RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 PPARGC1BQ86YN6 1023 aaKnown RBP37.99■■■■□ 3.67
HOXC9-201ENST00000303450 CDC42BPBQ9Y5S2 1711 aa37.99■■■■□ 3.67
HOXC9-201ENST00000303450 NEO1Q92859 1461 aa37.98■■■■□ 3.67
HOXC9-201ENST00000303450 CFAP74Q9C0B2 1584 aa37.96■■■■□ 3.67
HOXC9-201ENST00000303450 ITSN2Q9NZM3 1697 aa37.95■■■■□ 3.67
HOXC9-201ENST00000303450 CFDP1Q9UEE9 299 aaPredicted RBP37.95■■■■□ 3.67
HOXC9-201ENST00000303450 PHLDB1Q86UU1 1377 aa37.93■■■■□ 3.66
HOXC9-201ENST00000303450 AKNAQ7Z591 1439 aa37.91■■■■□ 3.66
HOXC9-201ENST00000303450 ZNF777Q9ULD5 760 aaPredicted RBP37.88■■■■□ 3.65
HOXC9-201ENST00000303450 MYOM3Q5VTT5 1437 aa37.86■■■■□ 3.65
HOXC9-201ENST00000303450 KDM6BO15054 1643 aa37.84■■■■□ 3.65
HOXC9-201ENST00000303450 ADGRL1O94910 1474 aa37.83■■■■□ 3.65
HOXC9-201ENST00000303450 COL17A1Q9UMD9 1497 aaPredicted RBP37.78■■■■□ 3.64
HOXC9-201ENST00000303450 SAMD9LQ8IVG5 1584 aa37.77■■■■□ 3.64
HOXC9-201ENST00000303450 SCAPERQ9BY12 1400 aa37.77■■■■□ 3.64
HOXC9-201ENST00000303450 MIA2Q96PC5 1412 aa37.76■■■■□ 3.64
HOXC9-201ENST00000303450 ZNF644Q9H582 1327 aaPredicted RBP37.74■■■■□ 3.63
HOXC9-201ENST00000303450 DENND4BO75064 1496 aaPredicted RBP37.73■■■■□ 3.63
HOXC9-201ENST00000303450 ABCC1P33527 1531 aa37.73■■■■□ 3.63
HOXC9-201ENST00000303450 PLEKHH2Q8IVE3 1493 aa37.72■■■■□ 3.63
HOXC9-201ENST00000303450 RAPGEF3O95398 923 aa37.71■■■■□ 3.63
HOXC9-201ENST00000303450 FGD6Q6ZV73 1430 aa37.69■■■■□ 3.62
HOXC9-201ENST00000303450 CAMSAP2Q08AD1 1489 aa37.69■■■■□ 3.62
HOXC9-201ENST00000303450 KIAA1107Q9UPP5 1409 aa37.67■■■■□ 3.62
HOXC9-201ENST00000303450 SYCP2Q9BX26 1530 aa37.66■■■■□ 3.62
HOXC9-201ENST00000303450 HNRNPMP52272 730 aaKnown RBP eCLIP37.66■■■■□ 3.62
HOXC9-201ENST00000303450 ARHGEF12Q9NZN5 1544 aa37.66■■■■□ 3.62
HOXC9-201ENST00000303450 POGZQ7Z3K3 1410 aa37.64■■■■□ 3.62
HOXC9-201ENST00000303450 PTPN23Q9H3S7 1636 aa37.63■■■■□ 3.61
HOXC9-201ENST00000303450 RICTORQ6R327 1708 aa37.62■■■■□ 3.61
HOXC9-201ENST00000303450 ZNF518AQ6AHZ1 1483 aa37.6■■■■□ 3.61
HOXC9-201ENST00000303450 FRMPD1Q5SYB0 1578 aa37.6■■■■□ 3.61
HOXC9-201ENST00000303450 TRAPPC8Q9Y2L5 1435 aa37.59■■■■□ 3.61
HOXC9-201ENST00000303450 AFAP1Q8N556 730 aa37.59■■■■□ 3.61
HOXC9-201ENST00000303450 TCOF1Q13428 1488 aaKnown RBP37.55■■■■□ 3.6
HOXC9-201ENST00000303450 MBD5Q9P267 1494 aa37.55■■■■□ 3.6
HOXC9-201ENST00000303450 FAM50AQ14320 339 aaKnown RBP37.53■■■■□ 3.6
HOXC9-201ENST00000303450 RSPH4AQ5TD94 716 aa37.52■■■■□ 3.6
HOXC9-201ENST00000303450 KDM5CP41229 1560 aa37.5■■■■□ 3.59
HOXC9-201ENST00000303450 ZMYM4Q5VZL5 1548 aa37.49■■■■□ 3.59
HOXC9-201ENST00000303450 ARHGEF5Q12774 1597 aa37.48■■■■□ 3.59
HOXC9-201ENST00000303450 MYT1LQ9UL68 1186 aa37.47■■■■□ 3.59
HOXC9-201ENST00000303450 CCDC141Q6ZP82 1450 aa37.47■■■■□ 3.59
HOXC9-201ENST00000303450 SPAG9O60271 1321 aaKnown RBP37.43■■■■□ 3.58
HOXC9-201ENST00000303450 MAGI2Q86UL8 1455 aa37.43■■■■□ 3.58
HOXC9-201ENST00000303450 RRBP1Q9P2E9 1410 aaKnown RBP37.43■■■■□ 3.58
HOXC9-201ENST00000303450 HECW2Q9P2P5 1572 aa37.41■■■■□ 3.58
HOXC9-201ENST00000303450 TSPY4P0CV99 314 aa37.41■■■■□ 3.58
HOXC9-201ENST00000303450 TSPY10P0CW01 314 aa37.41■■■■□ 3.58
HOXC9-201ENST00000303450 MLH3Q9UHC1 1453 aa37.4■■■■□ 3.58
HOXC9-201ENST00000303450 ZFYVE16Q7Z3T8 1539 aa37.37■■■■□ 3.57
HOXC9-201ENST00000303450 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.37■■■■□ 3.57
HOXC9-201ENST00000303450 DNMT1P26358 1616 aaKnown RBP37.37■■■■□ 3.57
HOXC9-201ENST00000303450 ABCC5O15440 1437 aa37.35■■■■□ 3.57
HOXC9-201ENST00000303450 DAPK1P53355 1430 aa37.35■■■■□ 3.57
HOXC9-201ENST00000303450 YEATS2Q9ULM3 1422 aa37.34■■■■□ 3.57
HOXC9-201ENST00000303450 ATP7AQ04656 1500 aa37.33■■■■□ 3.57
HOXC9-201ENST00000303450 KIDINS220Q9ULH0 1771 aa37.32■■■■□ 3.57
HOXC9-201ENST00000303450 ARHGEF40Q8TER5 1519 aa37.32■■■■□ 3.56
HOXC9-201ENST00000303450 INO80Q9ULG1 1556 aaPredicted RBP37.31■■■■□ 3.56
HOXC9-201ENST00000303450 RTEL1-TNFRSF6BF6WH68 1400 aa37.31■■■■□ 3.56
HOXC9-201ENST00000303450 C9orf84Q5VXU9 1444 aa37.29■■■■□ 3.56
HOXC9-201ENST00000303450 CROCC2H7BZ55 1655 aa37.29■■■■□ 3.56
HOXC9-201ENST00000303450 SHANK2Q9UPX8 1470 aa37.26■■■■□ 3.56
HOXC9-201ENST00000303450 MAST1Q9Y2H9 1570 aa37.26■■■■□ 3.56
HOXC9-201ENST00000303450 ITGAEP38570 1179 aa37.26■■■■□ 3.55
HOXC9-201ENST00000303450 ABCA6Q8N139 1617 aa37.24■■■■□ 3.55
HOXC9-201ENST00000303450 ATP10AO60312 1499 aa37.23■■■■□ 3.55
HOXC9-201ENST00000303450 DIP2CQ9Y2E4 1556 aa37.23■■■■□ 3.55
HOXC9-201ENST00000303450 CHIC2Q9UKJ5 165 aa37.22■■■■□ 3.55
HOXC9-201ENST00000303450 PTPRKQ15262 1439 aa37.16■■■■□ 3.54
HOXC9-201ENST00000303450 ADGBQ8N7X0 1667 aa37.13■■■■□ 3.54
HOXC9-201ENST00000303450 ANKRD30AQ9BXX3 1397 aa37.13■■■■□ 3.53
HOXC9-201ENST00000303450 PLXNC1O60486 1568 aa37.12■■■■□ 3.53
HOXC9-201ENST00000303450 ARID4BQ4LE39 1312 aaPredicted RBP37.1■■■■□ 3.53
HOXC9-201ENST00000303450 A2MP01023 1474 aa37.1■■■■□ 3.53
HOXC9-201ENST00000303450 RRP7BPQ9NSQ0 103 aa37.1■■■■□ 3.53
HOXC9-201ENST00000303450 REREQ9P2R6 1566 aa37.09■■■■□ 3.53
HOXC9-201ENST00000303450 ADGRL2O95490 1459 aa37.08■■■■□ 3.53
HOXC9-201ENST00000303450 NCOA1Q15788 1441 aa37.07■■■■□ 3.53
HOXC9-201ENST00000303450 KIF15Q9NS87 1388 aa37.07■■■■□ 3.52
HOXC9-201ENST00000303450 DHX29Q7Z478 1369 aaKnown RBP37.05■■■■□ 3.52
HOXC9-201ENST00000303450 SIGLEC1Q9BZZ2 1709 aa37.03■■■■□ 3.52
HOXC9-201ENST00000303450 ROCK1Q13464 1354 aa37.03■■■■□ 3.52
HOXC9-201ENST00000303450 DUOX2Q9NRD8 1548 aa37.01■■■■□ 3.51
HOXC9-201ENST00000303450 AGLP35573 1532 aa36.98■■■■□ 3.51
HOXC9-201ENST00000303450 MLECQ14165 292 aa36.93■■■■□ 3.5
HOXC9-201ENST00000303450 KIF3BO15066 747 aa36.9■■■■□ 3.5
HOXC9-201ENST00000303450 ERBINQ96RT1 1412 aa36.9■■■■□ 3.5
HOXC9-201ENST00000303450 BCORL1Q5H9F3 1711 aa36.87■■■■□ 3.49
HOXC9-201ENST00000303450 ANKRD50Q9ULJ7 1429 aa36.86■■■■□ 3.49
HOXC9-201ENST00000303450 EIF2AK4Q9P2K8 1649 aaKnown RBP36.85■■■■□ 3.49
HOXC9-201ENST00000303450 GGT6Q6P531 493 aa36.84■■■■□ 3.49
HOXC9-201ENST00000303450 TRIM26Q12899 539 aaPredicted RBP36.8■■■■□ 3.48
HOXC9-201ENST00000303450 HFM1A2PYH4 1435 aa36.8■■■■□ 3.48
HOXC9-201ENST00000303450 NAIPQ13075 1403 aa36.8■■■■□ 3.48
HOXC9-201ENST00000303450 GCC2Q8IWJ2 1684 aa36.77■■■■□ 3.48
HOXC9-201ENST00000303450 ADAMTSL3P82987 1691 aa36.75■■■■□ 3.47
HOXC9-201ENST00000303450 RNF17Q9BXT8 1623 aaKnown RBP36.74■■■■□ 3.47
HOXC9-201ENST00000303450 KDM4FA0A1W2PPD8 638 aa36.73■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms