4.5
ATPAF1-201ENST00000329231 PLPPR3Q6T4P5 718 aa43.17■■■■■ 4.5
ATPAF1-201ENST00000329231 A2MP01023 1474 aa43.16■■■■■ 4.5
ATPAF1-201ENST00000329231 ARHGEF5Q12774 1597 aa43.12■■■■■ 4.49
ATPAF1-201ENST00000329231 ESF1Q9H501 851 aaKnown RBP43.12■■■■■ 4.49
ATPAF1-201ENST00000329231 TSPY4P0CV99 314 aa43.1■■■■■ 4.49
ATPAF1-201ENST00000329231 TSPY10P0CW01 314 aa43.1■■■■■ 4.49
ATPAF1-201ENST00000329231 PLXNC1O60486 1568 aa43.09■■■■■ 4.49
ATPAF1-201ENST00000329231 ADGBQ8N7X0 1667 aa43.08■■■■■ 4.49
ATPAF1-201ENST00000329231 CEBPAP49715 358 aaPredicted RBP43.01■■■■■ 4.48
ATPAF1-201ENST00000329231 CNTLNQ9NXG0 1405 aa43■■■■■ 4.47
ATPAF1-201ENST00000329231 DHX29Q7Z478 1369 aaKnown RBP43■■■■■ 4.47
ATPAF1-201ENST00000329231 LMTK3Q96Q04 1460 aa42.96■■■■■ 4.47
ATPAF1-201ENST00000329231 GGT6Q6P531 493 aa42.93■■■■■ 4.46
ATPAF1-201ENST00000329231 FGD6Q6ZV73 1430 aa42.92■■■■■ 4.46
ATPAF1-201ENST00000329231 PTPN23Q9H3S7 1636 aa42.91■■■■■ 4.46
ATPAF1-201ENST00000329231 MAST1Q9Y2H9 1570 aa42.9■■■■■ 4.46
ATPAF1-201ENST00000329231 PPP6R1Q9UPN7 881 aa42.89■■■■■ 4.46
ATPAF1-201ENST00000329231 C3P01024 1663 aa42.85■■■■■ 4.45
ATPAF1-201ENST00000329231 TCOF1Q13428 1488 aaKnown RBP42.84■■■■■ 4.45
ATPAF1-201ENST00000329231 KIF3BO15066 747 aa42.83■■■■■ 4.45
ATPAF1-201ENST00000329231 ZMYM3Q14202 1370 aa42.8■■■■■ 4.44
ATPAF1-201ENST00000329231 MROH2AA6NES4 1674 aa42.8■■■■■ 4.44
ATPAF1-201ENST00000329231 ABCC5O15440 1437 aa42.78■■■■■ 4.44
ATPAF1-201ENST00000329231 PREX1Q8TCU6 1659 aa42.77■■■■■ 4.44
ATPAF1-201ENST00000329231 SETD1BQ9UPS6 1966 aaKnown RBP42.76■■■■■ 4.44
ATPAF1-201ENST00000329231 HSPA2P54652 639 aa42.76■■■■■ 4.44
ATPAF1-201ENST00000329231 SHANK2Q9UPX8 1470 aa42.75■■■■■ 4.43
ATPAF1-201ENST00000329231 CLTCQ00610 1675 aaKnown RBP42.74■■■■■ 4.43
ATPAF1-201ENST00000329231 DAPK1P53355 1430 aa42.73■■■■■ 4.43
ATPAF1-201ENST00000329231 UHRF1BP1Q6BDS2 1440 aa42.73■■■■■ 4.43
ATPAF1-201ENST00000329231 DNMT1P26358 1616 aaKnown RBP42.7■■■■■ 4.43
ATPAF1-201ENST00000329231 NPATQ14207 1427 aa42.69■■■■■ 4.42
ATPAF1-201ENST00000329231 CROCC2H7BZ55 1655 aa42.69■■■■■ 4.42
ATPAF1-201ENST00000329231 FAM50AQ14320 339 aaKnown RBP42.65■■■■■ 4.42
ATPAF1-201ENST00000329231 FAM135AQ9P2D6 1515 aa42.65■■■■■ 4.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms